BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00007479
         (1196 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   210   1e-51
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   207   5e-51
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   207   7e-51
gb|EPS69584.1| hypothetical protein M569_05182, partial [Genlise...   207   9e-51
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   207   9e-51
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]     206   2e-50
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   204   8e-50
gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao] gi|508...   203   1e-49
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]     201   5e-49
ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, part...   201   6e-49
ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,...   200   8e-49
ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thal...   200   1e-48
ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arab...   200   1e-48
gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus pe...   199   2e-48
ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,...   199   2e-48
ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,...   199   2e-48
ref|XP_004502613.1| PREDICTED: RNA polymerase sigma factor sigE,...   199   2e-48
ref|XP_002333134.1| predicted protein [Populus trichocarpa]           199   2e-48
ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplas...   198   4e-48
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   197   5e-48

>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  210 bits (534), Expect = 1e-51
 Identities = 123/332 (37%), Positives = 188/332 (56%), Gaps = 4/332 (1%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            KL++EYS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP 
Sbjct: 194  KLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQVKENLQNDLGREPT 253

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            D EVA+A  +    +R+ ++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N         F
Sbjct: 254  DGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANGS------RF 307

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++   S   +P  +      
Sbjct: 308  QDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVE 367

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT EE+   + L PE++ +V K +   +++   N   + E     
Sbjct: 368  IQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTTQEE----- 422

Query: 715  WIDNGSYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETA 888
             + NG   +   + D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A
Sbjct: 423  -LINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 481

Query: 889  KVLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
              L IS EMVRK E KA  KL+ P+R+D++++
Sbjct: 482  GNLNISREMVRKHEVKALMKLKHPTRVDYVRR 513


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score =  207 bits (528), Expect = 5e-51
 Identities = 119/332 (35%), Positives = 190/332 (57%), Gaps = 4/332 (1%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            KL++EYS      SLDW  +    VL  +EH WL +LMQPMK + + +++L+  +GREP 
Sbjct: 191  KLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREPT 250

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            D+E+A+A  +    V++ ++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N         F
Sbjct: 251  DVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGP------RF 304

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P R+ R STY  FWIRH + +++   S   +P  +      
Sbjct: 305  QDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGE 364

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT EE+   + + PE++++V K +    ++   +   + E     
Sbjct: 365  IQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE----- 419

Query: 715  WIDNGSYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETA 888
               NG   +   EN+       ++  +DD+L SL P+E  +I++R+G +GK +++L E A
Sbjct: 420  -FINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIA 478

Query: 889  KVLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
              L IS EMVRK E K   KL+ P+R+D+L+Q
Sbjct: 479  GNLNISREMVRKHEVKGLMKLKHPTRVDYLRQ 510


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 1 [Solanum
            lycopersicum]
          Length = 516

 Score =  207 bits (527), Expect = 7e-51
 Identities = 122/332 (36%), Positives = 186/332 (56%), Gaps = 4/332 (1%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            KL++EYS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP 
Sbjct: 194  KLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPT 253

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            D EVA+A  +    +R+ ++AG+AARNKLI+ NL+LVL+ +  Y Q+F+N         F
Sbjct: 254  DGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANAS------RF 307

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P RK R STY  FWIRH + + +   S   +P  +      
Sbjct: 308  QDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVE 367

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT +E+   +   PE++ +V K +    ++   N   + E     
Sbjct: 368  IQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEE----- 422

Query: 715  WIDNGSYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETA 888
             + NG   +   + D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A
Sbjct: 423  -LINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 481

Query: 889  KVLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
              L IS EMVRK E KA  KL+ P+R+D++++
Sbjct: 482  GNLNISREMVRKHEVKALMKLKHPTRVDYVRR 513


>gb|EPS69584.1| hypothetical protein M569_05182, partial [Genlisea aurea]
          Length = 488

