BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00007285
         (903 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008082186.1| photosystem I assembly protein ycf3 (chlorop...   161   3e-37
ref|YP_001152170.1| ORF82b [Pinus koraiensis] gi|145048798|gb|AB...   161   4e-37
ref|YP_002519946.1| photosystem I assembly protein Ycf3 (chlorop...   160   8e-37
gb|AEQ94199.1| photosystem I assembly protein Ycf3, partial [Cat...   159   1e-36
dbj|BAH11237.1| photosystem I assembly protein Ycf3 (chloroplast...   155   2e-35
ref|YP_001876568.1| hypothetical chloroplast RF3 [Welwitschia mi...   155   2e-35
ref|XP_006431325.1| hypothetical protein CICLE_v10030468mg [Citr...   155   3e-35
dbj|BAN16920.1| photosystem I assembly protein Ycf3 (chloroplast...   155   3e-35
ref|YP_002519791.1| photosystem I assembly protein Ycf3 [Gnetum ...   155   3e-35
ref|YP_398330.1| photosystem I assembly protein Ycf3 [Lactuca sa...   154   3e-35
gb|AEQ94200.1| photosystem I assembly protein Ycf3, partial [Fra...   154   3e-35
sp|P12202.2|YCF3_MARPO RecName: Full=Photosystem I assembly prot...   154   4e-35
ref|NP_904201.1| photosystem I assembly protein Ycf3 [Physcomitr...   154   4e-35
ref|YP_007026140.1| hypothetical chloroplast RF3 (chloroplast) [...   154   4e-35
ref|YP_004376512.1| hypothetical chloroplast RF34 [Ptilidium pul...   154   4e-35
ref|YP_007474795.1| hypothetical chloroplast RF3 (chloroplast) [...   154   6e-35
ref|YP_008965031.1| photosystem I assembly protein Ycf3 (chlorop...   154   6e-35
dbj|BAK86748.1| photosystem I assembly protein Ycf3 (chloroplast...   154   6e-35
ref|YP_635723.1| photosystem I assembly protein Ycf3 [Chara vulg...   153   7e-35
ref|YP_008082854.1| hypothetical chloroplast RF34 (chloroplast) ...   153   1e-34

>ref|YP_008082186.1| photosystem I assembly protein ycf3 (chloroplast) [Gnetum montanum]
           gi|490345011|gb|AGL11031.1| photosystem I assembly
           protein ycf3 (chloroplast) [Gnetum montanum]
          Length = 82

 Score =  161 bits (408), Expect = 3e-37
 Identities = 77/80 (96%), Positives = 78/80 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN
Sbjct: 1   MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 60

Query: 183 PTLPQAFNNTALICHYVRLS 242
           P LPQA NNTALICHYVRLS
Sbjct: 61  PILPQALNNTALICHYVRLS 80


>ref|YP_001152170.1| ORF82b [Pinus koraiensis] gi|145048798|gb|ABP35416.1| ORF82b [Pinus
           koraiensis]
          Length = 82

 Score =  161 bits (407), Expect = 4e-37
 Identities = 77/81 (95%), Positives = 78/81 (96%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE DPYDRSYILYNIGLVHTSNGEH KALEYYFQALERN
Sbjct: 1   MSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERN 60

Query: 183 PTLPQAFNNTALICHYVRLSV 245
           P+LPQA NNTALICHYVRLSV
Sbjct: 61  PSLPQALNNTALICHYVRLSV 81


>ref|YP_002519946.1| photosystem I assembly protein Ycf3 (chloroplast) [Ephedra
           equisetina] gi|220983547|dbj|BAH11314.1| photosystem I
           assembly protein Ycf3 (chloroplast) [Ephedra equisetina]
          Length = 168

 Score =  160 bits (404), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           PTLPQAFNNTALICHY
Sbjct: 103 PTLPQAFNNTALICHY 118


>gb|AEQ94199.1| photosystem I assembly protein Ycf3, partial [Catalpa bungei]
          Length = 80

 Score =  159 bits (403), Expect = 1e-36
 Identities = 76/80 (95%), Positives = 77/80 (96%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE DPYDRSYILYNIGLVHTSNGEH KALEYYFQALERN
Sbjct: 1   MSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERN 60

Query: 183 PTLPQAFNNTALICHYVRLS 242
           P+LPQA NNTALICHYVRLS
Sbjct: 61  PSLPQALNNTALICHYVRLS 80


>dbj|BAH11237.1| photosystem I assembly protein Ycf3 (chloroplast) [Welwitschia
           mirabilis]
          Length = 169

 Score =  155 bits (392), Expect = 2e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN
Sbjct: 44  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 103

