BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00009166
         (533 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [A...   141   1e-31
ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [A...   134   2e-29
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   133   2e-29
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   131   1e-28
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   130   1e-28
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   130   2e-28
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   129   3e-28
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       129   5e-28
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   127   2e-27
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   127   2e-27
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...   127   2e-27
emb|CBI21038.3| unnamed protein product [Vitis vinifera]              125   8e-27
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   124   1e-26
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   124   1e-26
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   124   1e-26
gb|ESW09024.1| hypothetical protein PHAVU_009G093700g [Phaseolus...   122   4e-26
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc...   121   9e-26
ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polyme...   121   1e-25
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   121   1e-25
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   120   1e-25

>ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda]
           gi|548844121|gb|ERN03747.1| hypothetical protein
           AMTR_s00078p00055040 [Amborella trichopoda]
          Length = 1207

 Score =  141 bits (355), Expect = 1e-31
 Identities = 79/174 (45%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
 Frame = +1

Query: 22  ERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYR 201
           E+ ++ + ++L   P IYYRT +DD HVTVPF LLDD+DPWIRT DFT N A GRC CY+
Sbjct: 213 EQASLGMLVQLSSSPLIYYRTDNDDTHVTVPFLLLDDEDPWIRTTDFTGNGAVGRCRCYK 272

Query: 202 VSLSPRTGHTMEQAKRYFSRYHLLGETV-ERVF---DSSLRVRPE-GHVVPRGLLFFTIP 366
           +S SPR G  ME+A+ YF    +L   V ++V    D   +V  E G + P    FF++ 
Sbjct: 273 ISFSPRYGLKMEKARDYFRECRILEHGVLQKVLGPQDYPPKVSTEPGFMKPMRNHFFSVN 332

Query: 367 GQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHS 528
            Q+ + FE  YL+  L+HKGI+N H L   F+ +L   S  +  +T ALRHM+S
Sbjct: 333 IQEGLSFEVVYLVTCLVHKGIINQHRLCKEFFDLLRSQSPEV--NTAALRHMYS 384


>ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [Amborella trichopoda]
           gi|548844122|gb|ERN03748.1| hypothetical protein
           AMTR_s00078p00056260 [Amborella trichopoda]
          Length = 1207

 Score =  134 bits (336), Expect = 2e-29
 Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
 Frame = +1

Query: 22  ERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYR 201
           E+ ++ + ++L   P IYYRT +DD HVTVPF LLDD+DPWIRT DF+ N A GRC CY+
Sbjct: 213 EQTSLGMLMQLSSSPLIYYRTDNDDTHVTVPFPLLDDEDPWIRTTDFSVNGALGRCHCYK 272

Query: 202 VSLSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-----GHVVPRGLLFFTIP 366
           +S SPR G   E+A+ YF    +L   V +    SL   P+     G +      FF++ 
Sbjct: 273 ISFSPRHGLIREKARDYFRECRILEHEVLQKDLGSLGYPPKVTTEHGFMEQMRDHFFSVN 332

Query: 367 GQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHS 528
            Q+ + FE  YL+  L+HKGI+N H L   F+ +L   S+ +  +T ALRHM+S
Sbjct: 333 IQQGLCFEIVYLVTCLVHKGIINQHRLCKEFFDLLRSQSSEV--NTAALRHMYS 384


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  133 bits (335), Expect = 2e-29
 Identities = 71/175 (40%), Positives = 104/175 (59%)
 Frame = +1

Query: 7   VKVSMERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGR 186
           +K   +   +V+ ++L   PS++YRTADDDI V VPF LLDDDDPWIRT DFT + A GR
Sbjct: 207 IKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIGR 266

Query: 187 CLCYRVSLSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIP 366
           C  YRVS+ PR G  +++A  +     +  + + R     +   PE + +P    FF I 
Sbjct: 267 CNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPL--HVTAEPE-YEMPMSDPFFCIH 323

Query: 367 GQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            ++ + F   +L+N ++HKGI N H L+D F+ +L   + PL  +  ALRH+ SY
Sbjct: 324 HEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLL--RNQPLDVNIAALRHICSY 376