 Score =  207 bits (526), Expect = 9e-51
 Identities = 123/330 (37%), Positives = 190/330 (57%), Gaps = 2/330 (0%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L++EYS      SLDW  +    VL  SEH WL +LMQPMK   + ++ LK  +GREP 
Sbjct: 165  RLLREYSASADLSSLDWKKMKIPPVLPSSEHTWLFKLMQPMKETNKVKETLKVALGREPT 224

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            D E+A+A+ +    +R+ I+ G+A+RNKLI+ NL+LVL+ +  Y Q+FSN        +F
Sbjct: 225  DYELAEAMNMDPVPLRKRIEVGRASRNKLIRHNLRLVLFVMNKYFQDFSNGP------KF 278

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P RK R STY  FWIRH V +++   S   +   +      
Sbjct: 279  QDLCQAGVKGLITAIDRFEPKRKSRLSTYGLFWIRHAVVRSMTLSSFTKVSFGLESIRAE 338

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT EE+ N + +  E++++V +     ++++  +    NE  ++ 
Sbjct: 339  IQKTKMELMVKLQRRPTDEEIMNRVGISEERYREVMRVTKPVSSLNARHEL-TNEEFIAG 397

Query: 715  WIDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKV 894
              D       E D       ++  +DD+L SL P+EG +I++RYG +GK +++L E A  
Sbjct: 398  ISDADDV---EGDRRKELALLRLAIDDVLDSLKPKEGLVIRQRYGLDGKGDRTLGEVAGN 454

Query: 895  LGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            L IS EMVRK E KA  KL+ P+R+D+L++
Sbjct: 455  LNISREMVRKHEVKALMKLKHPARVDYLRR 484


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  207 bits (526), Expect = 9e-51
 Identities = 123/331 (37%), Positives = 186/331 (56%), Gaps = 4/331 (1%)
 Frame = +1

Query: 4    LIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPND 183
            L++EYS      SLDW  +    VL PSEH WL +LMQPMK   E +  L+  +GREP D
Sbjct: 197  LVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTD 256

Query: 184  MEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEFS 357
             E+A+A+ +    VRRH++ GQAARNKLI+ NL+LVL+ +  Y Q F+N        +F 
Sbjct: 257  GELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGP------KFQ 310

Query: 358  DLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXX 537
            DLC AG++GL+ A+DRF+P R  R STY  FWIRH + +++   S   +   +       
Sbjct: 311  DLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEI 370

Query: 538  XXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWW 717
                        R PT+EE+   + + PE++ +V + +    ++   +   + E      
Sbjct: 371  QRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEE------ 424

Query: 718  IDNGSYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAK 891
              NG   ++    D       ++  +DD+L SL P+E  ++++RYG +GK +++L E A 
Sbjct: 425  YINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAG 484

Query: 892  VLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
             L IS EMVRK E KA  KL+ P+R+D+L+Q
Sbjct: 485  NLSISREMVRKHEVKALMKLKHPARVDYLRQ 515


>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 517

 Score =  206 bits (523), Expect = 2e-50
 Identities = 120/330 (36%), Positives = 194/330 (58%), Gaps = 2/330 (0%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            KL++EYS      SLDW  +    VL  SEH WL +LMQP+K   +  + L+  +GREP 
Sbjct: 195  KLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLKQLFQVGEDLQKTLGREPT 254

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            + E+A+A  + +  V+RH++AG+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F
Sbjct: 255  ENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMNKYFQDFTNGP------KF 308

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P R+ R STY  FWIRH + +++   S   +   +      
Sbjct: 309  QDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVSFGLESVRAE 368

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT+EE+   + + PE++ +V + +    +++  ++  + E   + 
Sbjct: 369  IQKAKIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSRHVTTQEEFINAI 428

Query: 715  WIDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKV 894
               +G   +  +D   P L ++  +DD+L SL P+E  +I++RYG +GK +++L E A  
Sbjct: 429  TDVDG---VDGDDRRKPAL-LRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGN 484

Query: 895  LGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            L IS EMVRK E KA  KL+ P+R+D+L++
Sbjct: 485  LNISREMVRKHEVKALMKLKHPARVDYLRR 514


