BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00008545
         (2872 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela...  1439   0.0  
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela...  1432   0.0  
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi...  1394   0.0  
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...  1392   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1347   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1333   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...  1328   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...  1325   0.0  
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor...  1320   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...  1320   0.0  
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...  1317   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1315   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...  1314   0.0  
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...  1293   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  1286   0.0  
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]         1281   0.0  
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s...  1276   0.0  
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...  1274   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...  1268   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...  1257   0.0  

>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
            gi|300146624|gb|EFJ13293.1| hypothetical protein
            SELMODRAFT_446351 [Selaginella moellendorffii]
          Length = 1393

 Score = 1439 bits (3724), Expect = 0.0
 Identities = 720/959 (75%), Positives = 819/959 (85%), Gaps = 5/959 (0%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            LE+G  I  CME WD LQ+QV +YINS+LPGLP +M   GKP+RGFVQRLKGKQGRFRGN
Sbjct: 310  LESGLSIAKCMEIWDFLQIQVAMYINSELPGLPPNM-QTGKPLRGFVQRLKGKQGRFRGN 368

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKRVDFTGRTVISPDPNLKV+EVAVP+LMA  LTYPEKVS +NIEKLRQRV NG +K+
Sbjct: 369  LSGKRVDFTGRTVISPDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKH 428

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN+++  DG ++ ++ G+ +R+A+ELKYG +VERHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 429  PGANFVVFPDGVKRFLKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCH 488

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RARVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMG+QNNLCTPKNG+
Sbjct: 489  RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 548

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSSFLITR+DTFYDR  F LMCSYMGD  EHIDLPTPAILKP+ELWTGKQ
Sbjct: 549  ILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQ 608

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGNGN 1788
            LF VL+RP+A+++VF+NF+V EKN+ K  ETMCP DG V+F+NSELI GQLGK TLGNG+
Sbjct: 609  LFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKNSELICGQLGKGTLGNGS 668

Query: 1787 KSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTE 1608
            K GLF+VLLRDY   AAASCMNRLAKLSARWIGNHGFSIGIDDVQPG+RLT +KE+R+ E
Sbjct: 669  KDGLFTVLLRDYGEQAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGSRLTVEKEKRIAE 728

Query: 1607 GYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLI 1428
            GY  CDKHI L+NKG+L LQPGC+AAQTLE+EITGELNKIRE AG VC+ ELHWRNSPLI
Sbjct: 729  GYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQVCVNELHWRNSPLI 788

Query: 1427 MSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFY 1248
            MSQCGSKGS INISQMIACVGQQSV G RAPNGFI+RSLPHFPRNDK P AKGFVANSFY
Sbjct: 789  MSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVANSFY 848

Query: 1247 TGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAIVQ 1068
            +GLTATEF FHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLS  YDGTVR+++  IVQ
Sbjct: 849  SGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSGVIVQ 908

Query: 1067 FLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKYDM 888
             +YGDD+MDPV MEG++G PLNLDR+LMK KATCP   +PAL  SEL K V+ + S    
Sbjct: 909  LIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGTTPALPPSELWKIVESKFS---- 964

Query: 887  QPEAGCSAAFRNSLFNFLEKYISNVKKT--RLTLGLSEEKNNDPDLAGLENIALDICGFT 714
            Q  + CS AF +SL  FL K    +  T  RL+L L +  N D      EN+A ++ G T
Sbjct: 965  QDGSECSTAFLDSLRKFLRKEFDTISSTRKRLSLPLDDFGNVDD-----ENVAANVSGLT 1019

Query: 713  ARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 534
            +RQLEVFL TCI RYH K+++ G AVGAIGAQSIGEPGTQMTLKTFHFAGVASMN+TLGV
Sbjct: 1020 SRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1079

Query: 533  PRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQAF 354
            PRIKEIINA+K ISTPIITAKL+S+NDVKAARIVKGRIEKT LG+VAKSIK VL+P QAF
Sbjct: 1080 PRIKEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQAF 1139

Query: 353  ISVKLDMRIIESLQLEITAYTVAESILKTPK---LKIKQQNLRVLDHEKLHIFPPEADRL 183
            +S+KLDM  I SLQL+I A TVAE++LK PK   +K+K+Q+++V D   + +  PE+DR 
Sbjct: 1140 VSIKLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESDRK 1199

Query: 182  KIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAVMGTQGVDGINT 6
            K+ FALHSL+N LPKVIVKGI TVERAVINQ+KGKYNLLVEGTNL AVMGT+GVDG  T
Sbjct: 1200 KMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGKYNLLVEGTNLKAVMGTEGVDGRET 1258


>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
            gi|300158014|gb|EFJ24638.1| hypothetical protein
            SELMODRAFT_442419 [Selaginella moellendorffii]
          Length = 1348

 Score = 1432 bits (3706), Expect = 0.0
 Identities = 718/961 (74%), Positives = 816/961 (84%), Gaps = 7/961 (0%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            LE+G  I  CME WD LQ+QV +YINS+LPGLP +M   GKP+RGFVQRLKGKQGRFRGN
Sbjct: 310  LESGLSIAKCMEIWDFLQIQVAMYINSELPGLPPNM-QTGKPLRGFVQRLKGKQGRFRGN 368

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKRVDFTGRTVISPDPNLKV+EVAVP+LMA  LTYPEKVS +NIEKLRQRV NG +K+
Sbjct: 369  LSGKRVDFTGRTVISPDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKH 428

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN+++  DG ++ ++ G+ +R+A+ELKYG +VERHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 429  PGANFVVFPDGVKRFLKFGDRKRIASELKYGDVVERHLEDGDIVLFNRQPSLHRMSIMCH 488

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RARVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LMG+QNNLCTPKNG+
Sbjct: 489  RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 548

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSSFLITR+DTFYDR  F LMCSYMGD  EHIDLPTPAILKP+ELWTGKQ
Sbjct: 549  ILVASTQDFLTSSFLITRRDTFYDRGQFALMCSYMGDAVEHIDLPTPAILKPVELWTGKQ 608

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGNGN 1788
            LF VL+RP+A+++VF+NF+V EKN+ K  ETMCP DG V+F+NSELI GQLGK TLGNG+
Sbjct: 609  LFGVLIRPSARIKVFLNFVVCEKNHKKGTETMCPKDGYVFFKNSELICGQLGKGTLGNGS 668

Query: 1787 KSGLFSVLLRDYNAYAAASCMNRLAKLS----ARWIGNHGFSIGIDDVQPGARLTAKKEE 1620
            K GLF+VLLRDY   AAASCMNRLAKL     ARWIGNHGFSIGIDDVQPG+RLT +KE+
Sbjct: 669  KDGLFTVLLRDYGEQAAASCMNRLAKLRHSYFARWIGNHGFSIGIDDVQPGSRLTVEKEK 728

Query: 1619 RVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRN 1440
            R+ EGY  CDKHI L+NKG+L LQPGC+AAQTLE+EITGELNKIRE AG VC+ ELHWRN
Sbjct: 729  RIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIREAAGQVCVNELHWRN 788

Query: 1439 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVA 1260
            SPLIMSQCGSKGS INISQMIACVGQQSV G RAPNGFI+RSLPHFPRNDK P AKGFVA
Sbjct: 789  SPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHFPRNDKTPQAKGFVA 848

Query: 1259 NSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANS 1080
            NSFY+GLTATEF FHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLS  YDGTVR+++ 
Sbjct: 849  NSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSCQYDGTVRNSSG 908

Query: 1079 AIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLS 900
             IVQ +YGDD+MDPV MEG++G PLNLDR+LMK KATCP   +PAL  SEL K V+ + S
Sbjct: 909  VIVQLIYGDDSMDPVSMEGQNGTPLNLDRVLMKAKATCPRGATPALPPSELWKIVESKFS 968

Query: 899  KYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDICG 720
                Q  + CS AF +SL  FL K    +  TR  L L  E   + D    EN+A ++ G
Sbjct: 969  ----QDGSECSMAFLDSLRKFLRKEFDTISSTRKRLSLPLEDFGNLD---DENVAANVSG 1021

Query: 719  FTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 540
             T+RQLEVFL TCI RYH K+++ G AVGAIGAQSIGEPGTQMTLKTFHFAGVASMN+TL
Sbjct: 1022 LTSRQLEVFLNTCIGRYHRKKLDPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITL 1081

Query: 539  GVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQ 360
            GVPRIKEIINA+K ISTPIITAKL+S+NDVKAARIVKGRIEKT LG+VAKSIK VL+P Q
Sbjct: 1082 GVPRIKEIINASKKISTPIITAKLVSENDVKAARIVKGRIEKTALGDVAKSIKIVLRPGQ 1141

Query: 359  AFISVKLDMRIIESLQLEITAYTVAESILKTPK---LKIKQQNLRVLDHEKLHIFPPEAD 189
            AF+S+KLDM  I SLQL+I A TVAE++LK PK   +K+K+Q+++V D   + +  PE+D
Sbjct: 1142 AFVSIKLDMDRIYSLQLDIRAETVAEAVLKFPKIKSMKLKEQHVKVNDDRSISLTTPESD 1201

Query: 188  RLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAVMGTQGVDGIN 9
            R K+ FALHSL+N LPKVIVKGI TVERAVINQ+KGKYNLLVEGTNL AVMGT+GVDG  
Sbjct: 1202 RKKMLFALHSLQNMLPKVIVKGIPTVERAVINQEKGKYNLLVEGTNLKAVMGTEGVDGRE 1261

Query: 8    T 6
            T
Sbjct: 1262 T 1262


>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
            predicted protein [Physcomitrella patens]
          Length = 1397

 Score = 1394 bits (3609), Expect = 0.0
 Identities = 707/962 (73%), Positives = 797/962 (82%), Gaps = 7/962 (0%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            +E G      ME W+LLQ QV   INS+ P   S     GK  RGFVQRLKGKQGRFRGN
Sbjct: 304  VEQGLAAEKTMETWELLQSQVSQLINSETPVPRSEQPTSGKQPRGFVQRLKGKQGRFRGN 363

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKRVDFTGRTVISPDPNLK+TEVAVP+LMA +LTYPEKVSRYNI+KLR R+ NG  K+
Sbjct: 364  LSGKRVDFTGRTVISPDPNLKITEVAVPLLMAQLLTYPEKVSRYNIDKLRGRIINGMTKH 423

