BLASTX nr result
ID: Ephedra28_contig00007162
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00007162
(3300 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ... 1011 0.0
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S... 1009 0.0
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p... 1008 0.0
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays] 1005 0.0
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S... 1004 0.0
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami... 1001 0.0
ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [A... 989 0.0
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g... 988 0.0
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group] 988 0.0
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub... 984 0.0
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub... 983 0.0
gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticu... 976 0.0
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group] 973 0.0
emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group] 972 0.0
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 964 0.0
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 964 0.0
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a... 962 0.0
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub... 961 0.0
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr... 958 0.0
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a... 958 0.0
>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
gi|283443696|gb|ADB19857.1| required to maintain
repression 7/RNA polymerase D second largest subunit [Zea
mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
RNA polymerase subunit family protein [Zea mays]
Length = 1229
Score = 1011 bits (2614), Expect = 0.0
Identities = 504/998 (50%), Positives = 678/998 (67%), Gaps = 19/998 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF++KG EKVFIAQE+RC R+W+ ++P W + R ++ +KL E ++
Sbjct: 256 GGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLVESTRS 310
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ SE I +SF + T+PV LLF+ALGISSD E+ MI D +
Sbjct: 311 ED---------FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINT 361
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
I ++I +++ +DFR + +Y+D+ +K++++P S ++ + LFP I G R KA+
Sbjct: 362 ISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKAL 421
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++ LR K+++KAIQ+DL
Sbjct: 422 FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDL 481
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
+ ++L+ +E YID+S++TNGL RAFSTG+W HP A +C+G+VA++++ NPLQ++S++
Sbjct: 482 NSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDL 541
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS + PLI
Sbjct: 542 RKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLI 600
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E G+ KL+D+ M K+F+NG +G C N S V ++R MRR IDP VEI
Sbjct: 601 ESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEI 660
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D E+R+F DAGR+LRPLLVVEN K K F L++
Sbjct: 661 KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIG 714
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLY 1623
D Q A G+ L ++ +G +THCELDPSFLL L+ +IPFAN N A R LY
Sbjct: 715 VEEEEDIQCAWGIRHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLY 771
Query: 1624 QSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL--------------SK 1761
QSEKHS+QAIG+ TT+ +R DT H+L YPQ+PLF+T+ CL ++
Sbjct: 772 QSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFAR 831
Query: 1762 PQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSS 1941
P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + ++ E +
Sbjct: 832 PEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKL 891
Query: 1942 RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKG 2121
+ +DFGK ++D LDDDGLP++ + L + D++IGKV D S+KLKHTEKG
Sbjct: 892 KEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKG 949
Query: 2122 RVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIV 2301
V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIV
Sbjct: 950 MVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIV 1009
Query: 2302 PDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQW 2481
PD++INPHAFP+RQTPGQL E TPF +V+ + E+LH+ GY +W
Sbjct: 1010 PDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRW 1069
