BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00009378
         (1813 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002519957.1| ATP synthase CF1 alpha chain (chloroplast) [...   611   e-172
ref|YP_001876579.1| ATP synthase CF1 alpha subunit [Welwitschia ...   577   e-162
dbj|BAN16882.1| ATP synthase subunit alpha (chloroplast) [Gnetum...   575   e-161
ref|YP_002519780.1| ATP synthase CF1 alpha chain [Gnetum parvifo...   573   e-160
ref|XP_003605608.1| DNA-directed RNA polymerase subunit beta, pa...   530   e-160
dbj|BAL03668.1| ATP synthase CF1 alpha chain (chloroplast) [Bowe...   554   e-155
gb|AFM54193.1| AtpA (chloroplast) [Zamia furfuracea]                  553   e-155
gb|AFM54192.1| AtpA (chloroplast) [Ceratozamia hildae]                550   e-154
ref|YP_008965193.1| ATP synthase CF1 alpha chain (chloroplast) [...   548   e-153
gb|AFU94530.1| AtpA, partial (chloroplast) [Irvingia malayana]        548   e-153
ref|YP_001806693.1| ATP synthase CF1 alpha subunit [Cryptomeria ...   548   e-153
gb|ABU85310.1| ATP synthase CF1 alpha subunit [Cycas micronesica]     548   e-153
ref|YP_007507096.1| ATP synthase CF1 alpha subunit (chloroplast)...   547   e-153
ref|YP_001312176.1| ATP synthase CF1 alpha chain [Cycas taitunge...   547   e-153
ref|NP_777397.1| ATP synthase CF1 alpha subunit [Anthoceros form...   547   e-153
ref|YP_007353900.1| ATP synthase CF1 alpha subunit (chloroplast)...   547   e-153
ref|YP_008965096.1| ATP synthase CF1 alpha chain (chloroplast) [...   547   e-153
gb|AER45654.1| atpA (chloroplast) [Agathis australis]                 546   e-152
ref|YP_004891344.1| ATP synthase CF1 alpha chain (chloroplast) [...   546   e-152
ref|YP_008965015.1| ATP synthase CF1 alpha chain (chloroplast) [...   546   e-152

>ref|YP_002519957.1| ATP synthase CF1 alpha chain (chloroplast) [Ephedra equisetina]
            gi|220983558|dbj|BAH11325.1| ATP synthase CF1 alpha chain
            (chloroplast) [Ephedra equisetina]
          Length = 507

 Score =  611 bits (1576), Expect = e-172
 Identities = 317/318 (99%), Positives = 317/318 (99%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT
Sbjct: 1    MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            IGIALNLETNNVGVVLMGDGLTIKEG SVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG
Sbjct: 61   IGIALNLETNNVGVVLMGDGLTIKEGGSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
            PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP
Sbjct: 181  TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE
Sbjct: 241  YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLNNQLGEGSLTALP
Sbjct: 301  RAAKLNNQLGEGSLTALP 318


>ref|YP_001876579.1| ATP synthase CF1 alpha subunit [Welwitschia mirabilis]
            gi|254808123|sp|B2Y1W2.1|ATPA_WELMI RecName: Full=ATP
            synthase subunit alpha, chloroplastic; AltName: Full=ATP
            synthase F1 sector subunit alpha; AltName: Full=F-ATPase
            subunit alpha gi|163311634|gb|ABY26792.1| ATP synthase
            CF1 alpha subunit [Welwitschia mirabilis]
            gi|220983457|dbj|BAH11226.1| ATP synthase CF1 alpha chain
            (chloroplast) [Welwitschia mirabilis]
          Length = 507