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN+II  DG++  ++ G+ RR AAELKYG IVERHLEDGDIVLFNRQPSLHRMSIMSH
Sbjct: 424  PGANFIIFPDGNKLYLKFGDRRRYAAELKYGDIVERHLEDGDIVLFNRQPSLHRMSIMSH 483

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+ NNLCTPKNG+
Sbjct: 484  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVANNLCTPKNGE 543

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSS+L TRKDTFYDR  F   C YMGD +E+IDLPTP+I+KP+ELWTGKQ
Sbjct: 544  ILVASTQDFLTSSYLFTRKDTFYDRATFTQACVYMGDAAENIDLPTPSIIKPMELWTGKQ 603

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGE--TMCPNDGCVYFRNSELISGQLGKATLGN 1794
            LFSVLVRPNAK RVFVN +  EKNY K     +MCP DG VYFRNSELI GQLGKATLGN
Sbjct: 604  LFSVLVRPNAKTRVFVNLVSYEKNYDKKANKGSMCPTDGYVYFRNSELICGQLGKATLGN 663

Query: 1793 GNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERV 1614
            GNK GLF+VLLRDY   AAA CMNRLAKLSARWIGNHGFSIGIDDV P  RL  +KE+++
Sbjct: 664  GNKDGLFTVLLRDYGNEAAAVCMNRLAKLSARWIGNHGFSIGIDDVAPSDRLNREKEKQI 723

Query: 1613 TEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSP 1434
            T+GYN CD+HI LY KGKL LQPGCNAAQTLE+ +TGELNKIRE AG+VC  ELHWRNSP
Sbjct: 724  TKGYNACDQHIQLYKKGKLELQPGCNAAQTLESAVTGELNKIREAAGNVCKDELHWRNSP 783

Query: 1433 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANS 1254
            LIMS+CGSKGS INISQM+ACVGQQSVGG+RAPNGFIDR+LPHFPR+D+ P  KGFVANS
Sbjct: 784  LIMSECGSKGSFINISQMVACVGQQSVGGKRAPNGFIDRTLPHFPRHDRTPQGKGFVANS 843

Query: 1253 FYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAI 1074
            FY+GL+ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLS  YDGTVR+++  I
Sbjct: 844  FYSGLSATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSAQYDGTVRNSSGGI 903

Query: 1073 VQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKY 894
            VQ LYGDD MDPV+MEGKDG P NLDR+LMKTKATCP+ G   L  +E+ K  +ERL+K 
Sbjct: 904  VQLLYGDDGMDPVYMEGKDGAPFNLDRMLMKTKATCPSYGQLGLPPTEIEKLFNERLTKP 963

Query: 893  DMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDICGFT 714
            DM  E     AF+ SL  F++  I +   TR  LGL  + N  PD   LE+ A  I G T
Sbjct: 964  DMTSET--VGAFKTSLKKFMDSCIKDNISTRTKLGLPLDCNGGPDQTLLESTATYISGLT 1021

Query: 713  ARQLE-----VFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMN 549
            +RQLE     VFL+TCIKRYH KR+E GAAVGA+GAQSIGEPGTQMTLKTFHFAGVASMN
Sbjct: 1022 SRQLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAGVASMN 1081

Query: 548  VTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLK 369
            +TLGVPRIKEIINA+KNISTPIITA L+S ND KAARIVKGRIEKT LGEVAKSIKTVL+
Sbjct: 1082 ITLGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSIKTVLR 1141

Query: 368  PLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEAD 189
              QA ISVKLDM+ I++LQL+I + TVA +I++TPK+K+K  N+R++D +KL + PP+ D
Sbjct: 1142 ASQAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQD 1201

Query: 188  RLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAVMGTQGVDGIN 9
            + K+YF LHSL N LPKVIVKGI +VERAVIN++KG YNLLVEGTNL AVMG  GV+G  
Sbjct: 1202 KGKLYFYLHSLCNMLPKVIVKGIPSVERAVINKEKGVYNLLVEGTNLKAVMGISGVNGKL 1261

Query: 8    TK 3
            TK
Sbjct: 1262 TK 1263


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score = 1392 bits (3603), Expect = 0.0
 Identities = 699/948 (73%), Positives = 797/948 (84%), Gaps = 4/948 (0%)
 Frame = -3

Query: 2837 MEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGNLSGKRVDFTG 2658
            M+ W LLQV+V LYINS+LP LP +  P  K   G VQRLKGKQGRFR NL GKRVDFTG
Sbjct: 303  MDTWVLLQVRVALYINSELPSLPLNYQPS-KFEGGLVQRLKGKQGRFRSNLEGKRVDFTG 361

Query: 2657 RTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKYPGANYIISMD 2478
            RTVISPDPNLK+TEVA+P LMA +LTY E+V+ +NIEKLRQ V NGP KYPGAN++IS  
Sbjct: 362  RTVISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFVIS-G 420

Query: 2477 GSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTL 2298
            G   S+R+GN +R A ELK+G  VERHLEDG+IVLFNRQPSLHRMSIM HRARVMPWRTL
Sbjct: 421  GDTLSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTL 480

Query: 2297 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVASTQDFL 2118
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+Q+NLCTPKNG+ILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFL 540

Query: 2117 TSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFSVLVRPNA 1938
            TSS+LITRKDTFYDR  F LMCSYMGDG E+IDLPTPA+LKP+ELWTGKQLFSVL+RP+A
Sbjct: 541  TSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHA 600

Query: 1937 KMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGNGNKSGLFSVLLR 1758
             M+V+VN  +MEKNYSK GETMC NDG VY RNSELISGQLGKATLGNGNK GLFSVLLR
Sbjct: 601  HMKVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLR 660

Query: 1757 DYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTEGYNKCDKHID 1578
            DYN++AAASCMNRLAKLSARWIGNHGFSIGIDDV PG+ LT +KEE++  GY+ CD  ID
Sbjct: 661  DYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFID 720

Query: 1577 LYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLIMSQCGSKGSP 1398
             Y+KGKL+L+PGCNAAQTLEAEIT  LN IR+ A  VC+ ELHWRNSPLIMSQCGSKGSP
Sbjct: 721  AYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSP 780

Query: 1397 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFYTGLTATEFFF 1218
            INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK PAAKGFVANSFYTGLTA EFFF
Sbjct: 781  INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFF 840

Query: 1217 HTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAIVQFLYGDDAMDP 1038
            HTMGGREGLVDTAVKTA+TGY+SRRL+K+LEDLSTHYD TVR+++  I+QF YGDD MDP
Sbjct: 841  HTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDP 900

Query: 1037 VHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKYDMQPEAGCSAAF 858
              MEGK G PLNLDRL MK KATCPA+ S +LS SE+S  V++RLSK+DM PE GCS AF
Sbjct: 901  AKMEGKSGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAF 960

Query: 857  RNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDICGFTARQLEVFLETCI 678
            +  L NF++K +  +KKTR  LGL E+  +    +GLE++A +I G + +QL VFLETCI
Sbjct: 961  KEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVFLETCI 1020

Query: 677  KRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKN 498
             RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+TLGVPRIKEI+ A+K 
Sbjct: 1021 SRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEILGASKK 1080

Query: 497  ISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQAFISVKLDMRIIES 318
            ISTPIITA L+ DND K+ARIVKGRIEKT+LGEVAK++K  + P QA I++ LDM+ IE+
Sbjct: 1081 ISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQASINITLDMKRIEA 1140

Query: 317  LQLEITAYTVAESILKTPKLKIKQQNLRVLD----HEKLHIFPPEADRLKIYFALHSLRN 150
            LQ+ I A TVA+SI +  K K+ +  L+V       +KL I  PE  R ++ ++LH L++
Sbjct: 1141 LQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDKLKILLPEIGRKEVLYSLHLLQS 1200

Query: 149  KLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAVMGTQGVDGINT 6
             LPK+IVKGI TVERAVIN  KGK NLLVEGTNL AVMGT GVDG NT
Sbjct: 1201 LLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNT 1248


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 1347 bits (3486), Expect = 0.0
 Identities = 684/958 (71%), Positives = 785/958 (81%), Gaps = 3/958 (0%)
 Frame = -3

Query: 2870 ELEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRG 2691
            EL+  G  + C+  WD LQ++V  YINSD+ G+P +M    +P+ GFVQRLKGKQGRFRG
Sbjct: 295  ELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAM-QAARPLSGFVQRLKGKQGRFRG 353

Query: 2690 NLSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQK 2511
            NLSGKRV++TGRTVISPDPNLK+TEVA+P+LMA +L+YPE+VS +NIEKLRQ + NGP K
Sbjct: 354  NLSGKRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFK 413

Query: 2510 YPGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMS 2331
            YPGA  I   DGS +S+     +R A ELKYG IVERHLEDGD+VLFNRQPSLHRMSIM 
Sbjct: 414  YPGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMC 473

Query: 2330 HRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNG 2151
            HRAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPKNG
Sbjct: 474  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNG 533

Query: 2150 DILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGK 1971
            +ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYMGDG + +DLPTPAI+KP+ELWTGK
Sbjct: 534  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGK 593

Query: 1970 QLFSVLVRPNAKMRVFVNFIVMEKNYSKTG--ETMCPNDGCVYFRNSELISGQLGKATLG 1797
            QLF+VL+RP+A +RV++N  VMEK Y+K    ETMCP+DG VYFRNSELISGQLGKATLG
Sbjct: 594  QLFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLG 653

Query: 1796 NGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEER 1617
            NGNK GLFSVLLRDYNA+AAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG  L  +K +R
Sbjct: 654  NGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKR 713

Query: 1616 VTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNS 1437
            + EGY  C + I  YNKGKL LQPGCNAAQTLEAEITG LNKIRE   +VC+ ELHWRNS
Sbjct: 714  IEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNS 773

Query: 1436 PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVAN 1257
            PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPR  K P AKGFVA+
Sbjct: 774  PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVAS 833

Query: 1256 SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSA 1077
            SFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLMKALEDLS  YD TVR+AN +
Sbjct: 834  SFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGS 893

