BLASTX nr result
ID: Ephedra28_contig00008646
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00008646
(983 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A... 261 3e-67
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 244 3e-62
gb|AGQ44775.1| general transcription factor [Camellia sinensis] 238 3e-60
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] 236 1e-59
ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transc... 233 1e-58
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr... 230 7e-58
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr... 230 7e-58
gb|ESW16172.1| hypothetical protein PHAVU_007G134900g [Phaseolus... 228 2e-57
ref|XP_003591640.1| General transcription factor IIH subunit [Me... 228 2e-57
gb|ABE86684.1| general transcription factor IIH component, relat... 228 2e-57
ref|XP_006589332.1| PREDICTED: probable RNA polymerase II transc... 228 4e-57
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc... 227 5e-57
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g... 226 1e-56
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc... 223 7e-56
ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transc... 223 9e-56
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc... 221 4e-55
ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc... 219 1e-54
ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transc... 219 1e-54
ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transc... 219 2e-54
ref|NP_175971.3| probable RNA polymerase II transcription factor... 218 3e-54
>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
gi|548861733|gb|ERN19104.1| hypothetical protein
AMTR_s00061p00135540 [Amborella trichopoda]
Length = 626
Score = 261 bits (667), Expect = 3e-67
Identities = 140/306 (45%), Positives = 200/306 (65%), Gaps = 2/306 (0%)
Frame = -1
Query: 917 LVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 738
L +EARRKIR+VDP VDMA + DDYSHL GHG +D +E +D ++ KRTL++D+NR
Sbjct: 279 LASEARRKIRRVDPTVDMAADLGDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNR 338
Query: 737 HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 558
HAAVVLEG+ L D + G+TRTVAEAL R++Q AEVA T D +++ + +M++IE
Sbjct: 339 HAAVVLEGRTL-DVELGDTRTVAEALARSKQ--AEVATETSDETENQKRLERVSQMTEIE 395
Query: 557 DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE--HFNPDEIYGSLAYAL 384
DLQA ++ PYA LCI+D R+YF SQ+A+ A D + H + + Y SL +
Sbjct: 396 DLQAPRSLPYAPLCIKDPREYFDSQRANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQI 455
Query: 383 LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQW 204
L ++ G KDPI+ + A+K N+++Q +SST GK Q V LP + +++L + W
Sbjct: 456 LEVKSVGFKDPIVIPDLALKVLNDVNQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHW 515
Query: 203 KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 24
+IQE+L FW+ + +TF+ K+ R+KDAMAQ Y L K S + E+RH++SLL+ P
Sbjct: 516 TSIQELLRHFWSSYPLTTTFLHAKVNRVKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKP 575
Query: 23 MLQALD 6
MLQ LD
Sbjct: 576 MLQVLD 581
>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
protein product [Vitis vinifera]
Length = 602
Score = 244 bits (624), Expect = 3e-62
Identities = 137/307 (44%), Positives = 188/307 (61%), Gaps = 2/307 (0%)
Frame = -1
Query: 917 LVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 738
L NEARRKIR+VDP +DM + DDY HL HG +D +E ID Q +RTL +D+NR
Sbjct: 275 LANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNR 334
Query: 737 HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 558