 Score =  577 bits (1487), Expect = e-162
 Identities = 294/318 (92%), Positives = 309/318 (97%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            MITIRPDEISS+IR+QIEQYN+EVQV+NMG VLQVGDGIARIHGL EVMAGELVEFEDGT
Sbjct: 1    MITIRPDEISSIIREQIEQYNSEVQVVNMGTVLQVGDGIARIHGLREVMAGELVEFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE  NVGVVLMGDGLTIKEGSSVK TGKIAQIPVSDAFLGRIV+ALAQP+DGRG
Sbjct: 61   VGIALNLEAQNVGVVLMGDGLTIKEGSSVKTTGKIAQIPVSDAFLGRIVNALAQPVDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
            PISASE RLIESPAPGI+SRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  PISASEFRLIESPAPGIVSRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQNVICVYVAIGQKASS+AQ+VKTLRE  ++EYTIVV EPADSPATLQYLAP
Sbjct: 181  TDTIINQKGQNVICVYVAIGQKASSIAQIVKTLRECGAMEYTIVVVEPADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+QLGEGSLTALP
Sbjct: 301  RAAKLNSQLGEGSLTALP 318


>dbj|BAN16882.1| ATP synthase subunit alpha (chloroplast) [Gnetum ula]
          Length = 508

 Score =  575 bits (1481), Expect = e-161
 Identities = 292/319 (91%), Positives = 308/319 (96%)
 Frame = +3

Query: 855  VMITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDG 1034
            +MITIRPDEISS+IR+QIEQYNNE+QV+NMG VLQVGDGIARIHGLCEVMAGELVEFED 
Sbjct: 1    MMITIRPDEISSIIREQIEQYNNEIQVVNMGTVLQVGDGIARIHGLCEVMAGELVEFEDS 60

Query: 1035 TIGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGR 1214
            T+GIALNLET NVGVVLMGDGLTIKEGS VK TGKIAQIPVSDAFLGRIV+ALAQPIDGR
Sbjct: 61   TVGIALNLETKNVGVVLMGDGLTIKEGSFVKTTGKIAQIPVSDAFLGRIVNALAQPIDGR 120

Query: 1215 GPISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV 1394
            GPI ASE RLIESPAPGI+SRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV
Sbjct: 121  GPIPASEFRLIESPAPGIVSRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV 180

Query: 1395 ATDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLA 1574
            ATDTILNQK QNV+CVYVAIGQKASSVAQVV TLR+RS++EYTIVV EPADSPATLQYLA
Sbjct: 181  ATDTILNQKDQNVVCVYVAIGQKASSVAQVVNTLRKRSAMEYTIVVVEPADSPATLQYLA 240

Query: 1575 PYTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLL 1754
            PYTG ALAEYFMYKK+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLL
Sbjct: 241  PYTGTALAEYFMYKKKHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 300

Query: 1755 ERAAKLNNQLGEGSLTALP 1811
            ERAAKLN+QLGEGS+TALP
Sbjct: 301  ERAAKLNSQLGEGSVTALP 319


>ref|YP_002519780.1| ATP synthase CF1 alpha chain [Gnetum parvifolium]
            gi|512721577|ref|YP_008082197.1| ATP synthase CF1 alpha
            chain (chloroplast) [Gnetum montanum]
            gi|190358175|sp|A6BM08.1|ATPA_GNEPA RecName: Full=ATP
            synthase subunit alpha, chloroplastic; AltName: Full=ATP
            synthase F1 sector subunit alpha; AltName: Full=F-ATPase
            subunit alpha gi|149941372|dbj|BAF64853.1| ATPase alpha
            subunit [Gnetum parvifolium] gi|220983523|dbj|BAH11291.1|
            ATP synthase CF1 alpha chain (chloroplast) [Gnetum
            parvifolium] gi|490345022|gb|AGL11042.1| ATP synthase CF1
            alpha chain (chloroplast) [Gnetum montanum]
          Length = 508

 Score =  573 bits (1476), Expect = e-160
 Identities = 292/319 (91%), Positives = 307/319 (96%)
 Frame = +3

Query: 855  VMITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDG 1034
            +MITIRPDEISS+IR+QIEQYNNE+QV+NMG VLQVGDGIARIHGL EVMAGELVEFED 
Sbjct: 1    MMITIRPDEISSIIREQIEQYNNEIQVVNMGTVLQVGDGIARIHGLYEVMAGELVEFEDS 60