Query: 1076 IVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSK 897
            IVQFLYGDD MDP  MEGKDG PLN +RL +K KATCPA  + +LS  ++ + V +RL +
Sbjct: 894  IVQFLYGDDGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETV-KRLKE 952

Query: 896  YDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDICGF 717
            ++   E GCS AF+ +L  FLE+     K TR  LGL  E   + +L   E  A +I G 
Sbjct: 953  HNTSAE-GCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGI 1011

Query: 716  TARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 537
            T++QL+VFL+TCI RY  KR+EAG A+GAIGA SIGEPGTQMTLKTFHFAGVASMNVTLG
Sbjct: 1012 TSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1071

Query: 536  VPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQA 357
            VPRIKEIIN AK ISTPIITA L  +N+VK AR+VKGRIE+T LG+VAKSIK VL    A
Sbjct: 1072 VPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLA 1131

Query: 356  FISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADRLKI 177
             I+V LDM  I++ QL I +  V ESIL+  ++K+KQQ+++VLD  KL +  P+ DR  I
Sbjct: 1132 LIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVH-PQGDRSTI 1190

Query: 176  YFALHSLRNKLPKVIVKGISTVERAVINQD-KGKYNLLVEGTNLAAVMGTQGVDGINT 6
            +F LH+L+N LP V+VKGI TVERAVIN+D K KYNLLVEGT L  VMGT+GV G  T
Sbjct: 1191 HFELHALKNLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRET 1248


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1333 bits (3451), Expect = 0.0
 Identities = 674/977 (68%), Positives = 780/977 (79%), Gaps = 21/977 (2%)
 Frame = -3

Query: 2870 ELEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRG 2691
            EL        C+E+WD+LQ +V   INSD+ G+P SM    KP+ GFVQRLKGKQGRFRG
Sbjct: 291  ELSTSNSQAKCLESWDMLQSEVAQLINSDVRGIPFSM-QVSKPLAGFVQRLKGKQGRFRG 349

Query: 2690 NLSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQK 2511
            NL GKRV+FTGRTVISPDPNLK+TEVAVP+ MA +LTYPE+V+R+NIEKLRQ VSNGP K
Sbjct: 350  NLCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDK 409

Query: 2510 YPGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMS 2331
            YPGA  +  +DGS +S+     +RLA ELKYG IVERHLEDGD+VLFNRQPSLHRMSIM 
Sbjct: 410  YPGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMC 469

Query: 2330 HRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNG 2151
            HR RVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ LMG+QNNLCTPKNG
Sbjct: 470  HRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNG 529

Query: 2150 DILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGK 1971
            +ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYMGDG + +DLPTPA++KPIELWTGK
Sbjct: 530  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGK 589

Query: 1970 QLFSVLVRPNAKMRVFVNFIVMEKNYSKTG------ETMCPNDGCVYFRNSELISGQLGK 1809
            QLFSVLVRP+A M+V++N  V EK+YSK        ETMCPNDG VYFRNSELISGQ+GK
Sbjct: 590  QLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGK 649

Query: 1808 ATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAK 1629
            ATLGNGNK GL+SVLLRDY A+AAA CMNRLAKLSARWIGNHGFSIGIDDVQPG +L  K
Sbjct: 650  ATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKK 709

Query: 1628 KEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELH 1449
            K+  + EGY  CDK I+L+N G L  + GC+AAQ+LE++IT  LN IRE   +VC++ LH
Sbjct: 710  KQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLH 769

Query: 1448 WRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKG 1269
            WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF R  K PAAKG
Sbjct: 770  WRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKG 829

Query: 1268 FVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRS 1089
            FVANSFY+GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS HYD +VR+
Sbjct: 830  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRN 889

Query: 1088 ANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDE 909
            A   IVQF YGDD MDP  MEGK G PLN +RL +K KATCP++G+  LS SE S+ V++
Sbjct: 890  AGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVED 949

Query: 908  RLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEE--------KNNDPDLA 753
            RLSK D  PE GCS AF  SL  FL KY+   KK+  TL    E         ++D D  
Sbjct: 950  RLSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNI 1009

Query: 752  GLEN-IALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTF 576
             + N +  +I G T RQL+VFL+TC+ RYH+K++EAG A+GAIGAQSIGEPGTQMTLKTF
Sbjct: 1010 VIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTF 1069

Query: 575  HFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEV 396
            HFAGVASMNVTLGVPRIKEIIN AK ISTPI+TA L  D++V  AR+VK RIEKT LG++
Sbjct: 1070 HFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQI 1129

Query: 395  AKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEK 216
            AK I+ V+    A I +KLDM  I   +L + A  V ++IL TPKLK+K +++ VLD  K
Sbjct: 1130 AKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRK 1189

Query: 215  LHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKG------KYNLLVEGT 54
            L + P +ADR K++F LH L+N LP V+VKGI TV RAVI ++K       K++LLVEGT
Sbjct: 1190 LRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGT 1249

Query: 53   NLAAVMGTQGVDGINTK 3
             L AVMGT+GVDG NTK
Sbjct: 1250 GLQAVMGTEGVDGCNTK 1266


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 1328 bits (3437), Expect = 0.0
 Identities = 671/973 (68%), Positives = 777/973 (79%), Gaps = 18/973 (1%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            L  GG  T C + W  LQ+QV  Y+NSD P LP S        RG VQRLKGK GRFRGN
Sbjct: 291  LHTGGPFTKCFDCWQYLQLQVVEYVNSDAPCLPDSQ------HRGLVQRLKGKTGRFRGN 344

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKR ++TGRTVISPDPNLK+TEVA+P+LMA VLTYPE+VS YNIEKLRQ + NGP KY
Sbjct: 345  LSGKRTEYTGRTVISPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKY 404

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN++   DG +QS+++G+ R  A +LK G IVERHLEDGD+VLFNRQPSLHRMSIMSH
Sbjct: 405  PGANFVTQPDGMKQSLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSH 464

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSSFL+TRKDTFYDR +F L+CSY+GD  E+IDLPTPA++KPIELWTGKQ
Sbjct: 525  ILVASTQDFLTSSFLVTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQ 584

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSKTG-------------ETMCPNDGCVYFRNSELI 1827
            LFSVLVRPNA  RVF+N  V EK YSK               ETMCPNDG VYFRNSEL+
Sbjct: 585  LFSVLVRPNAHTRVFLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELL 644

Query: 1826 SGQLGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPG 1647
            SGQ+GKATLGNGNK GL+SVLLRDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG
Sbjct: 645  SGQVGKATLGNGNKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPG 704

Query: 1646 ARLTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSV 1467
              L  +K++ +  GY KC   I L+ KG L L PGCNAAQTLE  ITG LN+IR +AG+V
Sbjct: 705  EHLNRQKKKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNV 764

Query: 1466 CLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 1287
            C+  LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF++R+LPHFP N K
Sbjct: 765  CMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSK 824

Query: 1286 KPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 1107
             PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  Y
Sbjct: 825  TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFY 884

Query: 1106 DGTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSEL 927
            D TVR+A+  IVQFLYGDD MDP  MEGKDG PLNLD+L MK  ATCP  GS  LS   +
Sbjct: 885  DQTVRNASGGIVQFLYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAI 944

Query: 926  SKRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGL 747
             + ++++L ++D   + GCS  F+ +L  FL+K I  +K TR  L L E+     D    
Sbjct: 945  KQMLEDKLLQHDTSSDGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHVEKKDSCVE 1004

Query: 746  ENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFA 567
            E++A  I G +A+QL+VFL+TC+ RY SK++EAGA++GAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1005 ESVAAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFA 1064

Query: 566  GVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKS 387
            GVASMNVTLGVPRIKEIINAA+ ISTPIITA+L+S  DV +ARIVKG +EK VLGEVA +
Sbjct: 1065 GVASMNVTLGVPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVA 1124

Query: 386  IKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHI 207
            I+ VLK  Q  + VKLDM++IESL + I+A +V  SIL  PK+K+K +++RV+D  KL I
Sbjct: 1125 IQIVLKSSQPNLIVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRI 1184

Query: 206  FPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGK-----YNLLVEGTNLAA 42
            +P   D+ K+   LH+L++ LPKVIVKGI TVER VI++ K K     Y LLVEGTNL A
Sbjct: 1185 YPAGTDKRKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLA 1244

Query: 41   VMGTQGVDGINTK 3
            VMGT GVD   TK
Sbjct: 1245 VMGTPGVDATKTK 1257


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score = 1325 bits (3429), Expect = 0.0
 Identities = 665/972 (68%), Positives = 783/972 (80%), Gaps = 17/972 (1%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            L+ GGQ   C + W  LQ+QV  YINSD P LP S        RG VQRLKGK GRFRGN
Sbjct: 291  LQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLPESQ------HRGLVQRLKGKTGRFRGN 344

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKR ++TGRTVISPDPNL++TEVA+P+LMA VLTYPE+VS YNIEKLRQ + NGP K+
Sbjct: 345  LSGKRTEYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKH 404

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN+II  DG++  +++ + R  A +LKYG +VERHLEDGDIVLFNRQPSLHRMSIMSH
Sbjct: 405  PGANFIIQTDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSH 464

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSSFL+TRKD FYDR +F L+CSY+GD  E+IDLPTPA++KPIELWTGKQ
Sbjct: 525  ILVASTQDFLTSSFLVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQ 584

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGNGN 1788
            LFSVLVRPNA  +VF+N  V EK YSK+ ETMCPNDG VYFRNSEL+SGQ+GK TLGNGN
Sbjct: 585  LFSVLVRPNACTKVFLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGN 644

Query: 1787 KSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTE 1608
            K G+FS+L+RDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDV+PG  L  +K++++ E
Sbjct: 645  KDGMFSILVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDE 704

Query: 1607 GYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLI 1428
            GY +C   I  ++KG L LQPGCNAAQTLE +IT  LNKIRE AG++C+  LHWRNSPLI
Sbjct: 705  GYKECHDLITSFSKGALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLI 764

Query: 1427 MSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFY 1248
            MSQCGSKGSPINISQM+ CVGQQSVGG RAPNGFIDR+LPHFP N K PAAKGFVANSFY
Sbjct: 765  MSQCGSKGSPINISQMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFY 824

Query: 1247 TGLT-----------------ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDL 1119
             GLT                 ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDL
Sbjct: 825  NGLTATEFFFHTMGGIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDL 884