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 520

 Score =  204 bits (518), Expect = 8e-50
 Identities = 120/332 (36%), Positives = 191/332 (57%), Gaps = 4/332 (1%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L++EYS      SLDW  +    VL  SEH WL +LMQPMK   E ++ L+  +GREPN
Sbjct: 198  ELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKGLLEVKEILQKDLGREPN 257

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
              E+A+A  + +  V+RH++ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F
Sbjct: 258  KGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGP------KF 311

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P R+ R STY  FWIRH + +++   S   +   +      
Sbjct: 312  QDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAE 371

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT++E+   + + PE++ +V + +    +++  +   + E     
Sbjct: 372  IQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRHSVTQEE----- 426

Query: 715  WIDNGSYPIKENDPMDPRLE--VKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETA 888
               NG   +   D  + R    ++  +DD+L SL P+E  +I++RYG +GK +++L E A
Sbjct: 427  -FINGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 485

Query: 889  KVLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
              L IS EMVRK E KA  KL+ P+R+D+L++
Sbjct: 486  GNLNISREMVRKHEVKALMKLKHPARVDYLRR 517


>gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  203 bits (516), Expect = 1e-49
 Identities = 117/330 (35%), Positives = 187/330 (56%), Gaps = 2/330 (0%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L+++YS      SLDW  +    VL   EH WL +LMQPMK   + ++ L+  +GR+P 
Sbjct: 194  RLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQAKENLQKDLGRDPT 253

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            + E+A+A  +    VR+H++ GQAARNKLI+ NL+LVL+ +  Y Q+F+N         F
Sbjct: 254  EDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQDFANGP------RF 307

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++   S   +   +      
Sbjct: 308  QDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVE 367

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R+PT+EE+   + + PE++++V + +    ++   +   + E     
Sbjct: 368  IQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQEEFINGI 427

Query: 715  WIDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKV 894
               +G        P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  
Sbjct: 428  TDIDGVGGDHRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGN 483

Query: 895  LGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            L IS EMVRK E KA  KL+ P+R+D+L++
Sbjct: 484  LNISREMVRKHEVKALMKLKHPARVDYLRR 513


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score =  201 bits (511), Expect = 5e-49
 Identities = 117/330 (35%), Positives = 188/330 (56%), Gaps = 2/330 (0%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L+++YS      SLDW  +    VL  +EH WL +LMQPMK   + + +L+  +GREP 
Sbjct: 189  RLVRDYSASHDIVSLDWKKMKIPPVLPSTEHAWLFKLMQPMKALLQVKDELQKSLGREPR 248

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            + E+A  + +    V+R I+ G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F
Sbjct: 249  ETEIAGEINMSAAEVKRKIEIGRAARNKLIKHNLRLVLFVMNKYFQDFTNGP------KF 302

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +      
Sbjct: 303  QDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVE 362

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                        GR PT++E+   +++ PE++++V +      +++ ++   + E     
Sbjct: 363  IYKTKMELLFELGRLPTEDEVVERLKISPERYREVLRAAKPVFSLNSKHSVTQEEFINGI 422

Query: 715  WIDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKV 894
               +G        P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  
Sbjct: 423  TDVDGVGADNRRQPAILRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGN 478

Query: 895  LGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            L IS EMVRK E KA  KL+  +R+D+L+Q
Sbjct: 479  LNISREMVRKHEVKALMKLKHQARVDYLRQ 508


>ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, partial [Capsella rubella]
            gi|482556108|gb|EOA20300.1| hypothetical protein
            CARUB_v10000608mg, partial [Capsella rubella]
          Length = 557

 Score =  201 bits (510), Expect = 6e-49
 Identities = 117/329 (35%), Positives = 188/329 (57%), Gaps = 2/329 (0%)
 Frame = +1

Query: 4    LIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPND 183
            L+++YS+     SLDW  +    VL  +EH WL +LMQPMK   E + +L+  +GREP +
Sbjct: 236  LVRDYSVSNDILSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDELQKSLGREPRE 295