Query: 183 PTLPQAFNNTALICHY 230
           P LPQA NNTALICHY
Sbjct: 104 PALPQALNNTALICHY 119


>ref|YP_001876568.1| hypothetical chloroplast RF3 [Welwitschia mirabilis]
           gi|163311623|gb|ABY26781.1| hypothetical chloroplast RF3
           [Welwitschia mirabilis]
          Length = 168

 Score =  155 bits (392), Expect = 2e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P LPQA NNTALICHY
Sbjct: 103 PALPQALNNTALICHY 118


>ref|XP_006431325.1| hypothetical protein CICLE_v10030468mg [Citrus clementina]
           gi|567885976|ref|XP_006435531.1| hypothetical protein
           CICLE_v10010876mg [Citrus clementina]
           gi|567906098|ref|XP_006445528.1| hypothetical protein
           CICLE_v10004110mg [Citrus clementina]
           gi|557533397|gb|ESR44565.1| hypothetical protein
           CICLE_v10030468mg [Citrus clementina]
           gi|557537685|gb|ESR48771.1| hypothetical protein
           CICLE_v10010876mg [Citrus clementina]
           gi|557547808|gb|ESR58768.1| hypothetical protein
           CICLE_v10004110mg [Citrus clementina]
          Length = 82

 Score =  155 bits (391), Expect = 3e-35
 Identities = 72/81 (88%), Positives = 77/81 (95%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEG YAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEH KALEYYF+ALERN
Sbjct: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60

Query: 183 PTLPQAFNNTALICHYVRLSV 245
           P LPQAFNN A+ICHYVRLS+
Sbjct: 61  PFLPQAFNNMAVICHYVRLSL 81


>dbj|BAN16920.1| photosystem I assembly protein Ycf3 (chloroplast) [Gnetum ula]
          Length = 168

 Score =  155 bits (391), Expect = 3e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P LPQA NNTALICHY
Sbjct: 103 PILPQALNNTALICHY 118


>ref|YP_002519791.1| photosystem I assembly protein Ycf3 [Gnetum parvifolium]
           gi|172048623|sp|A6BM62.1|YCF3_GNEPA RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|149941480|dbj|BAF64907.1| photosystem I assembly
           protein Ycf3 [Gnetum parvifolium]
           gi|220983534|dbj|BAH11302.1| photosystem I assembly
           protein Ycf3 (chloroplast) [Gnetum parvifolium]
          Length = 168

 Score =  155 bits (391), Expect = 3e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P LPQA NNTALICHY
Sbjct: 103 PILPQALNNTALICHY 118


>ref|YP_398330.1| photosystem I assembly protein Ycf3 [Lactuca sativa]
           gi|297840977|ref|XP_002888370.1| photosystem I assembly
           protein Ycf3 [Arabidopsis lyrata subsp. lyrata]
           gi|78675169|dbj|BAE47595.1| photosystem I assembly
           protein ycf3 [Lactuca sativa]
           gi|255631288|gb|ACU16011.1| unknown [Glycine max]
           gi|297334211|gb|EFH64629.1| photosystem I assembly
           protein Ycf3 [Arabidopsis lyrata subsp. lyrata]
           gi|225200|prf||1211235AE ORF 82
          Length = 82

 Score =  154 bits (390), Expect = 3e-35
 Identities = 72/80 (90%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEG YAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEH KALEYYF+ALERN
Sbjct: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60

Query: 183 PTLPQAFNNTALICHYVRLS 242
           P LPQAFNN A+ICHYVRLS
Sbjct: 61  PFLPQAFNNMAVICHYVRLS 80


>gb|AEQ94200.1| photosystem I assembly protein Ycf3, partial [Fraxinus chinensis]
          Length = 80

 Score =  154 bits (390), Expect = 3e-35
 Identities = 72/80 (90%), Positives = 76/80 (95%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEG YAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEH KALEYYF+ALERN
Sbjct: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60

Query: 183 PTLPQAFNNTALICHYVRLS 242
           P LPQAFNN A+ICHYVRLS
Sbjct: 61  PFLPQAFNNMAVICHYVRLS 80


>sp|P12202.2|YCF3_MARPO RecName: Full=Photosystem I assembly protein Ycf3
          Length = 167

 Score =  154 bits (389), Expect = 4e-35
 Identities = 71/76 (93%), Positives = 75/76 (98%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQAFNN A+ICHY
Sbjct: 103 PSLPQAFNNMAVICHY 118


>ref|NP_904201.1| photosystem I assembly protein Ycf3 [Physcomitrella patens]
           gi|51316665|sp|Q6YXP2.1|YCF3_PHYPA RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|34494784|dbj|BAC85051.1| hypothetical protein
           [Physcomitrella patens]
          Length = 168

