BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00007707
         (1438 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002970642.1| hypothetical protein SELMODRAFT_411379 [Sela...   252   3e-64
ref|XP_002968468.1| hypothetical protein SELMODRAFT_409308 [Sela...   249   2e-63
gb|ABK26202.1| unknown [Picea sitchensis]                             208   4e-51
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              182   2e-43
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   179   2e-42
ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Popu...   179   3e-42
ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Popu...   177   1e-41
gb|EOY11663.1| Tetratricopeptide repeat (TPR)-like superfamily p...   176   2e-41
gb|EOY11661.1| Tetratricopeptide repeat (TPR)-like superfamily p...   176   2e-41
gb|EOY11660.1| Tetratricopeptide repeat-like superfamily protein...   176   2e-41
ref|XP_006605810.1| PREDICTED: RNA polymerase II-associated prot...   176   2e-41
ref|XP_006605809.1| PREDICTED: RNA polymerase II-associated prot...   176   2e-41
ref|XP_006605808.1| PREDICTED: RNA polymerase II-associated prot...   176   2e-41
ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated prot...   176   2e-41
ref|XP_006375724.1| hypothetical protein POPTR_0013s00980g [Popu...   175   5e-41
gb|EMJ06489.1| hypothetical protein PRUPE_ppa006661mg [Prunus pe...   174   6e-41
ref|XP_006605805.1| PREDICTED: RNA polymerase II-associated prot...   174   8e-41
ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated prot...   174   8e-41
ref|XP_006433540.1| hypothetical protein CICLE_v10003914mg [Citr...   174   1e-40
ref|XP_004960387.1| PREDICTED: RNA polymerase II-associated prot...   171   7e-40

>ref|XP_002970642.1| hypothetical protein SELMODRAFT_411379 [Selaginella moellendorffii]
            gi|300162158|gb|EFJ28772.1| hypothetical protein
            SELMODRAFT_411379 [Selaginella moellendorffii]
          Length = 444

 Score =  252 bits (643), Expect = 3e-64
 Identities = 141/357 (39%), Positives = 207/357 (57%)
 Frame = -3

Query: 1295 LNLSDKMKKNPMDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVECSSKET 1116
            ++   ++++N  + H F+  LQ+WE+ +K KD  +KT   D+ + L PVR +    ++  
Sbjct: 1    MDAQKQIRENTQELHDFLRGLQDWEKEVKNKDNELKTKSQDQVKELRPVREKKRAQAQ-- 58

Query: 1115 TRPNLAAKQTSAASHTYDYFRDKWDKFDVESALKEVDEVENKQFSQKDIKSSAKQNSRKE 936
                 AA   +AA HTYDYFRDKWDKFDV++AL+EVDE EN+Q   + + S +K+N    
Sbjct: 59   -----AAPSVNAAKHTYDYFRDKWDKFDVDAALREVDE-ENEQ---EKVASKSKEN---- 105

Query: 935  KRIPDISSRKKNFYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNK 756
                           DY   G   T  +        KG   +  +A++EKE GNE FK K
Sbjct: 106  ---------------DYAAKGTPQTFSNEAVQPDFEKG---SLPDAVTEKELGNELFKEK 147

Query: 755  KYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRG 576
            KY +AI+CY+RSI L+PTAV++ANRAMA +K+ RY +AE DCSEAI LDDRY KAY+RRG
Sbjct: 148  KYVQAIECYSRSIGLHPTAVAYANRAMALLKIRRYEDAEMDCSEAIALDDRYTKAYARRG 207

Query: 575  AARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIEEI 396
             AR+E   L+ A++DFEFALRLEP NK+LQK +EEA+ + EK    + P+ K  ++++  
Sbjct: 208  TARRERDKLLGAVEDFEFALRLEPHNKDLQKQYEEAKALYEKKNAYRPPEDKVTLQVQR- 266

Query: 395  TKDSSLVCGDPKQKSGVCERRLDNNASVCIEESTMDSLAIAGSDGQRGAISTDQASP 225
               SS+   +  +       +  N      +E+ M +  I  +     A++    +P
Sbjct: 267  ---SSIKAVNGAESMKKTSSQTSNGKQPVKDEAAMQASTIRAAATAMNAVTQHMVAP 320


>ref|XP_002968468.1| hypothetical protein SELMODRAFT_409308 [Selaginella moellendorffii]
            gi|300164112|gb|EFJ30722.1| hypothetical protein
            SELMODRAFT_409308 [Selaginella moellendorffii]
          Length = 444