Query: 2482 GMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGG 2661
G E + NGRTG +Q +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GG
Sbjct: 1070 GSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1129
Query: 2662 VKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPH 2826
VKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC C+ VA VV+ + +RGP+
Sbjct: 1130 VKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPY 1189
Query: 2827 CNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FCK+++++V++NVPY KLLYQELF+MGICLKFET+
Sbjct: 1190 CGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQ 1227
>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
gi|241938382|gb|EES11527.1| hypothetical protein
SORBIDRAFT_06g030300 [Sorghum bicolor]
Length = 1239
Score = 1009 bits (2608), Expect = 0.0
Identities = 505/998 (50%), Positives = 677/998 (67%), Gaps = 19/998 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF++KG EKVFIAQE+RC R+WV ++P WM + R ++ +KL E ++
Sbjct: 266 GGYFLVKGMEKVFIAQEQRCLKRLWVSDRPFWMISFMHEIKRR-----RIYIKLVESTRS 320
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ S I +SF + T+PV LLF+ALGISSD E +I D +
Sbjct: 321 ED---------FSGSKVISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINT 371
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
I ++I +++ K FR + +Y+D+ +K++++P S ++ + LFP I G R KA
Sbjct: 372 ISATIKESDELCKGFRKSDKARQYVDELVKSSRFPPAESFDDYVARFLFPDINGNRNKAF 431
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++ LR L ++++KAIQ+DL
Sbjct: 432 FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMVKAIQRDL 491
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
+ ++L+ +E YID+S++TNGL RAFSTG+W HP A +C+G+VA++++ NPLQ++S++
Sbjct: 492 NNDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDL 551
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS + PLI
Sbjct: 552 RKTRQRVAYAGKAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVGQ-PLI 610
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E G+ KL+D+ M K+F+NG +G C + S V ++R MRR IDP VEI
Sbjct: 611 ESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMIDPQVEI 670
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D KE+R+F DAGR+LRPLLVVEN K K F L++
Sbjct: 671 KRDKHHKEVRVFSDAGRILRPLLVVENLNKIRKP------KGRSFSFQELMQQEIIEFIG 724
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLY 1623
D Q A G+ L ++ +G +THCELDPSFL+ L+ +IPFAN N A R LY
Sbjct: 725 VEEEEDIQCAWGIRHLFES---EGAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLY 781
Query: 1624 QSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL--------------SK 1761
QSEKHS+QAIG+ TT+ +R DT H+L YPQ+PLF+T+ CL ++
Sbjct: 782 QSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTAFGRKDDYTR 841
Query: 1762 PQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSS 1941
P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + ++ E +
Sbjct: 842 PEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKTDVENKDGTKRLKL 901
Query: 1942 RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKG 2121
+ +DFGK ++D LDDDGLP+I + L + D++IGKV D S+KLKHTEKG
Sbjct: 902 KEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKG 959
Query: 2122 RVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIV 2301
V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIV
Sbjct: 960 MVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIV 1019
Query: 2302 PDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQW 2481
PD++INPHAFP+RQTPGQL E TPF +V+ + E+LHK GY +W
Sbjct: 1020 PDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRW 1079
Query: 2482 GMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGG 2661
G E + NGRTG +Q +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GG
Sbjct: 1080 GAENVLNGRTGERMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1139
Query: 2662 VKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPH 2826
VKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC C+ VA VV+ + +RGP+
Sbjct: 1140 VKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPY 1199
Query: 2827 CNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FCK+++++V++NVPY KLLYQELF+MGICLKF+TE
Sbjct: 1200 CGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFDTE 1237
>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
largest subunit 2-2 [Zea mays]
Length = 1229
Score = 1008 bits (2606), Expect = 0.0
Identities = 503/998 (50%), Positives = 677/998 (67%), Gaps = 19/998 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF++KG EKVFIAQE+RC R+W+ ++P W + R ++ +KL E ++