Query: 1035 TIGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGR 1214
            T+GIALNLET NVGVVLMGDGLTIKEGS VK TGKIAQIPVSDAFLGRIV+ALAQPIDGR
Sbjct: 61   TVGIALNLETQNVGVVLMGDGLTIKEGSFVKTTGKIAQIPVSDAFLGRIVNALAQPIDGR 120

Query: 1215 GPISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV 1394
            GPI ASE RLIESPAPGI+SRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV
Sbjct: 121  GPIPASEFRLIESPAPGIVSRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAV 180

Query: 1395 ATDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLA 1574
            ATDTILNQKGQNV+CVYVAIGQKASSVAQVV  LRERS++EYTIVV EPADSPATLQYLA
Sbjct: 181  ATDTILNQKGQNVVCVYVAIGQKASSVAQVVNMLRERSAMEYTIVVVEPADSPATLQYLA 240

Query: 1575 PYTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLL 1754
            PYTG ALAEYFMYKK+HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLL
Sbjct: 241  PYTGTALAEYFMYKKKHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 300

Query: 1755 ERAAKLNNQLGEGSLTALP 1811
            ERAAKLN+QLGEGS+TALP
Sbjct: 301  ERAAKLNSQLGEGSITALP 319


>ref|XP_003605608.1| DNA-directed RNA polymerase subunit beta, partial [Medicago
            truncatula] gi|355506663|gb|AES87805.1| DNA-directed RNA
            polymerase subunit beta, partial [Medicago truncatula]
          Length = 561

 Score =  530 bits (1365), Expect(2) = e-160
 Identities = 269/318 (84%), Positives = 301/318 (94%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIR DEIS +IR++I+QYN EV+++N G VLQVGDGIARI+GL EVMAGELVEFE+GT
Sbjct: 76   MVTIRADEISKIIRERIQQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGT 135

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+ NVGVVLMGDGL I+EGS VKATG IAQIPVS+ +LGR+V+ALA+PIDGRG
Sbjct: 136  VGIALNLESKNVGVVLMGDGLLIQEGSLVKATGIIAQIPVSEGYLGRVVNALAKPIDGRG 195

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 196  EISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 255

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTILNQ+GQNVICVYVAIGQKASSVAQVV TL+ER ++EYTI+V+E A+SPATLQYLAP
Sbjct: 256  TDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAP 315

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY+++HTLIIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 316  YTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 375

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKL++QLGEGS+TALP
Sbjct: 376  RAAKLSSQLGEGSMTALP 393



 Score = 63.5 bits (153), Expect(2) = e-160
 Identities = 35/73 (47%), Positives = 43/73 (58%)
 Frame = +2

Query: 551 NGYLQIEEEKENLIKAASANLKQLEDSKNETVCFEXXXXXXXXXXXXSCQALRNALITLT 730
           NGY +IE EK NLI +    L+Q E+ KNET+ FE              QAL+ AL TL 
Sbjct: 1   NGYSEIEREKLNLINSIYTTLEQFENYKNETIHFEQQRAINQVQQTVLQQALQGALGTLN 60

Query: 731 NCLNNELHLYIID 769
           +CLNNELHL  I+
Sbjct: 61  SCLNNELHLRTIE 73


>dbj|BAL03668.1| ATP synthase CF1 alpha chain (chloroplast) [Bowenia serrulata]
          Length = 507

 Score =  554 bits (1427), Expect = e-155
 Identities = 281/318 (88%), Positives = 306/318 (96%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QIEQYN EV+++N+GIVLQVGDGIARIHGL EVMAGELV FEDGT
Sbjct: 1    MVTIRPDEISSIIRKQIEQYNQEVEIVNIGIVLQVGDGIARIHGLDEVMAGELVGFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVGVVLMGDGL I+EGSSVKATGKIAQIPVSDA+LGR+V+ALAQPIDGRG
Sbjct: 61   VGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             I+ASE R IESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KITASESRSIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQNVICVYVAIGQKASSVAQVV T +ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKGQNVICVYVAIGQKASSVAQVVNTFQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY++QHTLIIYDDLSKQA+AYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYREQHTLIIYDDLSKQARAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKL++QLGEGS+TALP
Sbjct: 301  RAAKLSSQLGEGSMTALP 318