 Score =  249 bits (637), Expect = 2e-63
 Identities = 133/298 (44%), Positives = 188/298 (63%)
 Frame = -3

Query: 1295 LNLSDKMKKNPMDFHQFVYDLQEWERSIKEKDKRIKTNRPDEKESLPPVRARVECSSKET 1116
            ++   ++++N  + H F+  LQ+WE+ +K KD  +KT   D+ + L PVR +    ++  
Sbjct: 1    MDAQKQIRENTQELHDFLRGLQDWEKEVKNKDNELKTKSQDQVKELRPVREKKRAQAQ-- 58

Query: 1115 TRPNLAAKQTSAASHTYDYFRDKWDKFDVESALKEVDEVENKQFSQKDIKSSAKQNSRKE 936
                 AA   +AA HTYDYFRDKWDKFDV++AL+EVDE EN+Q   + + S +K+N    
Sbjct: 59   -----AAPSVNAAKHTYDYFRDKWDKFDVDAALREVDE-ENEQ---EKVASKSKEN---- 105

Query: 935  KRIPDISSRKKNFYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNK 756
                           DY   G   T  +        KG   +  +A++EKE GNE FK K
Sbjct: 106  ---------------DYAAEGTPQTFSNEAVQPDFEKG---SLPDAVTEKELGNELFKEK 147

Query: 755  KYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRG 576
            KY +AI+CY+RSI L+PTAV++ANRAMA +K+ RY +AE DCSEAI LDDRY KAY+RRG
Sbjct: 148  KYVQAIECYSRSIGLHPTAVAYANRAMALLKIRRYEDAEMDCSEAIALDDRYTKAYARRG 207

Query: 575  AARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKLPDKKAPVRIE 402
             AR+E   L+ A++DFEFALRLEP NK+LQK +EEA+ + EK    + P+ K  ++++
Sbjct: 208  TARRERDKLLGAVEDFEFALRLEPHNKDLQKQYEEAKALYEKKNAYRPPEDKVTLQVQ 265


>gb|ABK26202.1| unknown [Picea sitchensis]
          Length = 369

 Score =  208 bits (530), Expect = 4e-51
 Identities = 121/263 (46%), Positives = 166/263 (63%)
 Frame = -3

Query: 791 EKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINL 612
           EKEQGNEYFK KKY+EAIDCY+RSI+L PTAV+FANRAMAY+K+ R+ EAEYDCSEAI+L
Sbjct: 3   EKEQGNEYFKEKKYAEAIDCYSRSIVLQPTAVAFANRAMAYIKMRRFEEAEYDCSEAIDL 62

Query: 611 DDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRKL 432
           DDRYVKAYSRRG A+KELG L+DAIDDFEFALRLEP NKEL+K +EEA++M  +++ +K+
Sbjct: 63  DDRYVKAYSRRGTAKKELGKLLDAIDDFEFALRLEPENKELKKQYEEARRMYGESIAKKI 122

Query: 431 PDKKAPVRIEEITKDSSLVCGDPKQKSGVCERRLDNNASVCIEESTMDSLAIAGSDGQRG 252
           P+KKA V IEE+  D ++   +  +      R+           S+    A+A +  +  
Sbjct: 123 PEKKARVGIEELKSDPAVKAAEKGEIKAPLGRK---------PSSSSCDPALAKAPSKLE 173

Query: 251 AISTDQASPLKEISVASNSSAVPLVSKTSAADKKQTECSNSPVPFISKTSAADTKRRASN 72
           A      S +K+IS  SN S            +KQ   +++PV      S A   + +  
Sbjct: 174 ADPKKTESGVKQIS--SNRS------------QKQDSLASTPVVAARGASHAINSKNSQK 219

Query: 71  NKQESTLKEISVANSSSAVPLVS 3
               ++ + ++   +S AV  V+
Sbjct: 220 QDLLASTQVVAARAASRAVSAVA 242


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  182 bits (463), Expect = 2e-43
 Identities = 107/246 (43%), Positives = 148/246 (60%), Gaps = 3/246 (1%)
 Frame = -3

Query: 1163 SLPP-VRARVECSSKETTRPNLAAKQTSAASHTYDYFRDKWDKFDVESALKEVDEVENKQ 987
            SLPP V  R  C    +      +K   A     D+     D  D E +LKE D+    Q
Sbjct: 607  SLPPIVEGRRRCWRSVSMATRFPSKH--ARDQALDFQGFLTDLQDWELSLKEKDKKMKAQ 664