Sbjct: 256 GGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLVESTRS 310
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ SE I +SF + T+PV LLF+ALGISSD E+ MI D +
Sbjct: 311 ED---------FSESKIITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINT 361
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
I ++I +++ +DFR + +Y+D+ +K++++P S ++ + LFP I G R KA+
Sbjct: 362 ISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKAL 421
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++ LR K+++KAIQ+DL
Sbjct: 422 FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDL 481
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
+ ++L+ +E YID+S++TNGL RAFSTG+W HP A +C+G+VA++++ NPLQ++S++
Sbjct: 482 NSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDL 541
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V YA K GDARYPNPSYW ++CF+STPDGENCGLVKNLAVT++VS + PLI
Sbjct: 542 RKTRQRVAYAGKAGDARYPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLI 600
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E G+ KL+D+ M K+F+NG +G C N S V ++R MRR IDP VEI
Sbjct: 601 ESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEI 660
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D E+R+F DAGR+LRPLLVVEN K K F L++
Sbjct: 661 KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIG 714
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLY 1623
D Q A G+ L ++ +G +THCELDPSFLL L+ +IPFAN N A R LY
Sbjct: 715 VEEEEDIQCAWGIRHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLY 771
Query: 1624 QSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL--------------SK 1761
QSEKHS+QAIG+ TT+ +R DT H+L YPQ+PLF+T+ CL ++
Sbjct: 772 QSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFAR 831
Query: 1762 PQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSS 1941
P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + ++ E +
Sbjct: 832 PEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKL 891
Query: 1942 RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKG 2121
+ +DFGK ++D LDDDGLP++ + L + D++IGKV D S+KLKHTEKG
Sbjct: 892 KEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKG 949
Query: 2122 RVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIV 2301
V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIV
Sbjct: 950 MVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIV 1009
Query: 2302 PDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQW 2481
PD++INPHAFP+RQTPGQL E TPF +V+ + E+LH+ GY +W
Sbjct: 1010 PDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRW 1069
Query: 2482 GMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGG 2661
G E + NGRTG +Q +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GG
Sbjct: 1070 GSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1129
Query: 2662 VKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPH 2826
VKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC C+ VA VV+ + +RGP+
Sbjct: 1130 VKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPY 1189
Query: 2827 CNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FCK+++++V++NVPY KLLYQELF+MGICLKFET+
Sbjct: 1190 CGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQ 1227
>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
Length = 1170
Score = 1005 bits (2598), Expect = 0.0
Identities = 502/998 (50%), Positives = 675/998 (67%), Gaps = 19/998 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF++KG EKVFIAQE+RC R+W+ ++P W + R ++ +KL E ++
Sbjct: 197 GGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRR-----RIYIKLVESTRS 251
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ SE I +SF + T+PV L +ALGISSD E+ MI D +
Sbjct: 252 ED---------FSESKIITISFLYATMPVWLXXFALGISSDKEVFDMIXMQDCDASVINT 302
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
I ++I +++ +DFR + +Y+D+ +K++++P S ++ + LFP I G R KA+
Sbjct: 303 ISATIKESDKLCEDFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKAL 362
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++ LR K+++KAIQ+DL
Sbjct: 363 FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDL 422
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
+ ++L+ +E YID+S++TNGL RAFSTG+W HP A +C+G+VA++++ NPLQ++S++
Sbjct: 423 NSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDL 482
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS + PLI
Sbjct: 483 RKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQ-PLI 541
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E G+ KL+D+ M K+F+NG +G C N S V ++R MRR IDP VEI