Query: 1118 STHYDGTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALS 939
            S  YD TVR+A+  IVQFLYGDD MDP  MEG+DG+PLNLD+L MK  ATCP  G   LS
Sbjct: 885  SVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNTLS 944

Query: 938  VSELSKRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPD 759
              E+ + ++++LS++D   + GCS  F+  L +FLE  I  +K TR  L L +E +   D
Sbjct: 945  PGEILQILNDKLSEHDASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALCL-DENHVGKD 1003

Query: 758  LAGLENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKT 579
             +  E+IA +I G +A+QL+VFL+TC+ RYHSK++EAGA++GAIGAQSIGEPGTQMTLKT
Sbjct: 1004 SSIEESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKT 1063

Query: 578  FHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGE 399
            FHFAGVASMNVTLGVPRIKEIINAAK ISTPIITA+L+S  DV +AR+VKG +EK VLGE
Sbjct: 1064 FHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGE 1123

Query: 398  VAKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHE 219
            VA+ IK VLK  Q  + VKLDM+ IE L + I+A +V  SIL  P++K+K +++RV+D  
Sbjct: 1124 VAEDIKIVLKSSQPNLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKA 1183

Query: 218  KLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKGKYNLLVEGTNLAAV 39
            KL ++P   D+ K+ + LH+L++ LPKVIVKGI TVERAVI+Q   KY+LLVEGTNL AV
Sbjct: 1184 KLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAV 1243

Query: 38   MGTQGVDGINTK 3
            MGT GVD + TK
Sbjct: 1244 MGTPGVDAMKTK 1255


>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
          Length = 1179

 Score = 1320 bits (3417), Expect = 0.0
 Identities = 676/983 (68%), Positives = 774/983 (78%), Gaps = 27/983 (2%)
 Frame = -3

Query: 2870 ELEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRG 2691
            +L  G      +E WD LQ  V LYINSD+ G+P    P  K   GF+QRLKGKQGRFRG
Sbjct: 64   DLSEGSAAAKFLENWDALQAHVALYINSDVRGIPPPK-PGEKQYSGFIQRLKGKQGRFRG 122

Query: 2690 NLSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQK 2511
            NLSGKRV++TGRTVISPDPNLK+TEVA+P+ MA +LTYPE+VS +NIEKLRQ VSNGP K
Sbjct: 123  NLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSHHNIEKLRQCVSNGPDK 182

Query: 2510 YPGANYIISMDGS-------------RQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLF 2370
            YPGA  +   DGS               SIR    +RLA ELKYG IVERHLEDGDIVLF
Sbjct: 183  YPGARMLRRADGSTWQGLICFYYLCGHVSIRVSR-KRLADELKYGDIVERHLEDGDIVLF 241

Query: 2369 NRQPSLHRMSIMSHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSL 2190
            NRQPSLHRMSIM HRARVMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ L
Sbjct: 242  NRQPSLHRMSIMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILL 301

Query: 2189 MGIQNNLCTPKNGDILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPT 2010
            MG+QNNLCTPKNG+ILVASTQDFLTSSFLITRKDTFYDR AF LMCSYMGD  EH DLPT
Sbjct: 302  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMEHNDLPT 361

Query: 2009 PAILKPIELWTGKQLFSVLVRPNAKMRVFVNFIVMEKNYS-------KTGETMCPNDGCV 1851
            PA++KP+ELWTGKQLFSVLVRPNA +RVF+N  V EKNYS       +  ETMCP DG V
Sbjct: 362  PAVIKPVELWTGKQLFSVLVRPNANVRVFLNLTVREKNYSNKLQENEREFETMCPADGFV 421

Query: 1850 YFRNSELISGQLGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSI 1671
             FRNSELISGQLGK TLGNGNK GL+S+LLRDY A+AAA+CMNRLAKLSARWIGNHGFSI
Sbjct: 422  CFRNSELISGQLGKGTLGNGNKDGLYSILLRDYKAHAAAACMNRLAKLSARWIGNHGFSI 481

Query: 1670 GIDDVQPGARLTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNK 1491
            GIDDVQP  +L  +K++++ EG   CD  I  Y +G L  +PGC+AAQ+LEA ITG LNK
Sbjct: 482  GIDDVQPSDKLRDEKDQKINEGAKDCDDKIKSYKEGNLPPEPGCDAAQSLEAVITGILNK 541

Query: 1490 IRELAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSL 1311
            IRE  G +C++ L WRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSL
Sbjct: 542  IREETGKLCMKALPWRNSPLIMSQCGSKGSLINISQMVACVGQQSVGGRRAPNGFIDRSL 601

Query: 1310 PHFPRNDKKPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKA 1131
            PHFPR DK PAAKGFV++SFY GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KA
Sbjct: 602  PHFPRKDKTPAAKGFVSHSFYDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 661

Query: 1130 LEDLSTHYDGTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGS 951
            LEDL  HYD TVR+A++ I+QF YGDD MDP HMEGK+G PLN +RL +K KATCPA G+
Sbjct: 662  LEDLFVHYDNTVRNASACIIQFCYGDDGMDPAHMEGKNGAPLNFERLFLKAKATCPAGGT 721

Query: 950  PALSVSELSKRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKN 771
              LS  ++S+ V+ RLSK DM PE GCSAAF+NSL +FL+ Y+   K+T      +E   
Sbjct: 722  EKLSPEKVSELVESRLSKKDMTPEGGCSAAFKNSLKSFLDNYVKAFKRTWDPCESTEGHA 781

Query: 770  NDPDLAGLENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQM 591
               + A  +NI L + G TARQLEVFL+TCI RYHSK++EAG A+GAIGAQSIGEPGTQM
Sbjct: 782  KMENSATTKNIVLQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQM 841

Query: 590  TLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKT 411
            TLKTFHFAGVASMNVTLGVPRIKEIIN AK ISTPIITA L  DN+V  ARIV+GRIEK 
Sbjct: 842  TLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITAILECDNNVNFARIVRGRIEKI 901

Query: 410  VLGEVAKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRV 231
             LG+VAKSIKTV+    A + + LDM  I+   L I A  V +SIL+TP++K+K++++RV
Sbjct: 902  SLGQVAKSIKTVMTSRVASVVITLDMERIQDALLSIDANVVRDSILQTPRIKLKKEHIRV 961

Query: 230  LDHEKLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDKG-------KYN 72
            LD +KL I P E++R K+Y  L  L   L  ++VKGI TVERAVI+ +K        KY 
Sbjct: 962  LDFKKLEILPYESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSEKDKKTDISKKYK 1021

Query: 71   LLVEGTNLAAVMGTQGVDGINTK 3
            LLVEGT L  VMGT+GVDG NTK
Sbjct: 1022 LLVEGTGLLGVMGTEGVDGRNTK 1044


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1320 bits (3416), Expect = 0.0
 Identities = 666/965 (69%), Positives = 775/965 (80%), Gaps = 10/965 (1%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            L+ GGQ   C + W  LQ+QV  YINSD P LP S        RG VQRLKGK GRFRGN
Sbjct: 291  LQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLPESQ------HRGLVQRLKGKTGRFRGN 344

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKR ++TGRTVISPDPNL++TEVA+P+LMA VLTYPE+VS YNIEKLRQ + NGP K+
Sbjct: 345  LSGKRTEYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKH 404

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN+II  DG++  +++ + R  A +LKYG +VERHLEDGDIVLFNRQPSLHRMSIMSH
Sbjct: 405  PGANFIIQPDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSH 464

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSSFL+TRKD FYDR +F L+CSY+GD  E+IDLPTPA++KPIELWTGKQ
Sbjct: 525  ILVASTQDFLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQ 584

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSKTG------ETMCPNDGCVYFRNSELISGQLGKA 1806
            LFSVLVRPNA  +VF+N  V EK Y          E MCPNDG VYFRNSEL+SGQ+GKA
Sbjct: 585  LFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKA 644

Query: 1805 TLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKK 1626
            TLGNGNK G+FS L+RDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG  L  +K
Sbjct: 645  TLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEK 704

Query: 1625 EERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHW 1446
            + ++  GY  C   I  Y+KG L LQPGCNAAQTLE  IT  LN+IRE AG VC+  LHW
Sbjct: 705  KMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHW 764

Query: 1445 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGF 1266
            RNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDR+LPHFP N K PAAKGF
Sbjct: 765  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGF 824

Query: 1265 VANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSA 1086
            VANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  YD TVR+A
Sbjct: 825  VANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNA 884

Query: 1085 NSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDER 906
            +  IVQFLYGDD MDP  MEGKDG+PLNLD+L MK  ATCP  G   LS  E+ + ++++
Sbjct: 885  SGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDK 944

Query: 905  LSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDI 726
            LS++D   + GCS  F+  L  FLE  I  +K TR  L L E+   +   +  E+IA +I
Sbjct: 945  LSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANI 1004

Query: 725  CGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNV 546
             G + +QL+VFL+TC+ RYH K++EAGA++GAIGAQSIGEPGTQMTLKTFHFAGVASMNV
Sbjct: 1005 SGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNV 1064

Query: 545  TLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKP 366
            TLGVPRIKEIINAAK ISTPIITA+L+S+ DV +ARIVKG +EK VLGEVA++IK VLK 
Sbjct: 1065 TLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKS 1124

Query: 365  LQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADR 186
             Q  + VKLDM+ IE+L + I+A +V  SIL  PK+K+K +++RV+D  KL I+P   D+
Sbjct: 1125 SQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDK 1184

Query: 185  LKIYFALHSLRNKLPKVIVKGISTVERAVIN----QDKGKYNLLVEGTNLAAVMGTQGVD 18
             K+ + LH L++ LPKVIVKGI TVERAVI+    ++  +Y LLVEGTNL AVMGT GVD
Sbjct: 1185 SKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVD 1244

Query: 17   GINTK 3
             + TK
Sbjct: 1245 AMKTK 1249


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
            italica]
          Length = 1397

 Score = 1317 bits (3409), Expect = 0.0
 Identities = 666/976 (68%), Positives = 779/976 (79%), Gaps = 21/976 (2%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            L+ GG  + C + W  LQ+QV  ++NSD P LP S        RG VQRLKGK GRFRGN
Sbjct: 294  LQTGGLFSKCFDCWQQLQLQVVEFVNSDAPCLPESQ------HRGLVQRLKGKTGRFRGN 347