Query: 184  MEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEFS 357
             E+A  +++    V++ I+ G+AARNKLI+ NL+LVL+ +  Y Q F+N        +F 
Sbjct: 296  AEIAGEIKMTTGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFQEFTNGP------KFQ 349

Query: 358  DLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXX 537
            DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +       
Sbjct: 350  DLCQAGMKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEI 409

Query: 538  XXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWW 717
                       GR PT++E+   +++ PE++++V +      +++ ++   + E      
Sbjct: 410  YKAKMELLFELGRLPTEDEVIKRLKITPERYREVLRAAKPVFSLNSKHAVTQEEFINGIT 469

Query: 718  IDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVL 897
              +G        P   RL     +DD+L SL P+E  +I++RYG +GK +++L E A  L
Sbjct: 470  DVDGVGADNRRQPALLRLA----LDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNL 525

Query: 898  GISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
             IS EMVRK E KA  KL+  +R+D+L+Q
Sbjct: 526  NISREMVRKHEVKALMKLKHQARVDYLRQ 554


>ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 2 [Solanum
            lycopersicum]
          Length = 487

 Score =  200 bits (509), Expect = 8e-49
 Identities = 117/319 (36%), Positives = 179/319 (56%), Gaps = 4/319 (1%)
 Frame = +1

Query: 40   SLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPNDMEVAKALRLPLR 219
            SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +GREP D EVA+A  +   
Sbjct: 178  SLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQNDLGREPTDGEVAEATNMDAS 237

Query: 220  TVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEFSDLCNAGLQGLLV 393
             +R+ ++AG+AARNKLI+ NL+LVL+ +  Y Q+F+N         F DLC AG++GL+ 
Sbjct: 238  ELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANAS------RFQDLCQAGVKGLIT 291

Query: 394  ALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXXXXXXXXXSLNG 573
            A+DRF+P RK R STY  FWIRH + + +   S   +P  +                   
Sbjct: 292  AIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVEIQKAKLELLFELQ 351

Query: 574  RDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWIDNGSYPIK--E 747
            R PT +E+   +   PE++ +V K +    ++   N   + E      + NG   +   +
Sbjct: 352  RIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEE------LINGITDVDGVD 405

Query: 748  NDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLGISNEMVRKE 927
             D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A  L IS EMVRK 
Sbjct: 406  GDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKH 465

Query: 928  ENKAFSKLRDPSRIDFLKQ 984
            E KA  KL+ P+R+D++++
Sbjct: 466  EVKALMKLKHPTRVDYVRR 484


>ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thaliana]
            gi|75267675|sp|Q9ZNX9.1|SIGE_ARATH RecName: Full=RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial; Short=Sigma factor E;
            Short=Sigma-E; AltName: Full=RNA polymerase sigma factor
            sig5; Short=Atsig5; Short=Sigma factor 5; Flags:
            Precursor gi|4033838|emb|CAA77213.1| sigma-like factor
            [Arabidopsis thaliana] gi|4972299|dbj|BAA78109.1| RNA
            polymerase sigma subunit SigE [Arabidopsis thaliana]
            gi|10178160|dbj|BAB11572.1| sigma-like factor
            [Arabidopsis thaliana] gi|222423237|dbj|BAH19595.1|
            AT5G24120 [Arabidopsis thaliana]
            gi|332005876|gb|AED93259.1| RNA polymerase sigma factor 5
            [Arabidopsis thaliana]
          Length = 517

 Score =  200 bits (508), Expect = 1e-48
 Identities = 117/333 (35%), Positives = 189/333 (56%), Gaps = 5/333 (1%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L+++YS      SLDW  +    VL  +EH WL +LMQPMK   E +  L+  +GREP 
Sbjct: 195  RLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPR 254

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            + E+A  + +    V++ I+ G+AARNKLI+ NL+LVL+ +  Y   F+N        +F
Sbjct: 255  EAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGP------KF 308

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +      
Sbjct: 309  QDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVE 368