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  131 bits (329), Expect = 1e-28
 Identities = 75/179 (41%), Positives = 106/179 (59%), Gaps = 4/179 (2%)
 Frame = +1

Query: 7   VKVSMERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGR 186
           V+   +  +++L ++L   P +YYRTADDDI  TVPF LLDDDDPWIRT DFT + A GR
Sbjct: 207 VRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGR 266

Query: 187 CLCYRVSLSPRTGHTMEQAKRYFSRYHLLGETVERVFDS---SLRVRPEGHV-VPRGLLF 354
           C  YR+S+ PR G  +++A  Y     L    V  + DS    LRVR E    +P    F
Sbjct: 267 CNSYRISIPPRYGAKLKKAMDY-----LRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPF 321

Query: 355 FTIPGQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
           F I  ++ I F   +L+N ++HKGI+N H L+D+F+ +L      +  +  AL+H+ SY
Sbjct: 322 FCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI--NIAALKHICSY 378


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
           max] gi|571459266|ref|XP_006581359.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
           max]
          Length = 1204

 Score =  130 bits (328), Expect = 1e-28
 Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 1/167 (0%)
 Frame = +1

Query: 34  IVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLS 213
           +V+ + L   P ++YRTADDDI  +VPF LLDDDDPWIRT DFT + A GRC  YR+S+ 
Sbjct: 216 LVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIP 275

Query: 214 PRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPGQKWIRFE 390
           PR G  + +A  Y     +  +  E     +LR   E    VP    FF I  QK I F+
Sbjct: 276 PRHGAKLMKAMLYLKGQRV--QMQELALKQTLRTLNEPDFGVPMSDAFFYIHFQKDIAFD 333

Query: 391 SQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
             +L+N ++HKGI N H L+DRF+ +L   + P   +  AL+H+ SY
Sbjct: 334 IMFLVNAIVHKGIFNQHRLSDRFFELL--KNQPKELNVAALKHLCSY 378


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1198

 Score =  130 bits (326), Expect = 2e-28
 Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
 Frame = +1

Query: 7   VKVSMERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGR 186
           +K   E   +VL ++L   P ++YRTADDDI V+VPF LLDDDDPWIRT DFT + A GR
Sbjct: 207 IKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGR 266

Query: 187 CLCYRVSLSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTI 363
           C  YRVS+ PR G  + +A  +     +  E + R     +R+R E    +P    FF I
Sbjct: 267 CHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRR----PIRIRDEPDFGMPMTDPFFCI 322

Query: 364 PGQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
             ++ I F+  +L+N ++HKGI N H L++ F+ +L   + P   +  AL+H++ Y
Sbjct: 323 HHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLL--RNQPTEVNVAALKHIYPY 376


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
           max] gi|571449461|ref|XP_006578148.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
           max]
          Length = 1204

 Score =  129 bits (325), Expect = 3e-28
 Identities = 70/167 (41%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
 Frame = +1

Query: 34  IVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLS 213
           +V+ + L   P ++YRTADDDI  +VPF LLDDDDPWIRT DFT + A GRC  YR+S+ 
Sbjct: 216 LVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIP 275

Query: 214 PRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPGQKWIRFE 390
           PR G  + +A  Y     +  +  E     +LR + E    +P    FF +  QK I F+
Sbjct: 276 PRHGAKLMKAMLYLKGQRV--QIQELPLKQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFD 333

Query: 391 SQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
             +L+N ++HKGI N H L+DRF+ +L   + P   +  AL+H+ SY
Sbjct: 334 IMFLVNAIVHKGIFNQHRLSDRFFELL--RNQPKELNVAALKHLCSY 378


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  129 bits (323), Expect = 5e-28
 Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
 Frame = +1

Query: 7   VKVSMERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGR 186
           +K   +   +V+ + L   P ++YRTADDDI V+VPF LLDDDDPWIRT DFT + A GR
Sbjct: 203 IKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTPSGAIGR 262

Query: 187 CLCYRVSLSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-GHVVPRGLLFFTI 363
           C  YRVS+ PR G  +++A  Y  R   + ET  R    +LR++ E    VP     F +
Sbjct: 263 CNSYRVSIPPRHGSKLKKAMSYL-RERRVQETPLR---KALRIQSEPDFAVPMSDPIFYV 318