Query: 986  FSQKDIKSSAK--QNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSIDKVSSILKGPQD 813
              +KD+ ++    ++S K    P +S R      D   + +     +I ++SS     ++
Sbjct: 665  AEEKDVPTARGNVKHSSKLSSSPGVSLRLGQSRSDTRQHEYSRNHDAISRISSSFM-TEE 723

Query: 812  TASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYD 633
            +  +A SEKE GNEYFK +K+ EAIDCY+RSI L PTAV++ANRAMAY+K+ R+ EAE D
Sbjct: 724  SLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDD 783

Query: 632  CSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNE 453
            C EA+NLDDRY+KAYSRR  ARKELG   +A +D EFALRLEP N+E++K + EA+ + E
Sbjct: 784  CMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYE 843

Query: 452  KNLRRK 435
            K + +K
Sbjct: 844  KEILQK 849


>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
            vinifera]
          Length = 474

 Score =  179 bits (455), Expect = 2e-42
 Identities = 97/205 (47%), Positives = 135/205 (65%), Gaps = 2/205 (0%)
 Frame = -3

Query: 1043 DKFDVESALKEVDEVENKQFSQKDIKSSAK--QNSRKEKRIPDISSRKKNFYDDYTGNGH 870
            D  D E +LKE D+    Q  +KD+ ++    ++S K    P +S R      D   + +
Sbjct: 23   DLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGVSLRLGQSRSDTRQHEY 82

Query: 869  MGTLGSIDKVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSF 690
                 +I ++SS     +++  +A SEKE GNEYFK +K+ EAIDCY+RSI L PTAV++
Sbjct: 83   SRNHDAISRISSSFM-TEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAY 141

Query: 689  ANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRL 510
            ANRAMAY+K+ R+ EAE DC EA+NLDDRY+KAYSRR  ARKELG   +A +D EFALRL
Sbjct: 142  ANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRL 201

Query: 509  EPGNKELQKHFEEAQKMNEKNLRRK 435
            EP N+E++K + EA+ + EK + +K
Sbjct: 202  EPQNQEIKKQYAEAKSLYEKEILQK 226


>ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
            gi|550337753|gb|ERP60190.1| hypothetical protein
            POPTR_0005s01710g [Populus trichocarpa]
          Length = 402

 Score =  179 bits (453), Expect = 3e-42
 Identities = 125/347 (36%), Positives = 182/347 (52%), Gaps = 15/347 (4%)
 Frame = -3

Query: 1019 LKEVDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSIDKV 840
            LK+ D+   K+    D+K      S  +    D SSR  +   +Y+ N      G+I+++
Sbjct: 29   LKDTDKKMKKKSRASDVKIGEDGRSEGKTSAAD-SSRSGSGQYEYSRN-----FGAINRL 82

Query: 839  SSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKV 660
            SS     + T  +A +EKE GNEYFK KK++EAI+CY+RSI L PTAV++ANRAMAY+K+
Sbjct: 83   SSSFTTDEITV-DATTEKELGNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKI 141

Query: 659  GRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKH 480
             R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG L ++I+D EFAL+LEP N+E++K 
Sbjct: 142  KRFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQ 201

Query: 479  FEEAQKMNEK--------NLRRKLPDKKAPVRIEEITKDSSL-VCGDPKQKSGVCERRLD 327
            + E + + EK         LR  L   +   R E      ++       QK+GV   + D
Sbjct: 202  YAEVKSLYEKEILQKASGTLRSSLQGTQQGGRSEASVNGHAVHPVSIATQKTGVSASKKD 261

Query: 326  NNASVCIEESTMDSLAI------AGSDGQRGAISTDQASPLKEISVASNSSAVPLVSKTS 165
            N            S+ +      + SDG  G  S   A+P         SS+V  V K +
Sbjct: 262  NTKENDGNNLVKKSVHVKELRNRSKSDGHVGNDSPANATP---------SSSVESVQKNN 312

Query: 164  AADKKQTECSNSPVPFISKTSAADTKRRASNNKQESTLKEISVANSS 24
               +++            KTS  +   +A++       K I+  NS+
Sbjct: 313  RTRRQEL-----------KTSVIELASQAASRAMAEAAKNITPPNSA 348


>ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
            gi|550337752|gb|ERP60189.1| hypothetical protein
            POPTR_0005s01710g [Populus trichocarpa]
          Length = 462