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                        GR PT++E+   +++ PE++++V +      +++ ++   + E     
Sbjct: 369  IYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEE----- 423

Query: 715  WIDNGSYPIK---ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRET 885
               NG   +     N+   P L ++  +DD+L SL P+E  +I++RYG +GK +++L E 
Sbjct: 424  -FINGITDVDGVGANNSRQPAL-LRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 481

Query: 886  AKVLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            A  L IS EMVRK E KA  KL+  +R+D+L+Q
Sbjct: 482  AGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 514


>ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arabidopsis lyrata subsp.
            lyrata] gi|297320007|gb|EFH50429.1| hypothetical protein
            ARALYDRAFT_489269 [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  200 bits (508), Expect = 1e-48
 Identities = 117/333 (35%), Positives = 191/333 (57%), Gaps = 5/333 (1%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L+++YS      SLDW  +    VL  +EH WL +LMQPMK   E + +L+  +GREP 
Sbjct: 195  RLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDELQKSLGREPR 254

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            + E+A  + +    V++ I+ G+AARNKLI+ NL+LVL+ +  Y  +F+N        +F
Sbjct: 255  EAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHDFTNGP------KF 308

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +      
Sbjct: 309  QDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVE 368

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                        GR PT++E+   +++ PE++++V +      +++ ++   + E     
Sbjct: 369  IFKTKTELLFELGRLPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEE----- 423

Query: 715  WIDNGSYPIK---ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRET 885
               NG   +     N+   P L ++  +DD+L SL P+E  +I++RYG +GK +++L E 
Sbjct: 424  -FINGITDVDGVGANNSRQPAL-LRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 481

Query: 886  AKVLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            A  L IS EMVRK E KA  KL+  +R+D+L+Q
Sbjct: 482  AGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 514


>gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  199 bits (506), Expect = 2e-48
 Identities = 117/332 (35%), Positives = 188/332 (56%), Gaps = 4/332 (1%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L++EYS      SLDW  +    VL  SEH WL +LMQPMK   E ++ L+  +GREP 
Sbjct: 197  ELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQKDLGREPT 256

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            + E+A+A  + +  V++H++ G+AAR+KLI+ NL+LVL+ +  Y Q+F+N        +F
Sbjct: 257  NGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGP------KF 310

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P R  R STY  FWIRH + +++   S   +   +      
Sbjct: 311  QDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAE 370

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT++E+   + + PE++ +V + +    ++   +   + E     
Sbjct: 371  IQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHTTTQEE----- 425

Query: 715  WIDNGSYPIK--ENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETA 888
               NG   +   E D       ++  +DD+L SL P+E  +I++RYG +GK +++L E A
Sbjct: 426  -FINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA 484

Query: 889  KVLGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
              L IS EMVRK E KA  KL+ P+R+D+L++
Sbjct: 485  GNLNISREMVRKHEVKALMKLKHPARVDYLRR 516


>ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 507

 Score =  199 bits (506), Expect = 2e-48
 Identities = 120/328 (36%), Positives = 185/328 (56%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +LI+EYS+     S+DW  +    VL  SEH WL +LMQPMK   + ++ L+  + REP 
Sbjct: 185  ELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPA 244

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEVYRQNFSNKKLGNVTLEFSD 360
            D E+A A  + +  VR+ ID GQAARNKLI+ NL+LVL+ V  + F++   G     F D
Sbjct: 245  DGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLF-VINKYFTDFASGP---RFQD 300

Query: 361  LCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXX 540
            LC AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++   +   +P  +        
Sbjct: 301  LCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQ 360

Query: 541  XXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWI 720
                       R PT+EE+   + + PE++  V K +    +++  +   + E       
Sbjct: 361  KAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVD 420

Query: 721  DNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLG 900
            D+G        P   RL     +DD+L SL P+E  +I++R+G +GK +++L E A  L 
Sbjct: 421  DDGVNGDNRKQPALLRLA----LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN 476