>gb|AFM54193.1| AtpA (chloroplast) [Zamia furfuracea]
          Length = 507

 Score =  553 bits (1426), Expect = e-155
 Identities = 281/318 (88%), Positives = 306/318 (96%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QIEQYN EV+V+N+GIVLQVGDGIARIHGL EVMAGELVEFEDGT
Sbjct: 1    MVTIRPDEISSIIRKQIEQYNQEVEVVNIGIVLQVGDGIARIHGLDEVMAGELVEFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDGL I+EGSSVKATGKIAQIPVSDA+LGR+V+ALAQPIDGRG
Sbjct: 61   VGIALNLESNNVGAVLMGDGLMIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             I+ASE R IESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KIAASESRSIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQ+VICVYVAIGQKASSVAQVV T +ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKGQDVICVYVAIGQKASSVAQVVNTFQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY++QHTLIIYDDLSKQA+AYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYREQHTLIIYDDLSKQARAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKL++QLGEGS+TALP
Sbjct: 301  RAAKLSSQLGEGSMTALP 318


>gb|AFM54192.1| AtpA (chloroplast) [Ceratozamia hildae]
          Length = 507

 Score =  550 bits (1418), Expect = e-154
 Identities = 279/318 (87%), Positives = 304/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QIEQYN EV+V+N+GIVLQVGDGIARIHGL EVMAGELVEFEDGT
Sbjct: 1    MVTIRPDEISSIIRKQIEQYNQEVEVVNIGIVLQVGDGIARIHGLDEVMAGELVEFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDG  I+EGSSVKATGKIAQIPVSDA+LGR+V+ALAQPIDGRG
Sbjct: 61   VGIALNLESNNVGAVLMGDGFMIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             I+ASE R IESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KITASESRSIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQ+VICVYVAIGQKASSVAQVV T +ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKGQDVICVYVAIGQKASSVAQVVNTFQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGA LAEYFMY++QHTLIIYDDLSKQA+AYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGATLAEYFMYREQHTLIIYDDLSKQARAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKL++QLGEGS+TALP
Sbjct: 301  RAAKLSSQLGEGSMTALP 318


>ref|YP_008965193.1| ATP synthase CF1 alpha chain (chloroplast) [Calocedrus formosana]
            gi|482840938|dbj|BAN16935.1| ATP synthase subunit alpha
            (chloroplast) [Calocedrus formosana]
            gi|563317778|dbj|BAO19876.1| ATP synthase CF1 alpha chain
            (chloroplast) [Calocedrus formosana]
          Length = 507

 Score =  548 bits (1413), Expect = e-153
 Identities = 279/318 (87%), Positives = 304/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QIEQYNNEVQV+N+G VLQVGDGIARIHGL +VM+GELVEF DGT
Sbjct: 1    MVTIRPDEISSMIRKQIEQYNNEVQVVNIGTVLQVGDGIARIHGLDKVMSGELVEFVDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE++NVG VLMGDGL I+EGSSV+ATGKIAQIPVSDA+LGR+V+ALA+PIDG+G
Sbjct: 61   VGIALNLESDNVGAVLMGDGLMIQEGSSVRATGKIAQIPVSDAYLGRVVNALARPIDGKG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             IS+SE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQK QNVICVYVAIGQKASSVAQVV T +ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKNQNVICVYVAIGQKASSVAQVVNTFQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYK+QHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKEQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+QLG GSLTALP
Sbjct: 301  RAAKLNSQLGGGSLTALP 318


>gb|AFU94530.1| AtpA, partial (chloroplast) [Irvingia malayana]
          Length = 503