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKR ++TGRTVISPDPNL++TEVA+P+LMA VLTYPE+VS YN+EKLRQ + NGP K+
Sbjct: 348  LSGKRTEYTGRTVISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKH 407

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN+II+ DG++ S+++G+ R  A +LK G  VERHLEDGD+VLFNRQPSLHRMSIMSH
Sbjct: 408  PGANFIITPDGTKLSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSH 467

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 468  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 527

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSSFL+TRKD FYDR +F L+CSY+GD  E+IDLPTPA++KPIELWTGKQ
Sbjct: 528  ILVASTQDFLTSSFLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQ 587

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSKTGE----------------TMCPNDGCVYFRNS 1836
            LFSVLVRPNA+ +VF+N  V EK YSK  E                TMCPNDG VYFRNS
Sbjct: 588  LFSVLVRPNARTKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNS 647

Query: 1835 ELISGQLGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDV 1656
            EL+SGQ+GKATLGNGNK G++SVLLRDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDV
Sbjct: 648  ELLSGQVGKATLGNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDV 707

Query: 1655 QPGARLTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELA 1476
            QPG  L  +K++++ EGY +C   I L+ KG L L PGCNAAQTLE +ITG LN+IR  A
Sbjct: 708  QPGEHLNRQKKKKIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAA 767

Query: 1475 GSVCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPR 1296
            G+VC+  LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDR+LPHFP 
Sbjct: 768  GNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPI 827

Query: 1295 NDKKPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLS 1116
            N K PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS
Sbjct: 828  NSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLS 887

Query: 1115 THYDGTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSV 936
              YD TVR+A+  IVQFLYGDD MDP  MEGKDG PLNLD+L MK  ATCP  G   LS 
Sbjct: 888  VFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSP 947

Query: 935  SELSKRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDL 756
             ++ + ++++L+++    + GCS  F+  L  FLE+ I  +K TR  L L E+     D 
Sbjct: 948  DDIKQMLEDKLTQHKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGKNDS 1007

Query: 755  AGLENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTF 576
               E IA +I G +A+QL+VFL+TC  RY+SK +EAGA++GAIGAQSIGEPGTQMTLKTF
Sbjct: 1008 CIEEIIAANISGISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTF 1067

Query: 575  HFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEV 396
            HFAGVASMNVTLGVPRIKEIINAAK ISTPIIT +L+S  DV +ARIVKG +EK VLGEV
Sbjct: 1068 HFAGVASMNVTLGVPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEV 1127

Query: 395  AKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEK 216
            A +IK VLK  Q  + VKLDM++IE+L + I+A +V  SIL  PK+K+K +++RV+D  K
Sbjct: 1128 ASAIKIVLKSSQPNLVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAK 1187

Query: 215  LHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDK-----GKYNLLVEGTN 51
            L I+P   D+ K+   LH+L+  LPKVIVKGI TVER VI++ K      KYNLLVEGTN
Sbjct: 1188 LRIYPAGTDKSKLQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTN 1247

Query: 50   LAAVMGTQGVDGINTK 3
            L AVMGT GVD  NTK
Sbjct: 1248 LLAVMGTPGVDARNTK 1263


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1315 bits (3402), Expect = 0.0
 Identities = 661/956 (69%), Positives = 782/956 (81%), Gaps = 11/956 (1%)
 Frame = -3

Query: 2837 MEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGNLSGKRVDFTG 2658
            +  W  LQ++V  YINSD+ G+P  M  + +P+ GF QRLKGKQGRFRGNLSGKRV++TG
Sbjct: 303  LNLWIDLQMEVAQYINSDVRGVPLHMQAQ-RPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 2657 RTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKYPGANYIISMD 2478
            RTVISPDPNLK+TEVA+P+LMA +LTYPE+VS++NIEKLRQ V NGP KYPGA +I   D
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 2477 GSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTL 2298
            GS  S+   + +R A ELK+G IV+RHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTL
Sbjct: 422  GSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 2297 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVASTQDFL 2118
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPK+G+ILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 2117 TSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFSVLVRPNA 1938
            TSSFLITRKDTFY+R +F L+CSYMGD  +  DLP+PA +KP+ELWTGKQLF +L+RP +
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYS 601

Query: 1937 KMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGNGNKSGLFSVLLR 1758
            KMRV+VN  V EK+YS  GETMCP+DG VYFRNSELISGQLGKATLGNGNK GL+SVLLR
Sbjct: 602  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 1757 DYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTEGYNKCDKHID 1578
            DY ++AAA+CMNRLAKLSARWIGNHGFSIGIDDV PG  L  +K+  +   Y KC+  I 
Sbjct: 662  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 1577 LYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLIMSQCGSKGSP 1398
             +N+GKL +QPGC+AAQTLEAE+T  LNK+R+  G +C++ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 1397 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFYTGLTATEFFF 1218
            INISQMIACVGQQSVGGRRAP+GFIDRSLPHFP   K PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 1217 HTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAIVQFLYGDDAMDP 1038
            HTMGGREGLVDTAVKTA+TGYMSRRLMKALEDL+ +YD TVR+A++ IVQF+YGDD MDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 1037 VHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKYDMQPEAGCSAAF 858
              ME K G PLN  RL MK KATCP  G  +LS SE+ + V+ERLS +DM PE GCS AF
Sbjct: 902  SQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 857  RNSLFNFLEKYIS-NVKKTRLTLGLSEEKNNDPDLAGLENIALDICGFTARQLEVFLETC 681
            R+SL +FL K ++  +K  R +L L EE+    D   LE IAL+I G T RQL+VFL TC
Sbjct: 962  RSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDRGYLEKIALNISGITKRQLQVFLNTC 1021

Query: 680  IKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 501
            I RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK
Sbjct: 1022 ISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1081

Query: 500  NISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQAFISVKLDMRIIE 321
             I+TPIIT KL+S  ++ AAR++K RIEKT+LG+VAKS+K VL    A I++ LDM  I+
Sbjct: 1082 KITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETIQ 1141

Query: 320  SLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADRLKIYFALHSLRNKLP 141
              QL I AYTV +SIL+T K+K+K+  ++VL+  KL +F P+A++ K++F LH L+NKLP
Sbjct: 1142 VSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFELHRLKNKLP 1200

Query: 140  KVIVKGISTVERAVINQDKGK----------YNLLVEGTNLAAVMGTQGVDGINTK 3
             V+VKGI+TV+RAV+N+++ K          Y LLVEGT L AVMG +GVDG  TK
Sbjct: 1201 AVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTK 1256


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score = 1314 bits (3400), Expect = 0.0
 Identities = 659/956 (68%), Positives = 780/956 (81%), Gaps = 11/956 (1%)
 Frame = -3

Query: 2837 MEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGNLSGKRVDFTG 2658
            +  W  LQ++V  YINSD+ G+P  M P  +P+ GF QRLKGKQGRFRGNLSGKRV++TG
Sbjct: 303  LNQWIDLQMEVAQYINSDVRGVPLQMQPP-RPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 2657 RTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKYPGANYIISMD 2478
            RTVISPDPNLK+TEVA+P+LMA +LTYPE+VS++NIEKLRQ V NGP KYPGA +I   D
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 2477 GSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTL 2298
            G+  S+   + +R A ELK+G IV+RHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTL
Sbjct: 422  GNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 2297 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVASTQDFL 2118
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPK+G+ILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 2117 TSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFSVLVRPNA 1938
            TSSFLITRKDTFY+R +F L+CSYMGD  +  DLP+PA +KP+ELWTGKQLF VL+RP +
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLRPYS 601

Query: 1937 KMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGNGNKSGLFSVLLR 1758
            KMRV+VN  + EK+YS  GETMC +DG VYFRNSELISGQLGKATLGNGNK GL+SVLLR
Sbjct: 602  KMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 1757 DYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTEGYNKCDKHID 1578
            DY ++AAA+CMNRLAKLSARWIGNHGFSIGIDDV PG  L  +K+  +   Y KC+  I 
Sbjct: 662  DYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 1577 LYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLIMSQCGSKGSP 1398
             +N+GKL +QPGC+AAQTLEAE+T  LNK+R+  G +C++ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 1397 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFYTGLTATEFFF 1218
            INISQMIACVGQQSVGGRRAP+GFIDRSLPHFP   K PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 1217 HTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAIVQFLYGDDAMDP 1038
            HTMGGREGLVDTAVKTA+TGYMSRRLMKALEDL+ +YD TVR+A++ IVQF+YGDD MDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 1037 VHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKYDMQPEAGCSAAF 858
              ME K G PLN  RL MK KATCP  G  +LS SE+ + V+ERLS +DM PE GCS AF
Sbjct: 902  SRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 857  RNSLFNFLEKYIS-NVKKTRLTLGLSEEKNNDPDLAGLENIALDICGFTARQLEVFLETC 681
            R SL +FL K ++  +K  R +L L EE+    D   LE I L+I G T +QL+VFL TC
Sbjct: 962  RASLSDFLIKSLAETLKNLRESLLLGEEQYEGDDRGYLEKIVLNISGITKKQLQVFLNTC 1021

Query: 680  IKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 501
            I RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK
Sbjct: 1022 ISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1081

Query: 500  NISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQAFISVKLDMRIIE 321
             I+TPIITAKL+S  ++ AAR++K RIEKT+LG+VAKS+K VL    A I++ LDM  I+
Sbjct: 1082 KITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETIQ 1141

Query: 320  SLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADRLKIYFALHSLRNKLP 141
              QL I AYTV +SIL+T K+K+K+  ++VL+  KL +F P+A++ K++F LH L+NKLP
Sbjct: 1142 VSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFELHRLKNKLP 1200

Query: 140  KVIVKGISTVERAVINQDKGK----------YNLLVEGTNLAAVMGTQGVDGINTK 3
             V+VKGI+TV+RAV+N+++ K          Y LLVEGT L AVMG +GVDG  TK
Sbjct: 1201 AVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGRYTK 1256


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score = 1293 bits (3347), Expect = 0.0
 Identities = 649/938 (69%), Positives = 769/938 (81%), Gaps = 11/938 (1%)
 Frame = -3