Query: 901  ISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            IS EMVRK E KA  KL+  +R+D+L++
Sbjct: 477  ISREMVRKHEVKALMKLKHSARLDYLRR 504


>ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Glycine max]
          Length = 509

 Score =  199 bits (506), Expect = 2e-48
 Identities = 119/328 (36%), Positives = 184/328 (56%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +LI+EYS+     S+DW  +    VL  SEH WL +LMQPMK   + ++ L+  + REP 
Sbjct: 187  ELIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQKELAREPA 246

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEVYRQNFSNKKLGNVTLEFSD 360
            D E+A A  + +  V++ ID GQAARNKLI+ NL+LVL+ V  + F++   G     F D
Sbjct: 247  DGELADATNMSITQVKKAIDVGQAARNKLIKHNLRLVLF-VINKYFTDFASGP---RFQD 302

Query: 361  LCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXX 540
            LC AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++   S   +P  +        
Sbjct: 303  LCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFIRVPFGLESVRAEIQ 362

Query: 541  XXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWI 720
                       R PT+EE+   + + PE++  + K +    +++  +   + E       
Sbjct: 363  KAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKASKSILSLNSRHTTTQEEFINGIVD 422

Query: 721  DNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLG 900
            D+G        P   RL     +DD+L SL P+E  +I++R+G +GK +++L E A  L 
Sbjct: 423  DDGVNGDNRKQPALLRLA----LDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLN 478

Query: 901  ISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            IS EMVRK E KA  KL   +R+D+L++
Sbjct: 479  ISREMVRKHEVKALMKLNHSARLDYLRR 506


>ref|XP_004502613.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cicer arietinum]
          Length = 513

 Score =  199 bits (505), Expect = 2e-48
 Identities = 115/330 (34%), Positives = 192/330 (58%), Gaps = 2/330 (0%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +L++EYS+P    SLDW  +    VL  SEH +L +LMQPMK   + ++ L+  + REP 
Sbjct: 191  ELLREYSVPADFVSLDWKKMKIPPVLHSSEHAFLFKLMQPMKALHQVKEDLQKELAREPT 250

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEF 354
            + ++A A  +    V++ I+ G+AARNKLI+ NL+LVL+ +  Y  +F+N         F
Sbjct: 251  EDDIADATHMRTAQVKKAIEVGRAARNKLIKHNLRLVLFVINKYFSDFANGS------RF 304

Query: 355  SDLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXX 534
             DLC AG++GL+ A+DRF+P RK R STY+ FWIRH + +++   S   +P  +      
Sbjct: 305  QDLCQAGVKGLITAIDRFEPNRKFRLSTYSLFWIRHAIIRSMTLSSFSRVPFGLESVRAE 364

Query: 535  XXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSW 714
                         R PT+EE+   + + PE+++ V + +    ++   ++  + E  +  
Sbjct: 365  IRRAKLELTFELQRPPTEEEVIERVHISPERYRDVMRASKPLLSLHSRHLITQEEF-IDR 423

Query: 715  WIDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKV 894
             +D+G   +  ++   P L ++  +DD+L SL P+E  +I++R+G +GK +++L E A  
Sbjct: 424  VVDDGG--VDGDNRRQPAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASN 480

Query: 895  LGISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            L IS EMVRK E KA  KL+  +R+D+L++
Sbjct: 481  LNISREMVRKHEVKALMKLKHAARLDYLRR 510


>ref|XP_002333134.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  199 bits (505), Expect = 2e-48
 Identities = 114/329 (34%), Positives = 184/329 (55%), Gaps = 2/329 (0%)
 Frame = +1

Query: 4    LIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPND 183
            L++EYS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +G EP D
Sbjct: 193  LVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTD 252

Query: 184  MEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEFS 357
            +E+AKA+ + +  VR+ I  G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F 
Sbjct: 253  VELAKAINMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQDFAN------GTKFQ 306

Query: 358  DLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXX 537
            D C AG++GL+ A+DRF+P R+ R STY  FWIRH + +++   S   +   +       
Sbjct: 307  DFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEI 366