HAAVVLEG+ + D + +TRTVAEAL ++++ E A D + M++IE
Sbjct: 335 HAAVVLEGRPI-DVELEDTRTVAEALAKSKR--VEAANEKSDGSVTRERLERISRMTEIE 391
Query: 557 DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEH--FNPDEIYGSLAYAL 384
DLQA + P+A+LCI+D R YF SQQA+ + D K + E YGSL +
Sbjct: 392 DLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFI 451
Query: 383 LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQW 204
I+ GL DPI+ + A+K N L+Q ISSTK+H GK Q+ V LP +++L W
Sbjct: 452 SEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHW 511
Query: 203 KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 24
+IQE+L FW+ + +T++ K RLKDAM+Q Y LQ K S + ++RH++SLL+ P
Sbjct: 512 TSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQP 571
Query: 23 MLQALDA 3
MLQALDA
Sbjct: 572 MLQALDA 578
>gb|AGQ44775.1| general transcription factor [Camellia sinensis]
Length = 340
Score = 238 bits (606), Expect = 3e-60
Identities = 131/305 (42%), Positives = 189/305 (61%), Gaps = 2/305 (0%)
Frame = -1
Query: 911 NEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINRHA 732
+EARRKIR+VDP +DM + DDY HL HG ++D ++ ID + +R+L + +NRH
Sbjct: 15 SEARRKIRRVDPTLDMEADEGDDYIHLPDHGLSRDDSKDAIDSPYEEYRRSLSQVLNRHG 74
Query: 731 AVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIEDL 552
AVVLEG+++ D + G+TR+VAEAL R++Q E+A D +++ D ++++IEDL
Sbjct: 75 AVVLEGRSI-DVELGDTRSVAEALARSKQ--VELANEASDGNANQERLDRISQLAEIEDL 131
Query: 551 QATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFN--PDEIYGSLAYALLG 378
Q + P A L I+D R YF S QA+ + D + N E YGSL +
Sbjct: 132 QPPRDPPLAPLFIKDPRDYFDSHQANALKTLGDTLVETRQMKCNLSTSEAYGSLRECISE 191
Query: 377 IRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQWKT 198
I+ +GL DPI+ E A K N L+Q ISSTKYH GK Q+ V LP +D+L W +
Sbjct: 192 IKIAGLSDPIVKPEIAFKVFNGLTQNISSTKYHLGKNPQESVLDRLPNITKDELLHHWTS 251
Query: 197 IQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHPML 18
IQE+L FW+ + ++++ K+ RLKDAM+Q Y LQ K S + ++RH++SLL+ PML
Sbjct: 252 IQELLKHFWSSYPITTSYLYVKVGRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPML 311
Query: 17 QALDA 3
QALDA
Sbjct: 312 QALDA 316
>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
Length = 735
Score = 236 bits (601), Expect = 1e-59
Identities = 132/303 (43%), Positives = 184/303 (60%), Gaps = 2/303 (0%)
Frame = -1
Query: 917 LVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 738
L +EARRKIR+VDP +DM + DDY HL HG +D +E ID Q +RTL +D+NR
Sbjct: 318 LASEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNR 377
Query: 737 HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 558
HAAVVLEG+ + D + +TRTVAEAL ++++ E A D + M++IE
Sbjct: 378 HAAVVLEGRPI-DVELEDTRTVAEALAKSKR--VEAANEKSDGSVTRERLERISRMTEIE 434
Query: 557 DLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEH--FNPDEIYGSLAYAL 384
DLQA + P+A+LCI+D R YF SQQA+ + D K + E YGSL +
Sbjct: 435 DLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFI 494
Query: 383 LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQW 204
I+ GL DPI+ + A+K N L+Q ISSTK+H GK Q+ V LP +++L W
Sbjct: 495 SEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHW 554
Query: 203 KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 24
+IQE+L FW+ + +T++ K RLKDAM+Q Y LQ K S + ++RH++SLL+ P
Sbjct: 555 TSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQP 614
Query: 23 MLQ 15
MLQ
Sbjct: 615 MLQ 617
>ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Cicer arietinum]
Length = 586
Score = 233 bits (593), Expect = 1e-58
Identities = 129/312 (41%), Positives = 189/312 (60%), Gaps = 3/312 (0%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