Query: 364 PGQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            G+  I FE  +LLN ++HKGI N H+++D  + +    + P   +  AL+H+ SY
Sbjct: 319 HGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLF--RNQPREINLAALKHISSY 372


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
           sinensis]
          Length = 1025

 Score =  127 bits (318), Expect = 2e-27
 Identities = 69/175 (39%), Positives = 103/175 (58%)
 Frame = +1

Query: 7   VKVSMERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGR 186
           VK   E   + + ++L   P ++YRTADDDI V VPF +LDDDDPWIRT DFT + A GR
Sbjct: 207 VKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGR 266

Query: 187 CLCYRVSLSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIP 366
           C  YR+S+S R    + +   Y     +  +++ R    ++R  P+   VP    FF I 
Sbjct: 267 CNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI--TIREEPD-FEVPMSDPFFCIH 323

Query: 367 GQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            ++ I FE  +L+N ++HKGI+N H L+D F+ +L   S  +  +  AL+H++SY
Sbjct: 324 YEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV--NVAALKHIYSY 376


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
           sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
           sinensis]
          Length = 1197

 Score =  127 bits (318), Expect = 2e-27
 Identities = 69/175 (39%), Positives = 103/175 (58%)
 Frame = +1

Query: 7   VKVSMERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGR 186
           VK   E   + + ++L   P ++YRTADDDI V VPF +LDDDDPWIRT DFT + A GR
Sbjct: 207 VKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGR 266

Query: 187 CLCYRVSLSPRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIP 366
           C  YR+S+S R    + +   Y     +  +++ R    ++R  P+   VP    FF I 
Sbjct: 267 CNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI--TIREEPD-FEVPMSDPFFCIH 323

Query: 367 GQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            ++ I FE  +L+N ++HKGI+N H L+D F+ +L   S  +  +  AL+H++SY
Sbjct: 324 YEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREV--NVAALKHIYSY 376


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score =  127 bits (318), Expect = 2e-27
 Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
 Frame = +1

Query: 37  VLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLSP 216
           V+ + L   P ++YRTADDDI  +V F LLDDDDPWIRT DFT + A GRC  YR+S+ P
Sbjct: 217 VVLLHLASSPLVWYRTADDDIEESVSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPP 276

Query: 217 RTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPGQKWIRFES 393
           R G  + +A  Y +   +    ++R     LR++ E +  VP    FF I  Q+ I F+ 
Sbjct: 277 RHGAKLMKAMAYLNFQRVQEFPLKR----PLRIQDEPNFGVPMSDDFFYIHCQEGITFDI 332

Query: 394 QYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            +L+N +IHKGILN +SL+DRF+ +L   + P   +  AL+H+ SY
Sbjct: 333 MFLVNAVIHKGILNPYSLSDRFFEVL--RNQPQEVNVAALKHLCSY 376


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  125 bits (313), Expect = 8e-27
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 4/166 (2%)
 Frame = +1

Query: 46  IELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLSPRTG 225
           I L   P +YYRTADDDI  TVPF LLDDDDPWIRT DFT + A GRC  YR+S+ PR G
Sbjct: 58  ILLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYG 117

Query: 226 HTMEQAKRYFSRYHLLGETVERVFDS---SLRVRPEGHV-VPRGLLFFTIPGQKWIRFES 393
             +++A  Y     L    V  + DS    LRVR E    +P    FF I  ++ I F  
Sbjct: 118 AKLKKAMDY-----LRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRV 172

Query: 394 QYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            +L+N ++HKGI+N H L+D+F+ +L      +  +  AL+H+ SY
Sbjct: 173 MFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI--NIAALKHICSY 216


>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
           arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
           arietinum]
          Length = 1201

 Score =  124 bits (312), Expect = 1e-26
 Identities = 72/168 (42%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
 Frame = +1

Query: 34  IVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLS 213
           +V+ + L   P ++YRTADDDI  +V   LLDDDDPWIRT DFT + A GRC  YR+S+ 
Sbjct: 216 LVVLLHLASSPLVWYRTADDDIEESVTIDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIP 275