Sbjct: 542 ESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEI 601
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D E+R+F DAGR+LRPLLVVEN K K F L++
Sbjct: 602 KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRKP------KGRSFSFHELMQQEIIEFIG 655
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLY 1623
D Q A G+ L ++ +G +THCELDPSFLL L+ +IPFAN N A R LY
Sbjct: 656 VEEEEDIQCAWGIRHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLY 712
Query: 1624 QSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL--------------SK 1761
QSEKHS+QAIG+ TT+ +R DT H+L YPQ+PLF+T+ CL ++
Sbjct: 713 QSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFAR 772
Query: 1762 PQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSS 1941
P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + ++ E +
Sbjct: 773 PEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKL 832
Query: 1942 RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKG 2121
+ +DFGK + D LDDDGLP++ + L + D++IGKV D S+KLKHTEKG
Sbjct: 833 KEKIDFGKTESKRGRXDNLDDDGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKG 890
Query: 2122 RVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIV 2301
V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIV
Sbjct: 891 MVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIV 950
Query: 2302 PDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQW 2481
PD++INPHAFP+RQTPGQL E TPF +V+ + E+LH+ GY +W
Sbjct: 951 PDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRW 1010
Query: 2482 GMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGG 2661
G E + NGRTG +Q +F+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GG
Sbjct: 1011 GSENVLNGRTGERVQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1070
Query: 2662 VKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPH 2826
VKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC C+ VA VV+ + +RGP+
Sbjct: 1071 VKFGEMERDCLLAHGSAANLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPY 1130
Query: 2827 CNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FCK+++++V++NVPY KLLYQELF+MGICLKFET+
Sbjct: 1131 CGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETQ 1168
>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
gi|241922081|gb|EER95225.1| hypothetical protein
SORBIDRAFT_01g042100 [Sorghum bicolor]
Length = 1228
Score = 1004 bits (2595), Expect = 0.0
Identities = 504/998 (50%), Positives = 677/998 (67%), Gaps = 19/998 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF++KG EKVFIAQE RC R+W+ ++P WM + R ++ +KL E ++
Sbjct: 255 GGYFLVKGMEKVFIAQELRCLKRLWIIDRPCWMISFMSEMKRR-----RIYIKLVESTRS 309
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ S I +SF + T+PV LLF+ALGISSD E +I D +
Sbjct: 310 ED---------FSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINT 360
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
I ++I +++ + FR + +Y+D+ +K++++P S ++ + LFP I G R KA+
Sbjct: 361 ISATIKESDELCEGFRKSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKAL 420
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++ LR K+++KAIQ+DL
Sbjct: 421 FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMVKAIQRDL 480
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
+ ++L+ +E YID+S++TNGL+RAFSTG+W HP A +C+G+VA++++ NPLQ++S++
Sbjct: 481 NSDRELQDLERYIDASIVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDL 540
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS + PLI
Sbjct: 541 RKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQ-PLI 599
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E G+ KL+D+ M K+F+NG +G C + S V ++R MRR IDP VEI
Sbjct: 600 ESFISCGMSKLNDIPTEHIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQVEI 659
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D KE+R+F DAGR+LRPLLVVEN + K K F L++
Sbjct: 660 KRDKHHKEVRVFSDAGRILRPLLVVENLKKIRKP------KGRSFSFQELMQQEIIEFIG 713
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLY 1623
D Q A G+ L ++ +G +THCELDPSFLL L+ +IPFAN N A R LY
Sbjct: 714 VEEEEDIQCAWGIRHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLY 770
Query: 1624 QSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCLSK-------------- 1761
QSEKHS+QAIG+ TT+ +R DT H+L YPQ+PLF+T+ CL +
Sbjct: 771 QSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMR 830
Query: 1762 PQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSS 1941
P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + ++ E +