D E L NEAR+K+R+VDP +DM + DDY+HL HG +D +E + +RTL++
Sbjct: 262 DDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETAEAQNTFYRRTLLQ 321
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NR + VVLEG+ L D D + RTVAE L R +Q++ D + +E ++ +M
Sbjct: 322 DLNRQSEVVLEGKTL-DMDMEHPRTVAEVLARRKQES--------DGVIEEERRNRISKM 372
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGS 399
++IEDLQA +A LCI+D R YF SQQ + + + D GK + + +E YGS
Sbjct: 373 TQIEDLQAQDDHRFAPLCIKDPRDYFDSQQVNALKSLDDS-LAGKEQIRCNLGSEEAYGS 431
Query: 398 LAYALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDK 219
L ++ I+ GL DP+L+ E A K N L++ ISSTK H GK +Q+ V LP ++K
Sbjct: 432 LRESISKIKAIGLMDPLLSPEVAFKVLNGLTKNISSTKSHLGKSSQESVLDILPNTTKEK 491
Query: 218 LREQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEIS 39
L + W QE+L FW+ V + + NK +R+KDA++Q Y L+ K S K + RH++S
Sbjct: 492 LLDHWVCSQELLRHFWSSYPVTTQNLVNKTKRMKDAISQIYSKLEEIKVSAKSDLRHQVS 551
Query: 38 LLIHPMLQALDA 3
L++HPM QALDA
Sbjct: 552 LVVHPMQQALDA 563
>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
gi|557555944|gb|ESR65958.1| hypothetical protein
CICLE_v10007802mg [Citrus clementina]
Length = 564
Score = 230 bits (586), Expect = 7e-58
Identities = 126/309 (40%), Positives = 187/309 (60%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
+ + L NE R+KIR+VDP +DM + DDY+HL HG +D +E + + +RTL++
Sbjct: 238 EDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQ 297
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NRHAAVVLEG+ + +TR +AEAL R+++ N DN ++E D +
Sbjct: 298 DLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRGNEGA-----DNNANEERLDRTPRV 352
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAY 390
++IEDLQA P A L I+D R+YF SQQA+ + A D + K + E YGS+
Sbjct: 353 AEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQASMKCS-LSRQEAYGSVRD 411
Query: 389 ALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLRE 210
A+ I++ GL DPI+N E A+K + L+ ISS KYH GK ++ V LP ++KL
Sbjct: 412 AISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLY 471
Query: 209 QWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLI 30
W +IQE+L FW+ + + ++ +K+ RLKDA++ Y L+ K S + RH++SLL+
Sbjct: 472 HWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLV 531
Query: 29 HPMLQALDA 3
PM QALDA
Sbjct: 532 RPMQQALDA 540
>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
gi|557555943|gb|ESR65957.1| hypothetical protein
CICLE_v10007802mg [Citrus clementina]
Length = 597
Score = 230 bits (586), Expect = 7e-58
Identities = 126/309 (40%), Positives = 187/309 (60%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
+ + L NE R+KIR+VDP +DM + DDY+HL HG +D +E + + +RTL++
Sbjct: 271 EDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQ 330
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NRHAAVVLEG+ + +TR +AEAL R+++ N DN ++E D +
Sbjct: 331 DLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRGNEGA-----DNNANEERLDRTPRV 385
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAY 390
++IEDLQA P A L I+D R+YF SQQA+ + A D + K + E YGS+
Sbjct: 386 AEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQASMKCS-LSRQEAYGSVRD 444
Query: 389 ALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLRE 210
A+ I++ GL DPI+N E A+K + L+ ISS KYH GK ++ V LP ++KL
Sbjct: 445 AISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLY 504
Query: 209 QWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLI 30
W +IQE+L FW+ + + ++ +K+ RLKDA++ Y L+ K S + RH++SLL+
Sbjct: 505 HWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLV 564