 Score =  177 bits (449), Expect = 1e-41
 Identities = 127/352 (36%), Positives = 186/352 (52%), Gaps = 20/352 (5%)
 Frame = -3

Query: 1019 LKEVDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSIDKV 840
            LK+ D+   K+    D+K      S  +    D SSR  +   +Y+ N      G+I+++
Sbjct: 19   LKDTDKKMKKKSRASDVKIGEDGRSEGKTSAAD-SSRSGSGQYEYSRN-----FGAINRL 72

Query: 839  SSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKV 660
            SS     + T  +A +EKE GNEYFK KK++EAI+CY+RSI L PTAV++ANRAMAY+K+
Sbjct: 73   SSSFTTDEITV-DATTEKELGNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKI 131

Query: 659  GRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKH 480
             R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG L ++I+D EFAL+LEP N+E++K 
Sbjct: 132  KRFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQ 191

Query: 479  FEEAQKMNEK--------NLRRKLPDKKAPVRIEEITKDSSL-VCGDPKQKSGVCERRLD 327
            + E + + EK         LR  L   +   R E      ++       QK+GV   + D
Sbjct: 192  YAEVKSLYEKEILQKASGTLRSSLQGTQQGGRSEASVNGHAVHPVSIATQKTGVSASKKD 251

Query: 326  NNASVCIEESTMDSLA-----------IAGSDGQRGAISTDQASPLKEISVASNSSAVPL 180
             N  +  EE+  ++L             + SDG  G  S   A+P         SS+V  
Sbjct: 252  -NTKLEQEENDGNNLVKKSVHVKELRNRSKSDGHVGNDSPANATP---------SSSVES 301

Query: 179  VSKTSAADKKQTECSNSPVPFISKTSAADTKRRASNNKQESTLKEISVANSS 24
            V K +   +++            KTS  +   +A++       K I+  NS+
Sbjct: 302  VQKNNRTRRQEL-----------KTSVIELASQAASRAMAEAAKNITPPNSA 342


>gb|EOY11663.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 4 [Theobroma cacao]
          Length = 421

 Score =  176 bits (447), Expect = 2e-41
 Identities = 99/222 (44%), Positives = 139/222 (62%), Gaps = 4/222 (1%)
 Frame = -3

Query: 1034 DVESALKEVDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLG 855
            D E +LKE D++   Q S K+  ++ K     +  + D S+     YD          L 
Sbjct: 22   DWELSLKEKDKIMKSQASDKEQLTNEKGRPTGKSSLIDSSTTSSRQYD---------YLQ 72

Query: 854  SIDKVSSILKG--PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANR 681
            + DK +S+      ++   +A SEKE GNEYFK KK+ EAIDCY+RSI L PTAV+ ANR
Sbjct: 73   NYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIGLSPTAVAHANR 132

Query: 680  AMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPG 501
            AMAY+K+ ++ EAE DC+EA+NLDDRY+KAYSRR  ARKELG L ++I+D EFALRLEP 
Sbjct: 133  AMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDTEFALRLEPN 192

Query: 500  NKELQKHFEEAQKMNEKNLRRKLPD--KKAPVRIEEITKDSS 381
            N+E++K   E + + EK + +K     +K+    +E+ K  +
Sbjct: 193  NQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSET 234


>gb|EOY11661.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 2 [Theobroma cacao]
          Length = 422

 Score =  176 bits (447), Expect = 2e-41
 Identities = 100/223 (44%), Positives = 141/223 (63%), Gaps = 5/223 (2%)
 Frame = -3

Query: 1034 DVESALKEVDEVENKQFSQKD-IKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTL 858
            D E +LKE D++   Q S K+ +K++ K     +  + D S+     YD          L
Sbjct: 22   DWELSLKEKDKIMKSQASDKEQLKTNEKGRPTGKSSLIDSSTTSSRQYD---------YL 72

Query: 857  GSIDKVSSILKG--PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFAN 684
             + DK +S+      ++   +A SEKE GNEYFK KK+ EAIDCY+RSI L PTAV+ AN
Sbjct: 73   QNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIGLSPTAVAHAN 132

Query: 683  RAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEP 504
            RAMAY+K+ ++ EAE DC+EA+NLDDRY+KAYSRR  ARKELG L ++I+D EFALRLEP
Sbjct: 133  RAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDTEFALRLEP 192

Query: 503  GNKELQKHFEEAQKMNEKNLRRKLPD--KKAPVRIEEITKDSS 381
             N+E++K   E + + EK + +K     +K+    +E+ K  +
Sbjct: 193  NNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSET 235