Sbjct: 831 PEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKL 890
Query: 1942 RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKG 2121
+ +DFGK ++D LDDDGLP+I + L + D++IGKV D S+KLKHTEKG
Sbjct: 891 KEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKG 948
Query: 2122 RVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIV 2301
V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT +GIV
Sbjct: 949 MVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIV 1008
Query: 2302 PDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQW 2481
PD++INPHAFP+RQTPGQL E TPF +V+ + E+LH+ GY +W
Sbjct: 1009 PDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHRAGYSRW 1068
Query: 2482 GMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGG 2661
G E + NGRTG +Q IF+GPTFYQRLIHM+EDK+K+RN GPVHPLTRQPV DRKR GG
Sbjct: 1069 GTENVLNGRTGERMQSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1128
Query: 2662 VKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPH 2826
VKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC C+ VA VV+ + +RGP+
Sbjct: 1129 VKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPY 1188
Query: 2827 CNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FCK+++++V++NVPY KLLYQELF+MGICLKF+TE
Sbjct: 1189 CGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFDTE 1226
>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 2163
Score = 1001 bits (2587), Expect = 0.0
Identities = 504/998 (50%), Positives = 675/998 (67%), Gaps = 19/998 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF++KG EKVFIAQE RC R+W+ ++P W + R ++ +KL E ++
Sbjct: 1190 GGYFLVKGMEKVFIAQELRCLRRLWISDRPCWTISFMSEMKRR-----RIYIKLVESTRS 1244
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ S I +SF + T+PV LLF+ALGISSD E +I D +
Sbjct: 1245 ED---------FSGSKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINT 1295
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
I ++I +++ FR + +Y+D+ +K++K+P S ++ + LFP I G R KA+
Sbjct: 1296 ISATIKESDELCGGFRKSDKARQYVDELVKSSKFPPVESFDDYIAKFLFPGISGNRNKAL 1355
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL ++ G+R+ +NKDD+RNKRL+L GELLGR+++ LR ++++KAIQ+DL
Sbjct: 1356 FLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRQAERRMVKAIQRDL 1415
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
+ ++L+ +E YID+S++TNGL RAFSTG+W HP A +C+G+VA++++ NPLQ++S++
Sbjct: 1416 NSDRELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDL 1475
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVTS+VS + PLI
Sbjct: 1476 RKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKVVQ-PLI 1534
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E G+ KL+D+ M K+F+NG LG C++ S V ++R MRR IDP VEI
Sbjct: 1535 ESFISCGMNKLNDIPTEHIQRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEI 1594
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D KE+R+F DAGR+LRPLLVVEN K K F L++
Sbjct: 1595 KRDKHYKEVRLFSDAGRILRPLLVVENLNKIRKP------KGRSFSFQELMQQEIIEFIG 1648
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLY 1623
D Q A G+ L ++ +G +THCELDPSF+L L+ +IPFAN N A R LY
Sbjct: 1649 VEEEEDIQCAWGIRHLFES---EGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLY 1705
Query: 1624 QSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL--------------SK 1761
QSEKHS+QAIG+ T++ ++R DT H+L YPQ+PLF+T+ CL ++
Sbjct: 1706 QSEKHSQQAIGYSTSNPRIRVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTR 1765
Query: 1762 PQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSS 1941
P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + ++ E +
Sbjct: 1766 PEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKL 1825
Query: 1942 RLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKG 2121
+ +DFGK ++D LDDDGLP+I + L + D++IGKV D S+KLKHTEKG
Sbjct: 1826 KEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKG 1883
Query: 2122 RVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIV 2301
V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT GIV
Sbjct: 1884 MVQKVLLSANDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIV 1943
Query: 2302 PDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQW 2481
PD++INPHAFP+RQTPGQL E TPF +V+ + E+LHK GY +W
Sbjct: 1944 PDIVINPHAFPTRQTPGQLLEAALGKGIACKGTMRYATPFTTASVDVIAEQLHKAGYSRW 2003
Query: 2482 GMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGG 2661
G E + NGRTG ++ +F+GPTFYQRLIHM+EDK+KYRN GPVHPLTRQPV DRKR GG
Sbjct: 2004 GAENVLNGRTGERMKSLVFMGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGG 2063