Query: 29 HPMLQALDA 3
PM QALDA
Sbjct: 565 RPMQQALDA 573
>gb|ESW16172.1| hypothetical protein PHAVU_007G134900g [Phaseolus vulgaris]
Length = 588
Score = 228 bits (582), Expect = 2e-57
Identities = 128/312 (41%), Positives = 190/312 (60%), Gaps = 3/312 (0%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
D E L EAR+K+R+VDP +DM + DDY+HL HG +D +E + + KRTL++
Sbjct: 263 DDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKEISEAQNSLYKRTLLQ 322
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NR AVVLEG+ L D + N RTVAE L R +Q++ EV + DE ++ +M
Sbjct: 323 DLNRQGAVVLEGKTL-DMEMENPRTVAEILARRKQESDEV-------VGDEERRNRISKM 374
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGS 399
+ IEDLQ+ YA LCI+D R YF QQA+ + D + G + +E YGS
Sbjct: 375 TPIEDLQSQDDHRYAPLCIKDPRDYFDFQQANAVKTLDDSQP-GMEQMMCSLGSEEAYGS 433
Query: 398 LAYALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDK 219
L ++ I+ +GL+DP+ + E A+K + L++ ISS+KYH GK +Q+ V LP ++K
Sbjct: 434 LRASISKIQTTGLRDPLFSPEVALKVLHGLTKNISSSKYHLGKTSQESVLDILPNTTKEK 493
Query: 218 LREQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEIS 39
L + W QE+L +W+ V + + NK RRLKD+++Q Y L+ K S + + RH++S
Sbjct: 494 LLDHWVCSQELLRHYWSSYPVTTQNLVNKTRRLKDSISQIYSKLEEIKVSAQSDLRHQVS 553
Query: 38 LLIHPMLQALDA 3
L++HPM QALDA
Sbjct: 554 LVVHPMQQALDA 565
>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355480688|gb|AES61891.1| General transcription factor
IIH subunit [Medicago truncatula]
Length = 586
Score = 228 bits (582), Expect = 2e-57
Identities = 129/312 (41%), Positives = 189/312 (60%), Gaps = 3/312 (0%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
D E L NEAR+K+R+VDP +DM + DDY+HL HG +D +E + +RTL++
Sbjct: 263 DDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQ 322
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NR + VVLEG+ L D D + RT EAL R + ++ D + +ER ++ +M
Sbjct: 323 DLNRQSEVVLEGKTL-DIDMEHPRTAVEALARRKHES--------DGVVEER-RNRISKM 372
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGS 399
++IEDLQA P+A LCI+D R YF SQQA+ + D GK + + +E YGS
Sbjct: 373 AQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDS-LSGKEKIRCNLGSEEAYGS 431
Query: 398 LAYALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDK 219
L ++ I+ GL+DP+L+ E A K + L++ ISSTK + GK +Q+ V LP ++K
Sbjct: 432 LRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQESVLDILPNTTKEK 491
Query: 218 LREQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEIS 39
L + W QE+L FW+ V + +K RRLKDA++Q Y L+ K S K + RH++S
Sbjct: 492 LLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKLEEIKVSAKSDLRHQVS 551
Query: 38 LLIHPMLQALDA 3
L++HPM QALDA
Sbjct: 552 LVVHPMQQALDA 563
>gb|ABE86684.1| general transcription factor IIH component, related [Medicago
truncatula]
Length = 370
Score = 228 bits (582), Expect = 2e-57
Identities = 129/312 (41%), Positives = 189/312 (60%), Gaps = 3/312 (0%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
D E L NEAR+K+R+VDP +DM + DDY+HL HG +D +E + +RTL++
Sbjct: 47 DDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQ 106
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NR + VVLEG+ L D D + RT EAL R + ++ D + +ER ++ +M
Sbjct: 107 DLNRQSEVVLEGKTL-DIDMEHPRTAVEALARRKHES--------DGVVEER-RNRISKM 156
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGS 399
++IEDLQA P+A LCI+D R YF SQQA+ + D GK + + +E YGS
Sbjct: 157 AQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDS-LSGKEKIRCNLGSEEAYGS 215
Query: 398 LAYALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDK 219