>gb|EOY11660.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 1
            [Theobroma cacao]
          Length = 468

 Score =  176 bits (447), Expect = 2e-41
 Identities = 99/222 (44%), Positives = 139/222 (62%), Gaps = 4/222 (1%)
 Frame = -3

Query: 1034 DVESALKEVDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLG 855
            D E +LKE D++   Q S K+  ++ K     +  + D S+     YD          L 
Sbjct: 22   DWELSLKEKDKIMKSQASDKEQLTNEKGRPTGKSSLIDSSTTSSRQYD---------YLQ 72

Query: 854  SIDKVSSILKG--PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANR 681
            + DK +S+      ++   +A SEKE GNEYFK KK+ EAIDCY+RSI L PTAV+ ANR
Sbjct: 73   NYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIGLSPTAVAHANR 132

Query: 680  AMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPG 501
            AMAY+K+ ++ EAE DC+EA+NLDDRY+KAYSRR  ARKELG L ++I+D EFALRLEP 
Sbjct: 133  AMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDTEFALRLEPN 192

Query: 500  NKELQKHFEEAQKMNEKNLRRKLPD--KKAPVRIEEITKDSS 381
            N+E++K   E + + EK + +K     +K+    +E+ K  +
Sbjct: 193  NQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSET 234


>ref|XP_006605810.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X10
            [Glycine max]
          Length = 409

 Score =  176 bits (446), Expect = 2e-41
 Identities = 113/328 (34%), Positives = 180/328 (54%), Gaps = 31/328 (9%)
 Frame = -3

Query: 1010 VDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSID--KVS 837
            ++++++ +FS+KD     K+N+   +    +   K +  D  + +    + G  D  +++
Sbjct: 7    LNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRIN 66

Query: 836  SILKG--PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMK 663
             +     P+D   +A SEK+ GNE+FK KK+ EA DCY+RSI L PTAV++ANRAMA +K
Sbjct: 67   HLHSSFVPEDVP-DAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIK 125

Query: 662  VGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQK 483
            + R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG + +++DD EFALRLEP N+E++K
Sbjct: 126  LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKK 185

Query: 482  HFEEAQKMNEKNLRRKLP---------DKKAPVRIEEITKDSSLVCGDPKQKSGVCE--- 339
             + +A+   EK++ +K            +K     E++  DS        QKSG+ E   
Sbjct: 186  QYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHH 245

Query: 338  RRLDNNASVCIEESTM----DSLAI--------AGSDGQRGAISTDQASPLKEISVAS-- 201
             + DN   + ++ES +    D   I         G DG +G +S   +   +   +    
Sbjct: 246  HKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPE 305

Query: 200  -NSSAVPLVSKTSAADKKQTECSNSPVP 120
              +S   L S+  AA +  +E + +  P
Sbjct: 306  MKASVQQLASR--AASRAMSEAAKNVTP 331


>ref|XP_006605809.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X9
            [Glycine max]
          Length = 420

 Score =  176 bits (446), Expect = 2e-41
 Identities = 113/328 (34%), Positives = 180/328 (54%), Gaps = 31/328 (9%)
 Frame = -3

Query: 1010 VDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSID--KVS 837
            ++++++ +FS+KD     K+N+   +    +   K +  D  + +    + G  D  +++
Sbjct: 7    LNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRIN 66

Query: 836  SILKG--PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMK 663
             +     P+D   +A SEK+ GNE+FK KK+ EA DCY+RSI L PTAV++ANRAMA +K
Sbjct: 67   HLHSSFVPEDVP-DAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIK 125

Query: 662  VGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQK 483
            + R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG + +++DD EFALRLEP N+E++K
Sbjct: 126  LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKK 185

Query: 482  HFEEAQKMNEKNLRRKLP---------DKKAPVRIEEITKDSSLVCGDPKQKSGVCE--- 339
             + +A+   EK++ +K            +K     E++  DS        QKSG+ E   
Sbjct: 186  QYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHH 245

Query: 338  RRLDNNASVCIEESTM----DSLAI--------AGSDGQRGAISTDQASPLKEISVAS-- 201
             + DN   + ++ES +    D   I         G DG +G +S   +   +   +    
Sbjct: 246  HKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPE 305

Query: 200  -NSSAVPLVSKTSAADKKQTECSNSPVP 120
              +S   L S+  AA +  +E + +  P
Sbjct: 306  MKASVQQLASR--AASRAMSEAAKNVTP 331