 Score =  548 bits (1413), Expect = e-153
 Identities = 279/318 (87%), Positives = 306/318 (96%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+ IR DEIS++IR++IEQYN EV+++N GIVLQVGDGIARIHGL EVMAGELVEFE+ T
Sbjct: 1    MVIIRADEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIHGLDEVMAGELVEFEEST 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            IGIALNLE+NNVGVVLMGDGL I+EGSSVKATGKIAQIPVS+A+LGR+++ALA+PIDGRG
Sbjct: 61   IGIALNLESNNVGVVLMGDGLLIQEGSSVKATGKIAQIPVSEAYLGRVINALAKPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  EISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTILNQ+GQNVICVYVAIGQKASSVAQVV TL+ER +IEYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTILNQRGQNVICVYVAIGQKASSVAQVVTTLQERGAIEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY+++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE
Sbjct: 241  YTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN++LGEGS+TALP
Sbjct: 301  RAAKLNSRLGEGSMTALP 318


>ref|YP_001806693.1| ATP synthase CF1 alpha subunit [Cryptomeria japonica]
            gi|171854951|dbj|BAG16691.1| ATP synthase CF1 alpha
            subunit [Cryptomeria japonica]
            gi|239794319|dbj|BAH73316.1| ATP synthase CF1 alpha
            subunit [Cryptomeria japonica]
            gi|239794402|dbj|BAH73398.1| ATP synthase CF1 alpha
            subunit [Cryptomeria japonica]
          Length = 507

 Score =  548 bits (1412), Expect = e-153
 Identities = 279/318 (87%), Positives = 303/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QIEQYNNEVQV+N+G VLQVGDGIARIHGL +VMAGELVEF DGT
Sbjct: 1    MVTIRPDEISSIIRKQIEQYNNEVQVVNIGTVLQVGDGIARIHGLDKVMAGELVEFVDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE++NVG VLMGDGL I+EGSSV+ATGKIAQIPVSDA+LGR+V+ALA+PIDG+G
Sbjct: 61   VGIALNLESDNVGAVLMGDGLMIQEGSSVRATGKIAQIPVSDAYLGRVVNALARPIDGKG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             IS+SE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KISSSESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQK QNVICVYVAIGQKASSVAQVV T  +R ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKNQNVICVYVAIGQKASSVAQVVNTFEDRGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYK+QHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKEQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+QLG GSLTALP
Sbjct: 301  RAAKLNSQLGGGSLTALP 318


>gb|ABU85310.1| ATP synthase CF1 alpha subunit [Cycas micronesica]
          Length = 507

 Score =  548 bits (1411), Expect = e-153
 Identities = 278/318 (87%), Positives = 304/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QI+QYN EV+V+N+GIVLQVGDGIARIHGL EVMAGELVEFEDGT
Sbjct: 1    MVTIRPDEISSIIRKQIKQYNQEVEVVNIGIVLQVGDGIARIHGLDEVMAGELVEFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDGL I+EGSSV+ATGKIAQIPVSDA+ GR+V+ALAQPIDGRG
Sbjct: 61   VGIALNLESNNVGAVLMGDGLMIQEGSSVRATGKIAQIPVSDAYSGRVVNALAQPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             I+ASE R IESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KITASESRSIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQ+VICVYVAIGQKASSVAQVV T +ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKGQDVICVYVAIGQKASSVAQVVNTFQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY +QHTLIIYDDLSKQA+AYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYNEQHTLIIYDDLSKQARAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKL++QLGEGS+TALP
Sbjct: 301  RAAKLSSQLGEGSMTALP 318


>ref|YP_007507096.1| ATP synthase CF1 alpha subunit (chloroplast) [Salvia miltiorrhiza]
            gi|401879727|gb|AFQ30914.1| ATP synthase CF1 alpha
            subunit (chloroplast) [Salvia miltiorrhiza]
            gi|573461936|emb|CCQ71605.1| ATP synthase CF1 alpha
            subunit (chloroplast) [Salvia miltiorrhiza]
          Length = 507