L ++ I+ GL+DP+L+ E A K + L++ ISSTK + GK +Q+ V LP ++K
Sbjct: 216 LRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQESVLDILPNTTKEK 275
Query: 218 LREQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEIS 39
L + W QE+L FW+ V + +K RRLKDA++Q Y L+ K S K + RH++S
Sbjct: 276 LLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKLEEIKVSAKSDLRHQVS 335
Query: 38 LLIHPMLQALDA 3
L++HPM QALDA
Sbjct: 336 LVVHPMQQALDA 347
>ref|XP_006589332.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-3-like isoform X1 [Glycine max]
gi|571483735|ref|XP_006589333.1| PREDICTED: probable RNA
polymerase II transcription factor B subunit 1-3-like
isoform X2 [Glycine max]
Length = 587
Score = 228 bits (580), Expect = 4e-57
Identities = 126/312 (40%), Positives = 189/312 (60%), Gaps = 3/312 (0%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
D E L EAR+K+R+VDP +DM + DDY+HL HG +D ++ + + KRTL++
Sbjct: 263 DDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKDISEAQNSLYKRTLLQ 322
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NR AVVLEG+ L D + + RTVAE L R +Q+ D + DE ++ +M
Sbjct: 323 DLNRQGAVVLEGKTL-DMEMEHPRTVAEILARRKQE--------CDGVVDEERRNRISKM 373
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGS 399
+ IEDLQA PYA LCI+D R YF SQQA+ + D + G + +E Y S
Sbjct: 374 TPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQ-AGMEQMKCSLGSEEAYDS 432
Query: 398 LAYALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDK 219
L ++ I+ +GL+DP+ + + A+K N L++ I+STKYH GK +Q+ V LP ++K
Sbjct: 433 LRASISKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGKSSQESVLDILPNSTKEK 492
Query: 218 LREQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEIS 39
L + W QE+L FW+ V++ + +K RRLKD+++Q Y L+ K S + + RH +S
Sbjct: 493 LLDHWVCSQELLRHFWSSYPVSTQNLVSKTRRLKDSISQIYSKLEDIKVSAESDLRHHVS 552
Query: 38 LLIHPMLQALDA 3
L++HPM QAL+A
Sbjct: 553 LVVHPMQQALNA 564
>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Citrus sinensis]
Length = 597
Score = 227 bits (579), Expect = 5e-57
Identities = 125/309 (40%), Positives = 186/309 (60%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
+ + L NE R+KIR+VDP +DM + DDY+HL HG +D +E + + +RTL++
Sbjct: 271 EDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQ 330
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NRHAAVVLEG+ + +TR +AEAL R+++ N DN ++E D +
Sbjct: 331 DLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRGNEGA-----DNNANEERLDRTPRV 385
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAY 390
++IEDLQA P A L I+D R+YF SQQA+ + A D + K + E Y S+
Sbjct: 386 AEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDAQASMKCS-LSKQEAYRSVRD 444
Query: 389 ALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLRE 210
A+ I++ GL DPI+N E A+K + L+ ISS KYH GK ++ V LP ++KL
Sbjct: 445 AISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLY 504
Query: 209 QWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLI 30
W +IQE+L FW+ + + ++ +K+ RLKDA++ Y L+ K S + RH++SLL+
Sbjct: 505 HWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLV 564
Query: 29 HPMLQALDA 3
PM QALDA
Sbjct: 565 RPMQQALDA 573
>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
[Oryza sativa Japonica Group]
gi|215686948|dbj|BAG90767.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 604
Score = 226 bits (576), Expect = 1e-56
Identities = 124/308 (40%), Positives = 193/308 (62%), Gaps = 3/308 (0%)
Frame = -1
Query: 917 LVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 738
L EAR KI++VDP +DM + DDY HL HG +D +E ID D ++RTL +D+NR