>ref|XP_006605808.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X8
            [Glycine max]
          Length = 425

 Score =  176 bits (446), Expect = 2e-41
 Identities = 113/328 (34%), Positives = 180/328 (54%), Gaps = 31/328 (9%)
 Frame = -3

Query: 1010 VDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSID--KVS 837
            ++++++ +FS+KD     K+N+   +    +   K +  D  + +    + G  D  +++
Sbjct: 7    LNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRIN 66

Query: 836  SILKG--PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMK 663
             +     P+D   +A SEK+ GNE+FK KK+ EA DCY+RSI L PTAV++ANRAMA +K
Sbjct: 67   HLHSSFVPEDVP-DAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIK 125

Query: 662  VGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQK 483
            + R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG + +++DD EFALRLEP N+E++K
Sbjct: 126  LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKK 185

Query: 482  HFEEAQKMNEKNLRRKLP---------DKKAPVRIEEITKDSSLVCGDPKQKSGVCE--- 339
             + +A+   EK++ +K            +K     E++  DS        QKSG+ E   
Sbjct: 186  QYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHH 245

Query: 338  RRLDNNASVCIEESTM----DSLAI--------AGSDGQRGAISTDQASPLKEISVAS-- 201
             + DN   + ++ES +    D   I         G DG +G +S   +   +   +    
Sbjct: 246  HKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPE 305

Query: 200  -NSSAVPLVSKTSAADKKQTECSNSPVP 120
              +S   L S+  AA +  +E + +  P
Sbjct: 306  MKASVQQLASR--AASRAMSEAAKNVTP 331


>ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X1
            [Glycine max] gi|571565701|ref|XP_006605802.1| PREDICTED:
            RNA polymerase II-associated protein 3-like isoform X2
            [Glycine max] gi|571565704|ref|XP_006605803.1| PREDICTED:
            RNA polymerase II-associated protein 3-like isoform X3
            [Glycine max] gi|571565707|ref|XP_006605804.1| PREDICTED:
            RNA polymerase II-associated protein 3-like isoform X4
            [Glycine max]
          Length = 455

 Score =  176 bits (446), Expect = 2e-41
 Identities = 113/328 (34%), Positives = 180/328 (54%), Gaps = 31/328 (9%)
 Frame = -3

Query: 1010 VDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSID--KVS 837
            ++++++ +FS+KD     K+N+   +    +   K +  D  + +    + G  D  +++
Sbjct: 7    LNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRIN 66

Query: 836  SILKG--PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMK 663
             +     P+D   +A SEK+ GNE+FK KK+ EA DCY+RSI L PTAV++ANRAMA +K
Sbjct: 67   HLHSSFVPEDVP-DAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIK 125

Query: 662  VGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQK 483
            + R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG + +++DD EFALRLEP N+E++K
Sbjct: 126  LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKK 185

Query: 482  HFEEAQKMNEKNLRRKLP---------DKKAPVRIEEITKDSSLVCGDPKQKSGVCE--- 339
             + +A+   EK++ +K            +K     E++  DS        QKSG+ E   
Sbjct: 186  QYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHH 245

Query: 338  RRLDNNASVCIEESTM----DSLAI--------AGSDGQRGAISTDQASPLKEISVAS-- 201
             + DN   + ++ES +    D   I         G DG +G +S   +   +   +    
Sbjct: 246  HKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPE 305

Query: 200  -NSSAVPLVSKTSAADKKQTECSNSPVP 120
              +S   L S+  AA +  +E + +  P
Sbjct: 306  MKASVQQLASR--AASRAMSEAAKNVTP 331


>ref|XP_006375724.1| hypothetical protein POPTR_0013s00980g [Populus trichocarpa]
            gi|550324657|gb|ERP53521.1| hypothetical protein
            POPTR_0013s00980g [Populus trichocarpa]
          Length = 260

 Score =  175 bits (443), Expect = 5e-41
 Identities = 92/195 (47%), Positives = 128/195 (65%)
 Frame = -3

Query: 1019 LKEVDEVENKQFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSIDKV 840
            LK+ D+   K+    D+K    + S  +    D SS     YD      H     +I+++
Sbjct: 19   LKDTDKKMKKKSQASDMKIGEDERSTGKTSAVDFSS-SSGMYD------HARNFDAINRL 71