Query: 538  XXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWW 717
                        R P ++E+   +++ PE++ +V + +    ++   +   + E      
Sbjct: 367  QKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEE------ 420

Query: 718  IDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVL 897
               G   +   D       ++  +DD+L SL P+E  ++++RYG +GK +++L E A  L
Sbjct: 421  FIGGIADVDGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNL 480

Query: 898  GISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
             IS EMVRK E KA  KL+ P+R+D+L++
Sbjct: 481  NISREMVRKHEVKALMKLKHPTRVDYLRR 509


>ref|NP_001276145.1| RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
            [Glycine max] gi|382365034|dbj|BAM05478.1| sigma-like
            factor 5B [Glycine max]
          Length = 507

 Score =  198 bits (503), Expect = 4e-48
 Identities = 120/328 (36%), Positives = 184/328 (56%)
 Frame = +1

Query: 1    KLIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPN 180
            +LI+EYS+     S+DW  +    VL  SEH WL +LMQPMK   + ++ L+  + REP 
Sbjct: 185  ELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPMKALLQVKEDLQQELTREPA 244

Query: 181  DMEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEVYRQNFSNKKLGNVTLEFSD 360
            D E+A A  + +  VR+ ID GQAARNKLI+ NL+LVL+ V  + F++   G     F D
Sbjct: 245  DGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLF-VINKYFTDFASGP---RFQD 300

Query: 361  LCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXXX 540
            LC AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++   +   +P  +        
Sbjct: 301  LCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQ 360

Query: 541  XXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWWI 720
                       R PT+EE+   + + PE++  V K +    +++  +   + E       
Sbjct: 361  KAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLNSRHTTTQEEFINGIVD 420

Query: 721  DNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVLG 900
            D+G        P   RL     +DD+L SL P+E  +I+ R+G +GK +++L E A  L 
Sbjct: 421  DDGVNGDNRKQPALLRLA----LDDVLDSLKPKESLVIRXRFGLDGKGDRTLGEIAGNLN 476

Query: 901  ISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
            IS EMVRK E KA  KL+  +R+D+L++
Sbjct: 477  ISREMVRKHEVKALMKLKHSARLDYLRR 504


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  197 bits (502), Expect = 5e-48
 Identities = 114/329 (34%), Positives = 183/329 (55%), Gaps = 2/329 (0%)
 Frame = +1

Query: 4    LIKEYSMPWFRRSLDWNDVPKSEVLEPSEHDWLTRLMQPMKFYEEQRKKLKGIMGREPND 183
            L++EYS      SLDW  +    VL  SEH WL +LMQPMK   + ++ L+  +G EP D
Sbjct: 193  LVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTD 252

Query: 184  MEVAKALRLPLRTVRRHIDAGQAARNKLIQKNLKLVLWEV--YRQNFSNKKLGNVTLEFS 357
            +E+AKA  + +  VR+ I  G+AARNKLI+ NL+LVL+ +  Y Q+F+N        +F 
Sbjct: 253  VELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQDFAN------GTKFQ 306

Query: 358  DLCNAGLQGLLVALDRFKPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXXXX 537
            D C AG++GL+ A+DRF+P R+ R STY  FWIRH + +++   S   +   +       
Sbjct: 307  DFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEI 366

Query: 538  XXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTTVDLENIADENEGPLSWW 717
                        R P ++E+   +++ PE++ +V + +    ++   +   + E      
Sbjct: 367  QKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEE------ 420

Query: 718  IDNGSYPIKENDPMDPRLEVKHFVDDLLASLTPREGRIIKERYGFNGKEEKSLRETAKVL 897
               G   +   D       ++  +DD+L SL P+E  ++++RYG +GK +++L E A  L
Sbjct: 421  FIGGIADVDGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNL 480

Query: 898  GISNEMVRKEENKAFSKLRDPSRIDFLKQ 984
             IS EMVRK E KA  KL+ P+R+D+L++
Sbjct: 481  NISREMVRKHEVKALMKLKHPTRVDYLRR 509