Sbjct: 280 LAKEARLKIKRVDPTLDMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNR 339
Query: 737 HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 558
HAAVVLEG++ SD + +T+TVAEA+ R++++ +++ D+ + ER M++IE
Sbjct: 340 HAAVVLEGRS-SDVELTDTKTVAEAIARSKKEPP--SSSISDDTNHERLVK-VARMTEIE 395
Query: 557 DLQATQTDPYASLCIRDHRKYFSSQQASPMHA---QSDRRYLGKAEHFNPDEIYGSLAYA 387
DLQA ++ PYA LCI+D R+YF SQQA+ + + +D R+ + D+ + L
Sbjct: 396 DLQAPRSLPYAPLCIKDPREYFDSQQANALRSLGGNNDGRHARNCR-LSTDDAFDHLLGQ 454
Query: 386 LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQ 207
+ I+ +GL P++ ++ A+K N L++ IS ++ N K Q + +P++ RD+L +
Sbjct: 455 ISSIKVNGLNYPVIQSDVALKVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDH 514
Query: 206 WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 27
W IQE+L FW+ + ++ + NK++R+KDAM Q Y LQ K S + + RHEIS L+
Sbjct: 515 WAAIQELLQHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVK 574
Query: 26 PMLQALDA 3
PM QALDA
Sbjct: 575 PMTQALDA 582
>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Brachypodium distachyon]
Length = 602
Score = 223 bits (569), Expect = 7e-56
Identities = 125/312 (40%), Positives = 188/312 (60%), Gaps = 1/312 (0%)
Frame = -1
Query: 935 FLDGESLV-NEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRT 759
FL + +V EA+ KI++VDP +DM + DDY HL HG +D RE D D+ ++RT
Sbjct: 273 FLRNDDIVAKEAKLKIKRVDPTLDMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRT 332
Query: 758 LVRDINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGF 579
L +D+NRHAAVVLEG+ +D + + +TVAEAL R++ + ++ D+ S ER
Sbjct: 333 LSQDLNRHAAVVLEGRK-TDVEIADAKTVAEALARSKTETP--CSSIADDASHERLLK-V 388
Query: 578 HEMSKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGS 399
M++IEDLQA ++ PYA LCI+D R+YF SQQA+P+ ++ + D+ +
Sbjct: 389 ARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQANPLRPLGGDGRKARSCSLSTDDAFRH 448
Query: 398 LAYALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDK 219
L + ++ + L P++ + A+K N L++ IS ++ N K Q + LP + RD+
Sbjct: 449 LMDQISSVKVNKLSCPVVQSNVALKVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDE 508
Query: 218 LREQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEIS 39
L + W IQE+L FW+ + +T + NKI+R+KDAM Q Y LQ K S + + RHEIS
Sbjct: 509 LMDHWTAIQELLRHFWSSYPITTTVLYNKIQRVKDAMTQIYQKLQDIKESAQPDVRHEIS 568
Query: 38 LLIHPMLQALDA 3
L+ PM QALDA
Sbjct: 569 QLVKPMTQALDA 580
>ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Oryza brachyantha]
Length = 621
Score = 223 bits (568), Expect = 9e-56
Identities = 125/308 (40%), Positives = 189/308 (61%), Gaps = 3/308 (0%)
Frame = -1
Query: 917 LVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 738
L EAR KI++VDP +DM + DDY HL HG +D +E I+ D ++RTL +D+NR
Sbjct: 297 LAKEARLKIKRVDPTLDMEADAGDDYIHLPDHGIIRDGSKETIENDGELARRTLSQDLNR 356
Query: 737 HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 558
HAAVVLEG++ SD + +T+TVAEAL R++++ + + D+ S ER M++IE
Sbjct: 357 HAAVVLEGRS-SDVELTDTKTVAEALARSKREPPPSSIS--DDTSHERLVK-VARMTEIE 412
Query: 557 DLQATQTDPYASLCIRDHRKYFSSQQASPMHA---QSDRRYLGKAEHFNPDEIYGSLAYA 387
DLQA ++ PYA LCI+D R+YF SQQA+ + + +D R+ + + + L
Sbjct: 413 DLQAPRSVPYAPLCIKDPREYFDSQQANALRSLGGNNDGRHARNCR-LSAHDAFDHLLGQ 471
Query: 386 LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQ 207
+ I+ +GL P++ ++ A K N L+ IS T+ N K Q + +P+ RD+L +
Sbjct: 472 ISSIKVNGLNYPVVQSDVAFKVLNELNDGISRTRRLNLKNPQDSLLGQIPRHTRDELMDH 531
Query: 206 WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 27
W IQE+L FW+ + ++ + NK++R+KDAM Q Y LQ+ K S + + RHEIS L+
Sbjct: 532 WTAIQELLRHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQNIKESAQPDVRHEISQLVK 591
Query: 26 PMLQALDA 3
PM QALDA
Sbjct: 592 PMTQALDA 599
>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Solanum lycopersicum]
Length = 599
Score = 221 bits (562), Expect = 4e-55
Identities = 133/310 (42%), Positives = 185/310 (59%), Gaps = 3/310 (0%)
Frame = -1
Query: 923 ESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDI 744
+ LV+EARRKIR+VDP +DM + DDY HL HG Q +E ++ KR+ + +
Sbjct: 270 DMLVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYL 329
Query: 743 NRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVD-NLSDERCKDGFHEMS 567
N+HAAVVL+G+ + D + G+TR+VAEA RT Q AE A D N ER K ++
Sbjct: 330 NQHAAVVLQGRVI-DVELGDTRSVAEAFTRTNQ--AEQATEVSDENAYRERVKK-VSRVA 385
Query: 566 KIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHF--NPDEIYGSLA 393
+IEDLQ + P A L I+D R YF SQQA+ + A D + F + +E + SL
Sbjct: 386 EIEDLQGPRDPPVALLSIKDPRDYFDSQQANAIKALGDAETGIRQLKFRVSKEEAFCSLK 445
Query: 392 YALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLR 213
++ I GL +PI++ E A+K N LSQ ISSTKYH GK + V LP +++L
Sbjct: 446 DSISEINSQGLIEPIISPEVALKVFNLLSQNISSTKYHLGKNPHESVLDQLPSATKNELL 505
Query: 212 EQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLL 33
W +IQE+L FW+ + + + K+ RLKDAM+Q Y LQ K S + + RH++SLL
Sbjct: 506 LHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLL 565
Query: 32 IHPMLQALDA 3
+ PMLQALDA
Sbjct: 566 VQPMLQALDA 575
>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Solanum tuberosum]
Length = 599
Score = 219 bits (559), Expect = 1e-54
Identities = 133/310 (42%), Positives = 184/310 (59%), Gaps = 3/310 (0%)
Frame = -1
Query: 923 ESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDI 744
+ LV+EARRKIR+VDP +DM + DDY HL HG Q +E ++ KR+ + +
Sbjct: 270 DMLVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYL 329
Query: 743 NRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVD-NLSDERCKDGFHEMS 567
N+HAAVVL G+ + D + G+TR+VAEA RT Q AE A D N ER K ++
Sbjct: 330 NQHAAVVLRGRVI-DVELGDTRSVAEAFTRTYQ--AEQATEVSDENAYRERVKK-VSRVA 385
Query: 566 KIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFN--PDEIYGSLA 393
+IEDLQ Q P A L I+D R YF SQQA+ + A D + F+ +E + SL
Sbjct: 386 EIEDLQGPQDPPVALLSIKDPRDYFDSQQANAIKALGDAETGIRQLKFSVSKEEAFCSLK 445
Query: 392 YALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLR 213
++ I GL +PI++ E A+K N LSQ ISSTKY+ GK + V LP +++L
Sbjct: 446 DSISEINSQGLIEPIISPEVALKVFNGLSQNISSTKYYLGKNPHESVLDQLPSATKNELL 505
Query: 212 EQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLL 33
W +IQE+L FW+ + + + K+ RLKDAM+Q Y LQ K S + + RH++SLL
Sbjct: 506 LHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLL 565
Query: 32 IHPMLQALDA 3
+ PMLQALDA
Sbjct: 566 VQPMLQALDA 575
>ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Glycine max]
Length = 587
Score = 219 bits (559), Expect = 1e-54
Identities = 122/312 (39%), Positives = 185/312 (59%), Gaps = 3/312 (0%)
Frame = -1
Query: 929 DGESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVR 750
D E L EAR+K+R+VDP +DM + DDY+HL HG +D ++ + + KRTL++
Sbjct: 263 DDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKDISEAQNSLYKRTLLQ 322
Query: 749 DINRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEM 570
D+NR AVVLEG+ L D + + RTVAE L R +Q+ D + DE ++ +M
Sbjct: 323 DLNRQGAVVLEGKTL-DMEMEHPRTVAEILARRKQE--------CDGVVDEERQNRISKM 373
Query: 569 SKIEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAE---HFNPDEIYGS 399
+ I+DLQA PYA LCI+D R YF QQA+ + D + G + +E YGS
Sbjct: 374 TLIDDLQAQDNHPYAPLCIKDPRDYFDFQQANAVKTLDDSQ-TGMEQMKCSLGSEEAYGS 432