Query: 2837 MEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGNLSGKRVDFTG 2658
            +  W  LQ++V  YINSD+ G+P  M  + +P+ GF QRLKGKQGRFRGNLSGKRV++TG
Sbjct: 303  LNLWIDLQMEVAQYINSDVRGVPLHMQAQ-RPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 2657 RTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKYPGANYIISMD 2478
            RTVISPDPNLK+TEVA+P+LMA +LTYPE+VS++NIEKLRQ V NGP KYPGA +I   D
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 2477 GSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTL 2298
            GS  S+   + +R A ELK+G IV+RHLEDGDIVLFNRQPSLHRMSIMSHRAR+MPWRTL
Sbjct: 422  GSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 2297 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVASTQDFL 2118
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPK+G+ILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 2117 TSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFSVLVRPNA 1938
            TSSFLITRKDTFY+R +F L+CSYMGD  +  DLP+PA +KP+ELWTGKQLF +L+RP +
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYS 601

Query: 1937 KMRVFVNFIVMEKNYSKTGETMCPNDGCVYFRNSELISGQLGKATLGNGNKSGLFSVLLR 1758
            KMRV+VN  V EK+YS  GETMCP+DG VYFRNSELISGQLGKATLGNGNK GL+SVLLR
Sbjct: 602  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 1757 DYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTEGYNKCDKHID 1578
            DY ++AAA+CMNRLAKLSARWIGNHGFSIGIDDV PG  L  +K+  +   Y KC+  I 
Sbjct: 662  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 1577 LYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLIMSQCGSKGSP 1398
             +N+GKL +QPGC+AAQTLEAE+T  LNK+R+  G +C++ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 1397 INISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFYTGLTATEFFF 1218
            INISQMIACVGQQSVGGRRAP+GFIDRSLPHFP   K PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 1217 HTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAIVQFLYGDDAMDP 1038
            HTMGGREGLVDTAVKTA+TGYMSRRLMKALEDL+ +YD TVR+A++ IVQF+YGDD MDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 1037 VHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKYDMQPEAGCSAAF 858
              ME K G PLN  RL MK KATCP  G  +LS SE+ + V+ERLS +DM PE GCS AF
Sbjct: 902  SQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 857  RNSLFNFLEKYIS-NVKKTRLTLGLSEEKNNDPDLAGLENIALDICGFTARQLEVFLETC 681
            R+SL +FL K ++  +K  R +L L EE+    D   LE IAL+I G T RQL+VFL TC
Sbjct: 962  RSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDDRGYLEKIALNISGITKRQLQVFLNTC 1021

Query: 680  IKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 501
            I RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK
Sbjct: 1022 ISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1081

Query: 500  NISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQAFISVKLDMRIIE 321
             I+TPIIT KL+S  ++ AAR++K RIEKT+LG+VAKS+K VL    A I++ LDM  I+
Sbjct: 1082 KITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAISLDMETIQ 1141

Query: 320  SLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADRLKIYFALHSLRNKLP 141
              QL I AYTV +SIL+T K+K+K+  ++VL+  KL +F P+A++ K++F LH L+NKLP
Sbjct: 1142 VSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKLHFELHRLKNKLP 1200

Query: 140  KVIVKGISTVERAVINQDKGK----------YNLLVEG 57
             V+VKGI+TV+RAV+N+++ K          Y LLVEG
Sbjct: 1201 AVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEG 1238


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 1286 bits (3327), Expect = 0.0
 Identities = 664/979 (67%), Positives = 760/979 (77%), Gaps = 23/979 (2%)
 Frame = -3

Query: 2870 ELEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRG 2691
            EL         +  W+ LQV+V  YINSD+ G+P SM    +P+ GFVQRLKGKQGRFRG
Sbjct: 299  ELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSM-QVARPLSGFVQRLKGKQGRFRG 357

Query: 2690 NLSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQK 2511
            NLSGKRV++TGRTVISPDPNLK+TEVA+P+ MA +LTYPE+VS +NIEKLRQ + NGP K
Sbjct: 358  NLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDK 417

Query: 2510 YPGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMS 2331
            YPGA  I   DG+ + +      +LA ELK G IV+RHLEDGD+VLFNRQPSLHRMSIM 
Sbjct: 418  YPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMC 477

Query: 2330 HRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNG 2151
            HRAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPKNG
Sbjct: 478  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNG 537

Query: 2150 DILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGK 1971
            +ILVASTQDFLTSSFLITRKDTFYDR AF LMC YMGDG + +DLPTPAILKP+ELWTGK
Sbjct: 538  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGK 597

Query: 1970 QLFSVLVRPNAKMRVFVNFIVMEKNYSKTG-----------ETMCPNDGCVYFRNSELIS 1824
            QLFSVL+RP+A MRV+VN  V EK YS              ETMCPNDG VYFRNSELIS
Sbjct: 598  QLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELIS 657

Query: 1823 GQLGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGA 1644
            GQLGKATLGNGNK GL+SVLLRDY A+A + CMNRLAKLSARWIGNHGFSIGIDDVQP  
Sbjct: 658  GQLGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKK 717

Query: 1643 RLTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVC 1464
             L+ KK + ++E Y  C+  I  YN+GKL L+PGC+AAQTLEA IT  LN+IRE AG  C
Sbjct: 718  ELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKAC 777

Query: 1463 LRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKK 1284
            +  L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPR  K+
Sbjct: 778  MGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKE 837

Query: 1283 PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYD 1104
            PAAKGFVANSFY+GL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KALEDLS  YD
Sbjct: 838  PAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYD 897

Query: 1103 GTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELS 924
             +VR+A   IVQFLYGDD MDP +MEGK GEPLN DRLLMK KATCP  G   LS  ++S
Sbjct: 898  NSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVS 957

Query: 923  KRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLE 744
            + V+++L+ Y  +    CS AF NSL  F E     + K    +   E+   D     LE
Sbjct: 958  EIVEKQLAAYGKE---SCSEAFLNSLRKFFEGQQDKLDK---KIKFVEDIGWDDKSQILE 1011

Query: 743  NIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAG 564
             +     G T +QLEVF++TC  RYH KR+EAG A+GAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1012 EVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1071

Query: 563  VASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSI 384
            VASMN+T GVPRIKEIIN AK ISTPIITA+L  +++  AAR+VKGRIEKT+LG+VAKSI
Sbjct: 1072 VASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSI 1131

Query: 383  KTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIF 204
            K V+    A I + LDM  I+   L I A  V ESI++TPK+K+KQQ+++VLD  KL IF
Sbjct: 1132 KIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIF 1191

Query: 203  PPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVI------------NQDKGKYNLLVE 60
            PP  D+ KI+F L+SL+N LP VIVKGI TVER VI            N +K KY LLVE
Sbjct: 1192 PP-VDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVE 1250

Query: 59   GTNLAAVMGTQGVDGINTK 3
            GT L AVMG +G+DG  TK
Sbjct: 1251 GTGLQAVMGAEGIDGCKTK 1269


>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
          Length = 1395

 Score = 1281 bits (3316), Expect = 0.0
 Identities = 658/969 (67%), Positives = 762/969 (78%), Gaps = 24/969 (2%)
 Frame = -3

Query: 2840 CMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGNLSGKRVDFT 2661
            C+  W++LQV+V  YINSD+ G+P SM    KP+ GFVQR+KGK GRFRGNLSGKRV++T
Sbjct: 302  CLGGWEMLQVEVAQYINSDVRGVPFSM-QVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYT 360

Query: 2660 GRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKYPGANYIISM 2481
            GRTVISPDPNLK+TEVA+P+ MA +LTYPE+VS +NIEKLRQ V NGP KYPGA  +   
Sbjct: 361  GRTVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYP 420

Query: 2480 DGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRT 2301
            DGS + +     +RLA ELK+G +V+RHLEDGDIVLFNRQPSLHRMSIM HRAR+MPWRT
Sbjct: 421  DGSARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRT 480

Query: 2300 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVASTQDF 2121
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+QNNLCTPKNG+ILVASTQDF
Sbjct: 481  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 540

Query: 2120 LTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFSVLVRPN 1941
            LTSSFLITRKD FYDR AF L+CSYMGDG + IDLPTPA+LKPIELWTGKQLFSVL+RP+
Sbjct: 541  LTSSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPH 600

Query: 1940 AKMRVFVNFIVMEKNYSKT-----------GETMCPNDGCVYFRNSELISGQLGKATLGN 1794
            A +RV++N IV E+NYSK             ETMCP+DG VY RNSELI GQLGKATLGN
Sbjct: 601  ASVRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGN 660

Query: 1793 GNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERV 1614
            GNK GL+SVLLRDYNA+AAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG RL  +K   +
Sbjct: 661  GNKDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTI 720

Query: 1613 TEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSP 1434
            +  Y KCD+ I  +N+GKL  +PG +AAQTLEA +T  LN IR+  G VC++ELHWRNSP
Sbjct: 721  SGDYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSP 780

Query: 1433 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANS 1254
            LIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFIDRSLPHF R  K PAAKGFVANS
Sbjct: 781  LIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANS 840

Query: 1253 FYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAI 1074
            FY+GLTATEFFFHTM GREGLVDTAVKTAETGYMSRRL+KALEDLS HYD TVR+A+  I
Sbjct: 841  FYSGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCI 900

Query: 1073 VQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKY 894
            VQF+YGDD MDP  MEGK G PLN DRLLMK KATCP      L V  + + ++E+L+K+
Sbjct: 901  VQFIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKH 960

Query: 893  DMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDICGFT 714
            D  P   CS AF+ SL  FL+   + + +    +    +K+       LE +   I G +
Sbjct: 961  D--PAGVCSEAFKKSLKGFLKSQTNELDRVMKLVNNCAQKSEI-----LEKVGHKISGIS 1013

Query: 713  ARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 534
             RQLEVF+ TCI RY SK +EAG A+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T GV
Sbjct: 1014 DRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV 1073

Query: 533  PRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQAF 354
            PRIKEIINAAK ISTP+ITA+L  D++   A+IVKGRIEKTVLG+VAKSIK V+    A 
Sbjct: 1074 PRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSAS 1133