 Score =  547 bits (1410), Expect = e-153
 Identities = 278/318 (87%), Positives = 305/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIR DEIS++IR++IEQYN EV+++N G VLQVGDGIARIHGL EVMAGELVEFE+GT
Sbjct: 1    MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            IGIALNLE+NNVGVVLMGDGL I+EGSSVKATG+IAQIPVS A+LGR+++ALA+PIDGRG
Sbjct: 61   IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSAAYLGRVINALAKPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIESPAPGIISRRSVYEPLQTGLIAID+MIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  EISASESRLIESPAPGIISRRSVYEPLQTGLIAIDAMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTILNQ+GQNVICVYVAIGQKASSVAQVV TL+ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY+KQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+ LGEGS+TALP
Sbjct: 301  RAAKLNSSLGEGSMTALP 318


>ref|YP_001312176.1| ATP synthase CF1 alpha chain [Cycas taitungensis]
            gi|452848996|ref|YP_007474675.1| ATP synthase CF1 alpha
            subunit (chloroplast) [Cycas revoluta]
            gi|190358170|sp|A6H5F1.1|ATPA_CYCTA RecName: Full=ATP
            synthase subunit alpha, chloroplastic; AltName: Full=ATP
            synthase F1 sector subunit alpha; AltName: Full=F-ATPase
            subunit alpha gi|149941493|dbj|BAF64917.1| ATP synthase
            CF1 alpha chain (chloroplast) [Cycas taitungensis]
            gi|372863151|gb|AEX99224.1| ATP synthase CF1 alpha
            subunit (chloroplast) [Cycas revoluta]
          Length = 507

 Score =  547 bits (1410), Expect = e-153
 Identities = 278/318 (87%), Positives = 304/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QI+QYN EV+V+N+GIVLQVGDGIARIHGL EVMAGELVEFEDGT
Sbjct: 1    MVTIRPDEISSIIRKQIKQYNQEVEVVNIGIVLQVGDGIARIHGLDEVMAGELVEFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDGL I+EGSSV+ATGKIAQIPVSDA+ GR+V+ALAQPIDGRG
Sbjct: 61   VGIALNLESNNVGAVLMGDGLMIQEGSSVRATGKIAQIPVSDAYSGRVVNALAQPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             I+ASE R IESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KITASESRSIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQ+VICVYVAIGQKASSVAQVV   +ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKGQDVICVYVAIGQKASSVAQVVNIFQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYK+QHTLIIYDDLSKQA+AYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKEQHTLIIYDDLSKQARAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKL++QLGEGS+TALP
Sbjct: 301  RAAKLSSQLGEGSMTALP 318


>ref|NP_777397.1| ATP synthase CF1 alpha subunit [Anthoceros formosae]
            gi|48474822|sp|Q85AU2.1|ATPA_ANTFO RecName: Full=ATP
            synthase subunit alpha, chloroplastic; AltName: Full=ATP
            synthase F1 sector subunit alpha; AltName: Full=F-ATPase
            subunit alpha gi|27807858|dbj|BAC55333.1| ATPase alpha
            subunit (chloroplast) [Anthoceros formosae]
            gi|27807959|dbj|BAC55424.1| ATPase alpha subunit
            [Anthoceros formosae]
          Length = 507

 Score =  547 bits (1409), Expect = e-153
 Identities = 278/318 (87%), Positives = 304/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+ IRPDEIS++IR QIEQYN EV+VIN+G VLQVGDGIARI+GL +VMAGELVEFEDGT
Sbjct: 1    MVNIRPDEISNIIRKQIEQYNQEVKVINIGTVLQVGDGIARIYGLDKVMAGELVEFEDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE++NVGVVLMGDGL+I+EGSSV+ATGKIAQIPVSDA+LGR+V+ALAQPIDG+G
Sbjct: 61   VGIALNLESDNVGVVLMGDGLSIQEGSSVEATGKIAQIPVSDAYLGRVVNALAQPIDGKG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             I A E RLIESPAPGIISRRSVYEP+QTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  QIPAYEFRLIESPAPGIISRRSVYEPMQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTILNQKGQNVICVYVAIGQKASSVAQVV T  ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTILNQKGQNVICVYVAIGQKASSVAQVVNTFEERGALEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY+KQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKL++QLGEGS+TALP
Sbjct: 301  RAAKLSSQLGEGSMTALP 318