Query: 839  SSILKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKV 660
            S+     + T  +A +EKE GNEYFK KKY EAI+CY+RSI L PTAV++ANRAMAY+K+
Sbjct: 72   SNSFAIDESTV-DATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAYANRAMAYLKI 130

Query: 659  GRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKH 480
             R+ EAE DC+EA+NLDDRY+KAYSRR   RKELG L ++I+D EFAL+LEP N+E++K 
Sbjct: 131  KRFPEAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEPNNQEIKKQ 190

Query: 479  FEEAQKMNEKNLRRK 435
            + E + + EK + +K
Sbjct: 191  YAEVKSLYEKEILQK 205


>gb|EMJ06489.1| hypothetical protein PRUPE_ppa006661mg [Prunus persica]
          Length = 401

 Score =  174 bits (442), Expect = 6e-41
 Identities = 92/181 (50%), Positives = 129/181 (71%)
 Frame = -3

Query: 977 KDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSIDKVSSILKGPQDTASEA 798
           KD K   K + +++ +  D+ +   N+  DY+ N     L SI+ +SS     +D+  +A
Sbjct: 23  KDKKMRPKDSHQEKLKTRDLGTSSGNY--DYSRN-----LDSINTMSSSFIS-EDSLPDA 74

Query: 797 LSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAI 618
            SEKE GNEYFK KK+ EAIDCY+RSI L P+AV++ANRAMAY+K+  + EAE DC+EA+
Sbjct: 75  ASEKELGNEYFKQKKFREAIDCYSRSIALSPSAVAYANRAMAYIKIKSFQEAEDDCTEAL 134

Query: 617 NLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRR 438
           NLDDRY+KAYSRR  ARKELG L ++I+D EFALRLEP N+E++K + EA+ + +K + +
Sbjct: 135 NLDDRYIKAYSRRATARKELGKLKESIEDAEFALRLEPQNQEIKKQYTEAKSLYDKTILQ 194

Query: 437 K 435
           K
Sbjct: 195 K 195


>ref|XP_006605805.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X5
           [Glycine max]
          Length = 445

 Score =  174 bits (441), Expect = 8e-41
 Identities = 113/321 (35%), Positives = 174/321 (54%), Gaps = 31/321 (9%)
 Frame = -3

Query: 989 QFSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSID--KVSSILKG-- 822
           +FS+KD     K+N+   +    +   K +  D  + +    + G  D  +++ +     
Sbjct: 4   EFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRINHLHSSFV 63

Query: 821 PQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEA 642
           P+D   +A SEK+ GNE+FK KK+ EA DCY+RSI L PTAV++ANRAMA +K+ R+ EA
Sbjct: 64  PEDVP-DAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEA 122

Query: 641 EYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQK 462
           E DC+EA+NLDDRY+KAYSRR  ARKELG + +++DD EFALRLEP N+E++K + +A+ 
Sbjct: 123 EDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKS 182

Query: 461 MNEKNLRRKLP---------DKKAPVRIEEITKDSSLVCGDPKQKSGVCE---RRLDNNA 318
             EK++ +K            +K     E++  DS        QKSG+ E    + DN  
Sbjct: 183 FYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHHHKKDNKR 242

Query: 317 SVCIEESTM----DSLAI--------AGSDGQRGAISTDQASPLKEISVAS---NSSAVP 183
            + ++ES +    D   I         G DG +G +S   +   +   +      +S   
Sbjct: 243 QILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPEMKASVQQ 302

Query: 182 LVSKTSAADKKQTECSNSPVP 120
           L S+  AA +  +E + +  P
Sbjct: 303 LASR--AASRAMSEAAKNVTP 321


>ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated protein 3-like [Citrus
           sinensis]
          Length = 438

 Score =  174 bits (441), Expect = 8e-41
 Identities = 102/222 (45%), Positives = 137/222 (61%), Gaps = 7/222 (3%)
 Frame = -3

Query: 983 SQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSIDKVSSILKGPQDTAS 804
           ++KD K   K +S+       + S KK      +GN +      +  +SS L   + T  
Sbjct: 27  NEKDKKMKHKASSKDNLVSSSLKSAKK---PSPSGNSYSRNYDPVSHISSSLMNEESTP- 82

Query: 803 EALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSE 624
           +A SEKE GNE FK KK+ EAIDCY+RSI L PTAV++ANRAMAY+K+ R+ EAE DC+E
Sbjct: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 142

Query: 623 AINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNL 444
           A+NLDDRY+KAYSRR  ARKELG L ++I+D EFALRLEP N+E++K   E + + EK +
Sbjct: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202