Query: 214 PRTGHTMEQAKRYFSRYHLLGETVERV-FDSSLRVRPEGHV-VPRGLLFFTIPGQKWIRF 387
           PR G  + +A  Y     L  + V+RV     LR+  E    VP    FF I  QK I F
Sbjct: 276 PRYGAKLNKAMEY-----LRCQRVQRVPLKRPLRILNEPDFGVPMSSAFFYIDFQKDITF 330

Query: 388 ESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
           +  +L+N ++HKGI N +SL+ +F+ +L   S P   +  AL+H+ SY
Sbjct: 331 DIMFLINAIVHKGIFNQYSLSYKFFELL--RSQPKDVNVAALKHLCSY 376


>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
           arietinum]
          Length = 1247

 Score =  124 bits (312), Expect = 1e-26
 Identities = 72/168 (42%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
 Frame = +1

Query: 34  IVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLS 213
           +V+ + L   P ++YRTADDDI  +V   LLDDDDPWIRT DFT + A GRC  YR+S+ 
Sbjct: 262 LVVLLHLASSPLVWYRTADDDIEESVTIDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIP 321

Query: 214 PRTGHTMEQAKRYFSRYHLLGETVERV-FDSSLRVRPEGHV-VPRGLLFFTIPGQKWIRF 387
           PR G  + +A  Y     L  + V+RV     LR+  E    VP    FF I  QK I F
Sbjct: 322 PRYGAKLNKAMEY-----LRCQRVQRVPLKRPLRILNEPDFGVPMSSAFFYIDFQKDITF 376

Query: 388 ESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
           +  +L+N ++HKGI N +SL+ +F+ +L   S P   +  AL+H+ SY
Sbjct: 377 DIMFLINAIVHKGIFNQYSLSYKFFELL--RSQPKDVNVAALKHLCSY 422


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1200

 Score =  124 bits (311), Expect = 1e-26
 Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 3/173 (1%)
 Frame = +1

Query: 22  ERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYR 201
           E   +VL ++L   P ++YRTADDDI   VPF LLDDDDPWIRT DFT + A GRC  YR
Sbjct: 212 ETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYR 271

Query: 202 VSLSPRTGHTMEQAKRYFS--RYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPGQ 372
           VS+ PR G  + +A +Y    R  +L E   R     +R+  E    +P    FF I  +
Sbjct: 272 VSIPPRHGSKLRKAVKYLKERRVQVLQEENHR---RRIRILDEPDFGMPMSDPFFCIHHK 328

Query: 373 KWIRFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
           + I FE  +L+N ++HKGI N H L++ F+ +L    T +  +  AL+H+ +Y
Sbjct: 329 EGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEV--NVSALKHICTY 379


>gb|ESW09024.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
          Length = 1204

 Score =  122 bits (307), Expect = 4e-26
 Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
 Frame = +1

Query: 34  IVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLS 213
           +V+ + L   P ++YRTA+DDI   VPF LLDDDDPWIRT DFT + A GRC  Y++S+ 
Sbjct: 216 LVVLLHLASSPWVWYRTAEDDIEDLVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYKISIP 275

Query: 214 PRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPGQKWIRFE 390
           PR G  + +A  Y     +  +  E     +LR   E     P    FF I  Q  I F+
Sbjct: 276 PRHGAKLMKAMLYLKGQRV--QMQELPLKQTLRALNEPDFGTPMSNPFFYIDYQVGITFD 333

Query: 391 SQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
             +L+N ++HKGI N H L+DRF+ +L   + P   +  AL+H+ SY
Sbjct: 334 IMFLVNAIVHKGIFNQHRLSDRFFELL--RNQPKELNVAALKHLCSY 378


>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
           gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
           [Medicago truncatula]
          Length = 1188

 Score =  121 bits (304), Expect = 9e-26
 Identities = 65/166 (39%), Positives = 99/166 (59%)
 Frame = +1

Query: 34  IVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLS 213
           +V+ + L   P ++YRTADDDI  +V   LLDDDDPWIRT DFT + A GRC  YR+S+ 
Sbjct: 203 LVVLLRLASSPLVWYRTADDDIDESVTIDLLDDDDPWIRTTDFTPSGAIGRCNYYRISIP 262