Query: 2662 VKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPH 2826
VKFGEMERDC+LAHG+ +NL ERLF LSDFS MHIC C+ VA VV+ + +RGP+
Sbjct: 2064 VKFGEMERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPY 2123
Query: 2827 CNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FCK+++++V++NVPY KLLYQELF+MGICLKFETE
Sbjct: 2124 CGFCKSSENIVRINVPYGAKLLYQELFSMGICLKFETE 2161
>ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [Amborella trichopoda]
gi|548831561|gb|ERM94369.1| hypothetical protein
AMTR_s00010p00249150 [Amborella trichopoda]
Length = 1221
Score = 989 bits (2556), Expect = 0.0
Identities = 509/1006 (50%), Positives = 673/1006 (66%), Gaps = 27/1006 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF++KG EK+FIAQE C R+WV P W +Y N K +V V++ E K
Sbjct: 232 GGYFLVKGAEKIFIAQENMCLRRLWVSKTPSWSVLYRHGNS----KQKRVDVRIVESQKG 287
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
S I + F + +VP+ ++F+ALG SD E+VQMI D +
Sbjct: 288 DT---------LSGGKVINIYFQYASVPIWIMFFALGALSDKEIVQMIDLDPSDTNLAYI 338
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
+LS+IY A+ + + FR ++ ++Y+D ++++AK+P SVEE +D+ LFP ++ +++KA+
Sbjct: 339 LLSTIYDADEKCEGFRQGKNSIEYLDREIQSAKFPPKESVEECIDSLLFPSLRERKQKAL 398
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL SY GRR+V+NKDD+RNKRL LA EL+ ++M ++ ++++KAIQ+DL
Sbjct: 399 YLGYMVKCLLLSYFGRRKVDNKDDFRNKRLGLAAELIEKEMLAHIKNAGRRMVKAIQRDL 458
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
S + LK +ECY D S++TNGLARAFSTG W HP + + +GVVA++K+ NPLQ ++ M
Sbjct: 459 SADRILKPIECYFDGSIVTNGLARAFSTGNWCHPFKVSERISGVVATLKRTNPLQTMAHM 518
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ RL VQY +G+ARYPNPSYWG+VCF+STPDGENCGLVKNLA T +VS N E PL+
Sbjct: 519 RQTRLQVQYTGNIGNARYPNPSYWGKVCFLSTPDGENCGLVKNLAATGLVSTNLRE-PLL 577
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
+ L + G+ KLD VS KVF+NGE +G+C + V ++RNMRR + I VE+
Sbjct: 578 DKLTRCGMDKLDRVSPPSLSGKDKVFLNGEWVGLCEDSSRFVSELRNMRRNKLIHHQVEV 637
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D Q E+RIF DAGR+LRPLL+VEN +LC+ Q++ F PF YLL R
Sbjct: 638 KRDQPQHEVRIFSDAGRILRPLLIVENNKLCVSLEQINEFIKKGCPFQYLLDKRIVEFIG 697
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLY 1623
D IA GV L + +THCELD SFLL L+ +IPFAN N+A R L+
Sbjct: 698 VEEEEDCLIAWGVKHLLSDEKNQPA-QKYTHCELDLSFLLGLSCGMIPFANHNMARRVLF 756
Query: 1624 QSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQNAIVAVN 1803
QSEKHS+QAIG +T++ R DT H L YPQKPLF+T+ +C+ P+ +NGQNAIVAVN
Sbjct: 757 QSEKHSQQAIGFFTSNPNNRVDTLSHRLYYPQKPLFKTMLSECIGIPEFHNGQNAIVAVN 816
Query: 1804 VHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLDFGKPSGSNL 1983
VH GYNQEDS+V NRAS+DRGMFR+ +R + ++ D++ + + FGKP
Sbjct: 817 VHEGYNQEDSIVMNRASLDRGMFRTEIHRSYKADIPVDDSVQRVKRKENEYFGKPINGFG 876
Query: 1984 KIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGK 2163
KID LDD+GLP+I + + GD++IG+ SD S+KLKHTEKG V +V+++ ND
Sbjct: 877 KIDSLDDEGLPYIGASMKEGDIIIGRYVDSASDR--SIKLKHTEKGIVQKVVLSAND-EN 933
Query: 2164 KYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQ 2343
K A V+LR++R P +GDKFSSMHGQKGVVGFIE QEN PFT+QGIVPD++INPHAFP+RQ
Sbjct: 934 KLAVVQLRQVRTPCLGDKFSSMHGQKGVVGFIEAQENFPFTRQGIVPDIVINPHAFPTRQ 993
Query: 2344 TPGQLFEC-----------------------XXXXXXXXXXXXXXXTPFRPMTVEYLTER 2454
T GQL EC TPF + + +T++
Sbjct: 994 TAGQLLECALGKGICCTREENVKDNPKDKSKTGRKKAETPERLKYATPFSTASFDDITDQ 1053
Query: 2455 LHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQP 2634
L + G+ +WG E++Y+GRTG + IFIGPTFYQRL+HMAEDKMK+RN GPVHPLTRQP
Sbjct: 1054 LQRYGFSRWGTERVYSGRTGEMQKSLIFIGPTFYQRLVHMAEDKMKFRNTGPVHPLTRQP 1113
Query: 2635 VHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPV----VL 2802
V DRKR GGVKFGEMERDC++AHGA +NL ERLF LSDFS M +C+KC +A V V
Sbjct: 1114 VADRKRFGGVKFGEMERDCLIAHGAAANLHERLFVLSDFSHMFVCTKCSNMANVTIRTVA 1173
Query: 2803 ENGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
RGP C FCK+A+ +VK+NVPY KLLYQELF+MGI L+FETE
Sbjct: 1174 NRRERGPFCRFCKSAEKIVKINVPYGAKLLYQELFSMGIVLRFETE 1219
>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
sativa Japonica Group]
Length = 1270
Score = 988 bits (2554), Expect = 0.0
Identities = 503/1023 (49%), Positives = 688/1023 (67%), Gaps = 44/1023 (4%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVY-TPSNDR--YLKKWDKVIVKLNED 174
GGYF+IKG EKVFIAQE++C TRIWV+++P WM + +P R Y+K D NED
Sbjct: 273 GGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSAN---NED 329
Query: 175 IKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREI 354
K I +SF + +P+ L+F+ALGISSD ++ +I D +