Query: 398 LAYALLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDK 219
L ++ I+ +GL+DP+ + + A+K N L++ ISS KYH G+ +Q V LP ++
Sbjct: 433 LRASISKIKTTGLRDPLFSPDVALKVLNGLTKNISSPKYHLGRSSQGSVLDILPNTTKET 492
Query: 218 LREQWKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEIS 39
L + W QE+L FW+ + + + NK RRLK++++Q Y L+ K S + + RH +S
Sbjct: 493 LLDHWVCSQELLRHFWSSYPITTQNLVNKTRRLKESISQIYSKLEDIKVSAESDLRHHVS 552
Query: 38 LLIHPMLQALDA 3
L++HPM QAL+A
Sbjct: 553 LVVHPMQQALNA 564
>ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like isoform X1 [Setaria italica]
Length = 600
Score = 219 bits (557), Expect = 2e-54
Identities = 126/308 (40%), Positives = 190/308 (61%), Gaps = 3/308 (0%)
Frame = -1
Query: 917 LVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDINR 738
LV EA+ KI++VDP +DM + DDY HL HG +D +E +D D+ ++RTL +++NR
Sbjct: 276 LVKEAKLKIKQVDPTLDMEADAGDDYIHLPDHGILRDGSKETVDNDSEFARRTLSQELNR 335
Query: 737 HAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSKIE 558
HAAVVLEG A SD + + ++VAEAL R++++ +A VD+ S ER M++IE
Sbjct: 336 HAAVVLEGIA-SDVELTDAKSVAEALARSKKEPPSTSA--VDDTSHERLLK-VARMTEIE 391
Query: 557 DLQATQTDPYASLCIRDHRKYFSSQQASPMH---AQSDRRYLGKAEHFNPDEIYGSLAYA 387
DLQA ++ PYA LCI+D R+YF SQQA+ + A +D R + +E + L
Sbjct: 392 DLQAPRSLPYAPLCIKDPREYFDSQQANALRSLGASNDGRKSRNCS-LSIEEAFHHLTDQ 450
Query: 386 LLGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQ 207
+ I+ + ++ ++ AVK N L++ IS ++ N K Q+ + +P+ RD+L +
Sbjct: 451 ISSIKVNKSNCTVIQSDMAVKVLNELNEGISRSRRLNLKNPQEGLLGRVPQHTRDELMDH 510
Query: 206 WKTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIH 27
W IQE+L FW+ + ST + NK++R+KDAM Q Y LQ+ K S + + RHEIS L+
Sbjct: 511 WTAIQELLRHFWSSYPITSTVLYNKVQRVKDAMTQIYQKLQAIKESAQPDVRHEISRLVK 570
Query: 26 PMLQALDA 3
PM QALDA
Sbjct: 571 PMTQALDA 578
>ref|NP_175971.3| probable RNA polymerase II transcription factor B subunit 1-1
[Arabidopsis thaliana]
gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
Full=Probable RNA polymerase II transcription factor B
subunit 1-1; AltName: Full=General transcription and DNA
repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
hypothetical protein [Arabidopsis thaliana]
gi|332195172|gb|AEE33293.1| probable RNA polymerase II
transcription factor B subunit 1-1 [Arabidopsis thaliana]
Length = 591
Score = 218 bits (555), Expect = 3e-54
Identities = 118/307 (38%), Positives = 186/307 (60%)
Frame = -1
Query: 923 ESLVNEARRKIRKVDPAVDMAHNYADDYSHLSGHGTAQDSGRERIDEDANQSKRTLVRDI 744
E L E R KIR+VDP +DM + DDY+HL HG +D + ++ +Q KR+L++D+
Sbjct: 268 EILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSLLQDL 327
Query: 743 NRHAAVVLEGQALSDCDFGNTRTVAEALERTEQDNAEVAAATVDNLSDERCKDGFHEMSK 564
NRHAAVVLEG+++ D + +TR VAEAL R +Q + T D +++ + ++
Sbjct: 328 NRHAAVVLEGRSI-DVESEDTRIVAEALTRVKQVSKADGETTKD--ANQERLERMSRVAG 384
Query: 563 IEDLQATQTDPYASLCIRDHRKYFSSQQASPMHAQSDRRYLGKAEHFNPDEIYGSLAYAL 384
+EDLQA Q P A L I+D R YF SQQ + ++ + L + H E YG L ++
Sbjct: 385 MEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNVPRGAKGLKRNVH----EAYGLLKESI 440
Query: 383 LGIRESGLKDPILNAESAVKAQNNLSQFISSTKYHNGKKAQKDVCSNLPKQERDKLREQW 204
L IR +GL DP++ E + + ++L++ I++ K NGK ++ LPK +D++ W
Sbjct: 441 LEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHW 500
Query: 203 KTIQEMLCQFWACCLVNSTFVSNKIRRLKDAMAQKYDNLQSAKASTKVEYRHEISLLIHP 24
+IQE+L FW+ + +T++ K+ +LKDAM+ Y L++ K S + + RH++SLL+ P
Sbjct: 501 TSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRP 560
Query: 23 MLQALDA 3
M QALDA
Sbjct: 561 MQQALDA 567