Query: 214 PRTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIPGQKWIRFES 393
           PR G  + +A  Y  R  +    ++R     ++  P+   VP    FF I  QK I F+ 
Sbjct: 263 PRHGAKLNKALEYLRRQRVPRIPLKR--PPKIQNEPD-FGVPMSDAFFYIDSQKDISFDI 319

Query: 394 QYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            +L+N ++H+GI N +SL+++F+ +L   + P   +  AL+H+ +Y
Sbjct: 320 MFLINAIVHRGIFNQYSLSNKFFELL--KNQPKDVNVAALKHICTY 363


>ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
           [Brachypodium distachyon]
          Length = 1208

 Score =  121 bits (303), Expect = 1e-25
 Identities = 67/156 (42%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
 Frame = +1

Query: 13  VSMERGTIVLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCL 192
           V + R    L + L   P +YYRTADDDIHV+VPF LLDDDDPWIRT D T + A GRC 
Sbjct: 218 VRVYRNDCSLLLRLTAAPRVYYRTADDDIHVSVPFDLLDDDDPWIRTTDITMSGAIGRCG 277

Query: 193 CYRVSLSPRTGHTMEQAKRYF--SRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTI 363
            YR+ ++PR    M++A  Y    R  ++  TV       L+VR E     P   LFF +
Sbjct: 278 MYRIKVAPRKWIMMDRALAYMKGQRVLIVESTVWSGPRRGLKVRDEPEFEEPMQDLFFCV 337

Query: 364 PGQKWIRFESQYLLNGLIHKGILNYHSLNDRFYRML 471
              + ++F   +L+N L+HKGI+N H L   F  +L
Sbjct: 338 QHAEGLKFPVLFLVNALVHKGIINQHQLTPEFLSLL 373


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
           gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
           6 [Cucumis sativus]
          Length = 1197

 Score =  121 bits (303), Expect = 1e-25
 Identities = 70/170 (41%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
 Frame = +1

Query: 37  VLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLSP 216
           V+ ++L   P I+YRTADDDI   VP+ LLDDDDPWIRT DFT + A GRC  +RVS+ P
Sbjct: 216 VILLQLTASPCIWYRTADDDIAKLVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPP 275

Query: 217 RTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-----GHVVPRGLLFFTIPGQKWI 381
           R G  +  A  Y           +RV   SL   P+      + V     FF I  +K I
Sbjct: 276 RYGIKLNNAMNYLKE--------QRVHQVSLNRPPKILNEPDYGVQMTDHFFCILYKKDI 327

Query: 382 RFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            FE  +L+N ++HKGI+N H ++DRF+ +L   + P   +  AL H+H++
Sbjct: 328 SFEILFLVNAVMHKGIINQHQMSDRFFDLL--RNQPNEVNLAALSHIHAF 375


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  120 bits (302), Expect = 1e-25
 Identities = 70/170 (41%), Positives = 97/170 (57%), Gaps = 5/170 (2%)
 Frame = +1

Query: 37  VLFIELLCPPSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRVSLSP 216
           V+ ++L   P I+YRTADDDI   VP+ LLDDDDPWIRT DFT + A GRC  +RVS+ P
Sbjct: 216 VILLQLTSSPCIWYRTADDDIAKLVPYDLLDDDDPWIRTTDFTISGAIGRCNTFRVSVPP 275

Query: 217 RTGHTMEQAKRYFSRYHLLGETVERVFDSSLRVRPE-----GHVVPRGLLFFTIPGQKWI 381
           R G  +  A  Y           +RV   SL   P+      + V     FF I  +K I
Sbjct: 276 RYGIKLNNAMNYLKE--------QRVHQVSLNRPPKILNEPDYGVQMTDHFFCILYKKDI 327

Query: 382 RFESQYLLNGLIHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 531
            FE  +L+N ++HKGI+N H ++DRF+ +L   + P   +  AL H+H++
Sbjct: 328 SFEILFLVNAVMHKGIINQHQMSDRFFDLL--RNQPNEVNLAALSHIHAF 375