>ref|YP_007353900.1| ATP synthase CF1 alpha subunit (chloroplast) [Tectona grandis]
            gi|438687589|emb|CCP47115.1| ATP synthase CF1 alpha
            subunit (chloroplast) [Tectona grandis]
            gi|438688273|emb|CCP47204.1| ATP synthase CF1 alpha
            subunit (chloroplast) [Tectona grandis]
            gi|438688397|emb|CCP47293.1| ATP synthase CF1 alpha
            subunit (chloroplast) [Tectona grandis]
          Length = 507

 Score =  547 bits (1409), Expect = e-153
 Identities = 278/318 (87%), Positives = 305/318 (95%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIR DEIS++IR++IEQYN EV+++N G VLQVGDGIARIHGL EVMAGELVEFE+GT
Sbjct: 1    MVTIRADEISNIIRERIEQYNREVKIVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            IGIALNLE+NNVGVVLMGDGL I+EGSSVKATG+IAQIPVS+AFLGR+++ALA+PIDGRG
Sbjct: 61   IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAFLGRVINALAKPIDGRG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  EISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTILNQ+GQNVICVYVAIGQKASSVAQVV TL+ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMY+KQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAK ++ LGEGS+TALP
Sbjct: 301  RAAKSSSSLGEGSMTALP 318


>ref|YP_008965096.1| ATP synthase CF1 alpha chain (chloroplast) [Nageia nagi]
            gi|347977791|dbj|BAK86649.1| ATP synthase CF1 alpha chain
            (chloroplast) [Nageia nagi] gi|563317681|dbj|BAO19780.1|
            ATP synthase CF1 alpha chain (chloroplast) [Nageia nagi]
          Length = 508

 Score =  547 bits (1409), Expect = e-153
 Identities = 279/318 (87%), Positives = 302/318 (94%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEIS++IR QIEQYNNEV+V+N+G VLQVGDGIARIHGL ++MAGELVEF DGT
Sbjct: 1    MVTIRPDEISNMIRKQIEQYNNEVKVVNIGTVLQVGDGIARIHGLDKIMAGELVEFVDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDGL I+EGSSVKATGKIAQIPVS+A+LGR+V+ALAQPIDG+ 
Sbjct: 61   VGIALNLESNNVGAVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAQPIDGKD 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KISASEFRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQNVICVYVAIGQKASSVAQVV T RE  ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKGQNVICVYVAIGQKASSVAQVVNTFRECGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYK+QHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKEQHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+QLG GSLTALP
Sbjct: 301  RAAKLNSQLGGGSLTALP 318


>gb|AER45654.1| atpA (chloroplast) [Agathis australis]
          Length = 507

 Score =  546 bits (1407), Expect = e-152
 Identities = 279/318 (87%), Positives = 302/318 (94%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M TIRPDEIS++IR QIEQYNNEV+V+N+G VLQVGDGIARIHGL +VMAGELVEF DGT
Sbjct: 1    MATIRPDEISNMIRKQIEQYNNEVKVVNIGTVLQVGDGIARIHGLDKVMAGELVEFVDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDGL I+EGSSVKATGKIAQIPVSDA+LGR+V+ALAQPIDG+G
Sbjct: 61   VGIALNLESNNVGAVLMGDGLMIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGKG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIES APGIISRRS+YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KISASEFRLIESSAPGIISRRSIYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQNVICVYVAIGQKASSVAQVV T R+  ++EYTIVV+E AD+PATLQYLAP
Sbjct: 181  TDTIINQKGQNVICVYVAIGQKASSVAQVVNTFRDCGAMEYTIVVAENADAPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYK+QHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKEQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+QLG GSLTALP
Sbjct: 301  RAAKLNSQLGGGSLTALP 318