Query: 353  ISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADRLKIY 174
            + + LDM II   +L I A  V ESIL+TPK+K+K+Q+++VLD  KL + PP ADR +I+
Sbjct: 1134 VVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPP-ADRSQIH 1192

Query: 173  FALHSLRNKLPKVIVKGISTVERAVINQDKGK-------------YNLLVEGTNLAAVMG 33
            F LHSL+N LP V+VKGI TVER V+  DK K             + LLVEGT L AVMG
Sbjct: 1193 FELHSLKNLLPLVVVKGIKTVERTVV-YDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMG 1251

Query: 32   TQGVDGINT 6
             +G+DG  T
Sbjct: 1252 IEGIDGRRT 1260


>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Fragaria vesca subsp. vesca]
          Length = 1390

 Score = 1276 bits (3302), Expect = 0.0
 Identities = 638/973 (65%), Positives = 759/973 (78%), Gaps = 23/973 (2%)
 Frame = -3

Query: 2855 GQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGNLSGK 2676
            G  T  +  W++LQ +V LYINSD+ G+P  M    KP+ G VQRLKGK GRFRGNL GK
Sbjct: 295  GSTTRFLSNWEILQAEVALYINSDVRGVPYHMTANAKPLNGLVQRLKGKTGRFRGNLCGK 354

Query: 2675 RVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKYPGAN 2496
            RV++TGRTVISPDPNLK+TEV +P+ MA +L+YPE+VS +NIEKLR+ V+NGP KYPGA 
Sbjct: 355  RVEYTGRTVISPDPNLKITEVGIPIQMAQILSYPERVSDHNIEKLRRCVANGPFKYPGAL 414

Query: 2495 YIISMDGSRQSIRHGNPRRLAAE-LKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSHRAR 2319
             +   +G   S++ G  R   A+ LK G IV+RHLEDGDIVLFNRQPSLHRMSIM HRAR
Sbjct: 415  VLKCQNGEEWSLKAGQKRMSHADNLKPGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR 474

Query: 2318 VMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILV 2139
            +MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA+ LMG+QNNLCTPKNG+ILV
Sbjct: 475  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILV 534

Query: 2138 ASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFS 1959
            ASTQDFLTSSFLITRKDTFYDR +F LMCSYMGDG+EH+DLPTPA++KPIELWTGKQL+S
Sbjct: 535  ASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTEHVDLPTPAVVKPIELWTGKQLYS 594

Query: 1958 VLVRPNAKMRVFVNFIVMEKNYSKTG-------ETMCPNDGCVYFRNSELISGQLGKATL 1800
            VLVRPN+ +RV++N  V EK+YS          E MCPNDG VYFRNSEL+SGQLGK TL
Sbjct: 595  VLVRPNSNVRVYLNLTVREKSYSNRKTEDGREIEAMCPNDGFVYFRNSELLSGQLGKGTL 654

Query: 1799 GNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEE 1620
            GNGNK GLFSVLLRDY A+AAASCMNR+AKLSARWIGNHGFSIGI DVQP   L  +KE+
Sbjct: 655  GNGNKDGLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHGFSIGISDVQPSDILYGEKEK 714

Query: 1619 RVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRN 1440
             + +GY+KCD  I LY +G+L L PGC+AAQ+LE+ IT  LN IR+  G +C++ LHWRN
Sbjct: 715  IIKKGYDKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAVLNDIRDQTGKLCMQTLHWRN 774

Query: 1439 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVA 1260
            SPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAPNGFIDRSLPHFPR    PAAKGFVA
Sbjct: 775  SPLIMSQCGSKGSAINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKVNTPAAKGFVA 834

Query: 1259 NSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANS 1080
            +SFY+GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL K LEDLS  YD TVR+AN 
Sbjct: 835  SSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKVLEDLSVQYDKTVRAANG 894

Query: 1079 AIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLS 900
             IVQF YGDD MDP  MEGK G PL+  RL  + KATCPA  S +LS  E+S+ V  RLS
Sbjct: 895  GIVQFCYGDDGMDPAMMEGKSGAPLDFYRLFFRAKATCPAGESESLSPDEVSEIVRSRLS 954

Query: 899  KYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGLENIALDICG 720
            + DM P+ GCS  F++S+  FL++Y+  ++KT+    L++    +   A L+NI  +I G
Sbjct: 955  EQDMTPDGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWEVKSATLQNIVQNISG 1014

Query: 719  FTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 540
             T RQL+VFL+TCI RYHSK+++AG A+G IGAQSIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1015 VTPRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1074

Query: 539  GVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQ 360
            GVPRIKEIIN AKNI TPIIT  L  DN+   AR+V GRIEKT LG+VA+ I+ V+ P  
Sbjct: 1075 GVPRIKEIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAECIEIVMSPRA 1134

Query: 359  AFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADRLK 180
            A++ VKLDM +I+   L I A  V +SIL TP++K+K +++RV D++ + +   E DR K
Sbjct: 1135 AYVEVKLDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEVHSHEKDRRK 1194

Query: 179  IYFALHSLRNKLPKVIVKGISTVERAVINQ---------------DKGKYNLLVEGTNLA 45
            ++F L+ L++ LP VIV+GI T+ER VI++               D+ KY L  EG  L 
Sbjct: 1195 LHFHLYYLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYKLFAEGKGLL 1254

Query: 44   AVMGTQGVDGINT 6
            AVM T+GVDG  T
Sbjct: 1255 AVMSTKGVDGCKT 1267


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score = 1275 bits (3298), Expect = 0.0
 Identities = 653/975 (66%), Positives = 765/975 (78%), Gaps = 20/975 (2%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            L+ G  +  C + W LLQ+QV  YINSD P L     P+    RG VQRLKGK GRFRGN
Sbjct: 291  LQNGDPLMKCFDCWQLLQLQVVEYINSDAPSLTD---PQN---RGLVQRLKGKTGRFRGN 344

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKR ++TGRTVISPDPNL++TEVA+P+LMA VLTYPE+VS YNIEKLRQ + NGP K+
Sbjct: 345  LSGKRTEYTGRTVISPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKH 404

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGAN++   DG++  +++ + R  A +LKYG IVERHLEDGDIVLFNRQPSLHRMSIMSH
Sbjct: 405  PGANFVTQPDGTKLHLKYCDRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSH 464

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGD 2148
            RAR+MPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAL LMG+QNNLCTPKNG+
Sbjct: 465  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGE 524

Query: 2147 ILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQ 1968
            ILVASTQDFLTSSFLITRKD FYDR  F L+CSY+GD  E+IDLPTPAI+KP+ELWTGKQ
Sbjct: 525  ILVASTQDFLTSSFLITRKDNFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQ 584

Query: 1967 LFSVLVRPNAKMRVFVNFIVMEKNYSK-----------TGETMCPNDGCVYFRNSELISG 1821
            LFSVLVRPNA  +V++N  V EK Y K             ETMCPNDG VYFRNSEL+SG
Sbjct: 585  LFSVLVRPNACTKVYLNLTVEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSG 644

Query: 1820 QLGKATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGAR 1641
            Q+GK TLGNGNK G+FSVL+RDYN++AAASCMNRLAK SAR+IGNHGFSIG+DDVQPG  
Sbjct: 645  QVGKKTLGNGNKDGMFSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGES 704

Query: 1640 LTAKKEERVTEGYNKCDKHIDLYNKGK--LNLQPGCNAAQTLEAEITGELNKIRELAGSV 1467
            L  KK++ + +GY +C   I +Y+KG     L PGCN AQTLE  ++  LN++RE AG  
Sbjct: 705  LNQKKKKTIDQGYTECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEH 764

Query: 1466 CLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDK 1287
            C+  LHWRNSPLIMSQCGSKGSPINISQM+ CVGQQSVGGRRAP+GFIDR+LPHFP + K
Sbjct: 765  CMNTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSK 824

Query: 1286 KPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHY 1107
             PAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS  Y
Sbjct: 825  TPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFY 884

Query: 1106 DGTVRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSEL 927
            D TVR+A+S IVQF+YGDD MDPV MEGK G PLNLD+L MK KATCP  G   LS   +
Sbjct: 885  DQTVRNASSGIVQFVYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAI 944

Query: 926  SKRVDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKKTRLTLGLSEEKNNDPDLAGL 747
             + ++++LS+ DM    GCS  F+  L  F E  I  ++ TR TL L E+     D +  
Sbjct: 945  MQMLNDKLSEQDMS-SGGCSDKFKELLTKFFEDRIKMLRSTRRTLHLDEDHVGMKDSSIE 1003

Query: 746  ENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFA 567
            E IA +I G +A+QL+VFL+TC+ RYHSK +EAGA++GAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1004 ERIAANISGISAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFA 1063

Query: 566  GVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKS 387
            GVASMNVTLGVPRIKEIINAAKNISTPIITA+L+S  D+  A  VK  +EK VLGEVA  
Sbjct: 1064 GVASMNVTLGVPRIKEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAV 1123

Query: 386  IKTVLKPLQAFISVKLDMRIIESL-QLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLH 210
            IK VLK  Q  + VKLDM+ IE+   + I++ +V +SI++ PK+K+K +++RV+D  KL 
Sbjct: 1124 IKIVLKSSQPNLVVKLDMQRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLR 1183

Query: 209  IFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDK------GKYNLLVEGTNL 48
            I+P   D+ K+   LH+L++ LPKVIVKGI TVERAV+N  K       +YNLLVEGTNL
Sbjct: 1184 IYPTGTDKSKLQLELHTLKSMLPKVIVKGIPTVERAVVNPVKRPDKTLDRYNLLVEGTNL 1243

Query: 47   AAVMGTQGVDGINTK 3
              V+GT GVD   TK
Sbjct: 1244 LKVLGTPGVDAKKTK 1258


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score = 1268 bits (3281), Expect = 0.0
 Identities = 656/982 (66%), Positives = 772/982 (78%), Gaps = 28/982 (2%)
 Frame = -3

Query: 2867 LEAGGQITHCMEAWDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGN 2688
            LE    +   +++WD LQ  V LY+NSD+  +P+++   GKP+ GFVQRLKGKQGRFRGN
Sbjct: 270  LEGRMSVNKYLDSWDGLQAAVALYMNSDVR-VPNNV-EVGKPLSGFVQRLKGKQGRFRGN 327

Query: 2687 LSGKRVDFTGRTVISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKY 2508
            LSGKRV+FTGRTVISPDPNLK+TEVA+P+ MA +L+YPE+VS +NIEKLRQ VSNGPQKY
Sbjct: 328  LSGKRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKY 387

Query: 2507 PGANYIISMDGSRQSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSH 2328
            PGA+ +   DGS + +     + +A EL +G IV+RHLEDGD+VLFNRQPSLHRMSIM H
Sbjct: 388  PGASTVRYPDGSSKRLIGSYRKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 447

Query: 2327 RARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGI-QNNLCTPKNG 2151
            RAR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAL LMG+ QNNLCTPKNG
Sbjct: 448  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNNLCTPKNG 507

Query: 2150 DILVASTQDFLTSSFLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGK 1971
            +ILVASTQDFLTSSFLITR+DTFYDR AF LMCSYM DG + IDLPTPAILKPIELWTGK
Sbjct: 508  EILVASTQDFLTSSFLITRRDTFYDRAAFSLMCSYMNDGMDLIDLPTPAILKPIELWTGK 567

Query: 1970 QLFSVLVRPNAKMRVFVNFIVMEKNYSKTG-------ETMCPNDGCVYFRNSELISGQLG 1812
            QLFSVL+RPNA +RV+VN IV EK YSK         ETMCPNDG VY RNSELISGQLG
Sbjct: 568  QLFSVLLRPNANVRVYVNLIVREKIYSKPKKGDKREKETMCPNDGFVYIRNSELISGQLG 627

Query: 1811 KATLGNGNKSGLFSVLLRDYNAYAAASCMNRLAKLS--ARWIGNHGFSIGIDDVQPGARL 1638
            KATLGNGNK GL+S+LLRDYN +AAA+CMNRLAKL   ARWIGNHGFSIGIDDVQPG +L
Sbjct: 628  KATLGNGNKDGLYSILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGIDDVQPGKKL 687

Query: 1637 TAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLR 1458
               K + ++ GY +CDK I+ YN+GKL L+PGC+A QTLE+EIT +LNK+RE AG VC++
Sbjct: 688  IDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLREEAGDVCMK 747

Query: 1457 ELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPA 1278
            ELHWRNSPLIMSQCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDRSLPHFPR  K PA
Sbjct: 748  ELHWRNSPLIMSQCGSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRKSKTPA 807

Query: 1277 AKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGT 1098
            AKGFVANSFY+GL ATEFFFHTM GREGLVDTAVKTA+TGYMSRRL+K LEDLS  YD T
Sbjct: 808  AKGFVANSFYSGLMATEFFFHTMAGREGLVDTAVKTADTGYMSRRLIKGLEDLSIQYDNT 867

Query: 1097 VRSANSAIVQFLYGDDAMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKR 918
            VR+A+  IVQFLYGDD +DP  MEGK G PLNLDRL  K KATCP      LS  ++S  
Sbjct: 868  VRNASGCIVQFLYGDDGLDPASMEGKGGVPLNLDRLFSKVKATCPVREEDYLSPLDISDV 927

Query: 917  VDERLSKYDMQPEAGCSAAFRNSLFNFLEKYISNVKK-TRLTLGLSEEKNNDPDLAG--- 750
            V+  L K+DM     CS AF+ SL +FL  +   ++   +L  G+ +  + +    G   
Sbjct: 928  VENLLLKHDMALGGICSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQTGGIRG 987

Query: 749  ----LENIALDICGFTARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLK 582
                +E +A  I G + RQ+EVF++TCI RY  KR+E G A+GAIGAQSIGEPGTQMTLK
Sbjct: 988  NSKIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLK 1047

Query: 581  TFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLG 402
            TFHFAGVASMN+T GVPRIKEIIN AK ISTPIITA+L  + +V AARI KGRI+KTVLG
Sbjct: 1048 TFHFAGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLG 1107

Query: 401  EVAKSIKTVLKPLQAFISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDH 222
            +VAKSIK V+    A + + LDM+ I++ QL + A  V E+IL+TP++K+K Q+++VLD 
Sbjct: 1108 QVAKSIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVLDT 1167

Query: 221  EKLHIFPPEADRLKIYFALHSLRNKLPKVIVKGISTVERAVINQDK--GK--------YN 72
             KL +  P  DR +++F LH+L+N LP +IV+GI TVERAVI Q K  GK        YN
Sbjct: 1168 RKLEVI-PLGDRERVHFELHNLKNLLPSIIVQGIKTVERAVIAQKKHDGKANDQELPTYN 1226

Query: 71   LLVEGTNLAAVMGTQGVDGINT 6
            +LVEG  L  VMGT+GVDG  T
Sbjct: 1227 MLVEGMGLDLVMGTEGVDGCKT 1248


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score = 1257 bits (3253), Expect = 0.0
 Identities = 653/968 (67%), Positives = 750/968 (77%), Gaps = 26/968 (2%)
 Frame = -3

Query: 2828 WDLLQVQVGLYINSDLPGLPSSMLPEGKPMRGFVQRLKGKQGRFRGNLSGKRVDFTGRTV 2649
            WD LQ  V LYINSD+  +P  M   G+P+ GFVQRL GKQGRFR NL+GKRV+FTGRTV
Sbjct: 312  WDELQAVVTLYINSDVR-IPLDM-QVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGRTV 369

Query: 2648 ISPDPNLKVTEVAVPMLMAMVLTYPEKVSRYNIEKLRQRVSNGPQKYPGANYIISMDGSR 2469
            ISPDPNLK+TEVA+P+ MA +LTYPE+V+ +NIEKLRQ V+NG  KYPGA  +   DGS 
Sbjct: 370  ISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYPDGSS 429

Query: 2468 QSIRHGNPRRLAAELKYGSIVERHLEDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFN 2289
            + +     +R+A ELK G IV RHLEDGD+VLFNRQPSLHRMSIM HRAR+MPWRTLRFN
Sbjct: 430  KMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFN 489

Query: 2288 ESVCNPYNADFDGDEMNLHVPQTEEARTEALSLMGIQNNLCTPKNGDILVASTQDFLTSS 2109
            ESVCNPYNADFDGDEMN+HVPQTEEARTEA  LMG+QNNLCTPKNG+ILVASTQDFLTSS
Sbjct: 490  ESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDFLTSS 549

Query: 2108 FLITRKDTFYDRCAFCLMCSYMGDGSEHIDLPTPAILKPIELWTGKQLFSVLVRPNAKMR 1929
            FLITRKDTFYDR AF LMCSYM DG + +DLPTP++LKPIELWTGKQLFSVL+RP+A +R
Sbjct: 550  FLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRPHANVR 609

Query: 1928 VFVNFIVMEKNYS-------KTGETMCPNDGCVYFRNSELISGQLGKATLGNGNKSGLFS 1770
            V+VN I+ EKNYS       K  ETMCPNDG VYFRNSELISGQLGKATLGNGNK GL+S
Sbjct: 610  VYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNKDGLYS 669

Query: 1769 VLLRDYNAYAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTAKKEERVTEGYNKCD 1590
            +LLRDYNAYAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG +L  +K + ++ GY  C+
Sbjct: 670  ILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGYRHCN 729

Query: 1589 KHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRELAGSVCLRELHWRNSPLIMSQCGS 1410
            K I  YN G+L L+ GC+A QTLE EIT  LNK+RE AG VC++ELHWRNSPLIMSQCGS
Sbjct: 730  KLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWRNSPLIMSQCGS 789

Query: 1409 KGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKKPAAKGFVANSFYTGLTAT 1230
            KGSPINISQMIACVGQQSVGG RAP+GFIDRSLPHFPR  K PAAKGFVANSFY+GL+AT
Sbjct: 790  KGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSAT 849

Query: 1229 EFFFHTMGGREGLVDTAVKTAETGYMSRRLMKALEDLSTHYDGTVRSANSAIVQFLYGDD 1050
            EFFFHTMGGREGLVDTAVKTA+TGYM+RRL K LEDL   YD TV+ A   IVQFLYGDD
Sbjct: 850  EFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGGIVQFLYGDD 909

Query: 1049 AMDPVHMEGKDGEPLNLDRLLMKTKATCPANGSPALSVSELSKRVDERLSKYDMQPEAGC 870
             +DP  MEGK G PLN DRL MK KATC A     LS S++S  V   L K++   +  C
Sbjct: 910  GLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLLLKHNGTLDGIC 969

Query: 869  SAAFRNSLFNFLEKYISNVK-KTRLTLGLSEEK-NNDPDLAGL-------ENIALDICGF 717
            S +FR SL +FL      ++   +L  G+  E   N  ++ GL       E IA  + G 
Sbjct: 970  SESFRKSLSSFLGDQAKRLECLMKLVDGVEVENFENIKNVEGLTGISKNTEKIAQKVSGI 1029

Query: 716  TARQLEVFLETCIKRYHSKRMEAGAAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 537
            T +QLEVFL+TC+ RY  KR+E G A+GAIGAQSIGEPGTQMTLKTFHFAGVASMN+T G
Sbjct: 1030 TEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQG 1089

Query: 536  VPRIKEIINAAKNISTPIITAKLISDNDVKAARIVKGRIEKTVLGEVAKSIKTVLKPLQA 357
            VPRIKEIIN AK ISTPIIT +L  +++V AARI+KGRI+KTVLG+VAKSIK V+    A
Sbjct: 1090 VPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIVMTSRSA 1149

Query: 356  FISVKLDMRIIESLQLEITAYTVAESILKTPKLKIKQQNLRVLDHEKLHIFPPEADRLKI 177
             + V LDM+ I   QL + A  V E IL+TPK+K K Q + VL+  KL +F P  DR K+
Sbjct: 1150 SVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVF-PGGDRNKL 1208

Query: 176  YFALHSLRNKLPKVIVKGISTVERAVINQDK----------GKYNLLVEGTNLAAVMGTQ 27
            +F LHSL+N LP V+VKGI TVER VI Q K           KYN+ VEG  L AVMGT+
Sbjct: 1209 HFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEGMGLQAVMGTE 1268

Query: 26   GVDGINTK 3
            GVDG  TK
Sbjct: 1269 GVDGRKTK 1276