 Score =  154 bits (389), Expect = 4e-35
 Identities = 71/76 (93%), Positives = 75/76 (98%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQAFNN A+ICHY
Sbjct: 103 PSLPQAFNNMAVICHY 118


>ref|YP_007026140.1| hypothetical chloroplast RF3 (chloroplast) [Pellia endiviifolia]
           gi|408773103|gb|AFU88850.1| hypothetical chloroplast RF3
           (chloroplast) [Pellia endiviifolia]
          Length = 167

 Score =  154 bits (389), Expect = 4e-35
 Identities = 71/76 (93%), Positives = 75/76 (98%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQAFNN A+ICHY
Sbjct: 103 PSLPQAFNNMAVICHY 118


>ref|YP_004376512.1| hypothetical chloroplast RF34 [Ptilidium pulcherrimum]
           gi|302024760|gb|ADK89606.1| hypothetical chloroplast
           RF34 [Ptilidium pulcherrimum]
          Length = 167

 Score =  154 bits (389), Expect = 4e-35
 Identities = 71/76 (93%), Positives = 75/76 (98%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQAFNN A+ICHY
Sbjct: 103 PSLPQAFNNMAVICHY 118


>ref|YP_007474795.1| hypothetical chloroplast RF3 (chloroplast) [Taxus mairei]
           gi|372863273|gb|AEX99344.1| hypothetical chloroplast RF3
           (chloroplast) [Taxus mairei] gi|372863350|gb|AEX99420.1|
           hypothetical chloroplast RF3 (chloroplast) [Taxus
           mairei] gi|372863514|gb|AEX99582.1| hypothetical
           chloroplast RF3 (chloroplast) [Taxus mairei]
          Length = 170

 Score =  154 bits (388), Expect = 6e-35
 Identities = 71/76 (93%), Positives = 74/76 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEH KALEYYFQALERN
Sbjct: 44  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 103

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQA NNTALICHY
Sbjct: 104 PSLPQALNNTALICHY 119


>ref|YP_008965031.1| photosystem I assembly protein Ycf3 (chloroplast) [Agathis dammara]
           gi|347977308|dbj|BAK86771.1| photosystem I assembly
           protein Ycf3 (chloroplast) [Agathis dammara]
           gi|563317615|dbj|BAO19715.1| photosystem I assembly
           protein Ycf3 (chloroplast) [Agathis dammara]
          Length = 169

 Score =  154 bits (388), Expect = 6e-35
 Identities = 71/76 (93%), Positives = 74/76 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEH KALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQA NNTALICHY
Sbjct: 103 PSLPQALNNTALICHY 118


>dbj|BAK86748.1| photosystem I assembly protein Ycf3 (chloroplast) [Sciadopitys
           verticillata]
          Length = 169

 Score =  154 bits (388), Expect = 6e-35
 Identities = 71/76 (93%), Positives = 74/76 (97%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEH KALEYYFQALERN
Sbjct: 43  MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQA NNTALICHY
Sbjct: 103 PSLPQALNNTALICHY 118


>ref|YP_635723.1| photosystem I assembly protein Ycf3 [Chara vulgaris]
           gi|122237374|sp|Q1ACM4.1|YCF3_CHAVU RecName:
           Full=Photosystem I assembly protein Ycf3
           gi|77157856|gb|ABA61897.1| hypothetical protein RF3
           [Chara vulgaris]
          Length = 167

 Score =  153 bits (387), Expect = 7e-35
 Identities = 70/76 (92%), Positives = 75/76 (98%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQ+EGEYAEALQNYYEAMRLE+DPYDRSYILYNIGL+HTSNGEHAKALEYYFQALERN
Sbjct: 43  MSAQAEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERN 102

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQAFNN A+ICHY
Sbjct: 103 PSLPQAFNNVAVICHY 118


>ref|YP_008082854.1| hypothetical chloroplast RF34 (chloroplast) [Picea abies]
           gi|502524888|emb|CCW23139.1| hypothetical chloroplast
           RF34 (chloroplast) [Picea abies]
          Length = 170

 Score =  153 bits (386), Expect = 1e-34
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = +3

Query: 3   MSAQSEGEYAEALQNYYEAMRLEVDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERN 182
           MSAQSEGEYAEALQNYYEAMRLE DPYDRSYILYNIGLVHTSNGEH KALEYYFQALERN
Sbjct: 44  MSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERN 103

Query: 183 PTLPQAFNNTALICHY 230
           P+LPQA NNTALICHY
Sbjct: 104 PSLPQALNNTALICHY 119