>ref|YP_004891344.1| ATP synthase CF1 alpha chain (chloroplast) [Cephalotaxus wilsoniana]
            gi|350529183|dbj|BAL03725.1| ATP synthase CF1 alpha chain
            (chloroplast) [Cephalotaxus wilsoniana]
          Length = 507

 Score =  546 bits (1407), Expect = e-152
 Identities = 279/318 (87%), Positives = 302/318 (94%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M+TIRPDEISS+IR QIEQYNNEV+V+N+G VLQVGDGIARIHGL +VMAGELVEF DGT
Sbjct: 1    MVTIRPDEISSMIRKQIEQYNNEVKVVNIGTVLQVGDGIARIHGLDKVMAGELVEFLDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDGL I+EGSSV+ATGKIAQIPVSD++LGR+V+ALA PIDG+G
Sbjct: 61   VGIALNLESNNVGAVLMGDGLMIQEGSSVRATGKIAQIPVSDSYLGRVVNALAVPIDGKG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KISASEFRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQK QNVICVYVAIGQKASSVAQVV T +ER ++EYTIVV+E ADSPATLQYLAP
Sbjct: 181  TDTIINQKDQNVICVYVAIGQKASSVAQVVNTFQERGAMEYTIVVAETADSPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYK+QHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKEQHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+QLG GSLTALP
Sbjct: 301  RAAKLNSQLGGGSLTALP 318


>ref|YP_008965015.1| ATP synthase CF1 alpha chain (chloroplast) [Agathis dammara]
            gi|347977266|dbj|BAK86750.1| ATP synthase CF1 alpha chain
            (chloroplast) [Agathis dammara]
            gi|563317599|dbj|BAO19699.1| ATP synthase CF1 alpha chain
            (chloroplast) [Agathis dammara]
          Length = 507

 Score =  546 bits (1407), Expect = e-152
 Identities = 279/318 (87%), Positives = 302/318 (94%)
 Frame = +3

Query: 858  MITIRPDEISSLIRDQIEQYNNEVQVINMGIVLQVGDGIARIHGLCEVMAGELVEFEDGT 1037
            M TIRPDEIS++IR QIEQYNNEV+V+N+G VLQVGDGIARIHGL +VMAGELVEF DGT
Sbjct: 1    MATIRPDEISNMIRKQIEQYNNEVKVVNIGTVLQVGDGIARIHGLDKVMAGELVEFVDGT 60

Query: 1038 IGIALNLETNNVGVVLMGDGLTIKEGSSVKATGKIAQIPVSDAFLGRIVDALAQPIDGRG 1217
            +GIALNLE+NNVG VLMGDGL I+EGSSVKATGKIAQIPVSDA+LGR+V+ALAQPIDG+G
Sbjct: 61   VGIALNLESNNVGAVLMGDGLMIQEGSSVKATGKIAQIPVSDAYLGRVVNALAQPIDGKG 120

Query: 1218 PISASEVRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 1397
             ISASE RLIES APGIISRRS+YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA
Sbjct: 121  KISASEFRLIESSAPGIISRRSIYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 180

Query: 1398 TDTILNQKGQNVICVYVAIGQKASSVAQVVKTLRERSSIEYTIVVSEPADSPATLQYLAP 1577
            TDTI+NQKGQNVICVYVAIGQKASSVAQVV T R+  ++EYTIVV+E AD+PATLQYLAP
Sbjct: 181  TDTIINQKGQNVICVYVAIGQKASSVAQVVNTFRDCGAMEYTIVVAENADAPATLQYLAP 240

Query: 1578 YTGAALAEYFMYKKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFFLHSRLLE 1757
            YTGAALAEYFMYK+QHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF+LHSRLLE
Sbjct: 241  YTGAALAEYFMYKEQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300

Query: 1758 RAAKLNNQLGEGSLTALP 1811
            RAAKLN+QLG GSLTALP
Sbjct: 301  RAAKLNSQLGGGSLTALP 318