Query: 443 RRKLPDKKAPVRIEEITKDSSLVCG-------DPKQKSGVCE 339
                 +KA   +E+  K    V G       +  QK+GV E
Sbjct: 203 -----FQKASKTLEKYGKSGMKVNGHEVRAVRNTTQKTGVAE 239


>ref|XP_006433540.1| hypothetical protein CICLE_v10003914mg [Citrus clementina]
            gi|557535662|gb|ESR46780.1| hypothetical protein
            CICLE_v10003914mg [Citrus clementina]
          Length = 977

 Score =  174 bits (440), Expect = 1e-40
 Identities = 114/291 (39%), Positives = 161/291 (55%), Gaps = 16/291 (5%)
 Frame = -3

Query: 1163 SLPPVRARVECSSKETTRP----NLAAKQTSAASHTYDYFRDKWDKFDVESALKEVDEVE 996
            S PP R +  C++   T P    +  +K    +   Y    +K    + + AL     + 
Sbjct: 499  SYPPPREK--CAAPSCTNPYKYRDSKSKLPLCSLQCYKAINEKMPPHNRDQALDFQGFLN 556

Query: 995  NKQ-----FSQKDIKSSAKQNSRKEKRIPDISSRKKNFYDDYTGNGHMGTLGSIDKVSSI 831
            + Q       +KD K   K +S+       + S +K      +GN +      + ++SS 
Sbjct: 557  DLQDWDLSLHEKDKKMKHKASSKDNLVSSSLKSGEK---PSPSGNSYSRNYDPVSRISSS 613

Query: 830  LKGPQDTASEALSEKEQGNEYFKNKKYSEAIDCYTRSILLYPTAVSFANRAMAYMKVGRY 651
            L   + T  +A SEKE GNE FK KK+ EAIDCY+RSI L PTAV++ANRAMAY+K+ R+
Sbjct: 614  LMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRF 672

Query: 650  AEAEYDCSEAINLDDRYVKAYSRRGAARKELGNLIDAIDDFEFALRLEPGNKELQKHFEE 471
             EAE DC+EA+NLDDRY+KAYSRR  ARKELG L ++I+D EFALRLEP N+E++K   E
Sbjct: 673  QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 732

Query: 470  AQKMNEKNLRRKLPDKKAPVRIEEITKDSSLVCG-------DPKQKSGVCE 339
             + + EK +      +KA   +E+  K    V G       +  QK+GV E
Sbjct: 733  VKSLYEKEV-----FQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAE 778


>ref|XP_004960387.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
           [Setaria italica]
          Length = 398

 Score =  171 bits (433), Expect = 7e-40
 Identities = 106/222 (47%), Positives = 137/222 (61%), Gaps = 12/222 (5%)
 Frame = -3

Query: 890 DYTG--NGHMGT-LGSID-----KVSSILKGPQDTASEALSEKEQGNEYFKNKKYSEAID 735
           +YT   NG  GT  GS       K SS L    +   +A SEKEQGNEYFK KK++EAI+
Sbjct: 2   EYTARSNGTSGTSAGSFGGPYNMKYSSYLN--DEPMPDAASEKEQGNEYFKQKKFTEAIE 59

Query: 734 CYTRSILLYPTAVSFANRAMAYMKVGRYAEAEYDCSEAINLDDRYVKAYSRRGAARKELG 555
           CY+RSI L PTAV+FANRAMAY+K+ R+ EAE DC+EA+NLDDRY+KAYSRR  ARKELG
Sbjct: 60  CYSRSIGLSPTAVAFANRAMAYLKLRRFKEAEDDCTEALNLDDRYIKAYSRRITARKELG 119

Query: 554 NLIDAIDDFEFALRLEPGNKELQKHFEEAQKMNEKNLRRK--LPDKKAPVRIEEITKDSS 381
            L +A+DD EFA+ LEP N EL+K + E + ++ + L +K  +P K A   +++      
Sbjct: 120 KLKEAMDDAEFAISLEPNNPELRKQYTEIKALHMEKLGKKTPVPTKHAVSGLDKPADKKD 179

Query: 380 LVCGDP--KQKSGVCERRLDNNASVCIEESTMDSLAIAGSDG 261
           +    P   QK    E      A+V I ES   S +  G  G
Sbjct: 180 ITSHTPTISQKGSFMEVDSPTRAAVEIRESPGGSSSSKGGSG 221