Sbjct: 330 ASGGKI--------------ISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACV 375
Query: 355 CEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQRE 534
I ++I +++ + FR + +Y+D+ +KN+K+P ++ + +LFP I G R
Sbjct: 376 INTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRN 435
Query: 535 KAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQ 714
KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+LAGELLGR+++ +R + ++KA+Q
Sbjct: 436 KALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQ 495
Query: 715 KDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVL 894
+DL+ +++L+ + Y+D+S+ITNGL RAFSTG+W HP +C G+VA++++ NPLQ++
Sbjct: 496 RDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMI 555
Query: 895 SEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEK 1074
S++R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT+ VS +
Sbjct: 556 SDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAP- 614
Query: 1075 PLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPL 1254
PLI+ G+ KL ++ + M K+F+NG+ +G C++P S V ++R MRR IDP
Sbjct: 615 PLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQ 674
Query: 1255 VEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXX 1434
VEIK+D Q+E+R+F DAGR+LRPLLVVEN +++ K F +L++
Sbjct: 675 VEIKRDKHQREVRVFSDAGRILRPLLVVENL------NKIRRPKGSSYSFQWLMQQEIIE 728
Query: 1435 XXXXXXXXDAQIACGVDIL----QKASITK---------------GLYPPFTHCELDPSF 1557
D + A G+ L ++A + K G +THCELD SF
Sbjct: 729 FIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSF 788
Query: 1558 LLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRT 1737
LL L+ +IPFAN N A R LYQSEKHS+QAIG+ TT+ +R DT H+L YPQ+PLF+T
Sbjct: 789 LLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 848
Query: 1738 LSYQCL-------------SKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRS 1878
+ C+ ++P+ +NGQNAIVAVNVH G+NQEDS+V NRAS++RGMFR+
Sbjct: 849 VIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRT 908
Query: 1879 MHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLYSGD 2046
H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L SGD
Sbjct: 909 EHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGD 967
Query: 2047 VLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSS 2226
++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSS
Sbjct: 968 IVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSS 1025
Query: 2227 MHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXX 2406
MHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQL E
Sbjct: 1026 MHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMR 1085
Query: 2407 XXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDK 2586
TPF + + +T++LHK G+ +WG E + NGRTG + IF+GPTFYQRLIHMAEDK
Sbjct: 1086 YATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDK 1145
Query: 2587 MKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHI 2766
+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+
Sbjct: 1146 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHV 1205
Query: 2767 CSKCQMVAPVVLE-----NGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKF 2931
C C+ VA V++ +RGP+C FC++++++V++NVPY KLLYQELF+MGICL+F
Sbjct: 1206 CQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRF 1265
Query: 2932 ETE 2940
ETE
Sbjct: 1266 ETE 1268
>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
Length = 1316
Score = 988 bits (2554), Expect = 0.0
Identities = 503/1023 (49%), Positives = 688/1023 (67%), Gaps = 44/1023 (4%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVY-TPSNDR--YLKKWDKVIVKLNED 174
GGYF+IKG EKVFIAQE++C TRIWV+++P WM + +P R Y+K D NED
Sbjct: 319 GGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSAN---NED 375
Query: 175 IKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREI 354
K I +SF + +P+ L+F+ALGISSD ++ +I D +
Sbjct: 376 ASGGKI--------------ISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACV 421
Query: 355 CEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQRE 534
I ++I +++ + FR + +Y+D+ +KN+K+P ++ + +LFP I G R
Sbjct: 422 INTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRN 481
Query: 535 KAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQ 714
KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL+LAGELLGR+++ +R + ++KA+Q
Sbjct: 482 KALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQ 541
Query: 715 KDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVL 894
+DL+ +++L+ + Y+D+S+ITNGL RAFSTG+W HP +C G+VA++++ NPLQ++
Sbjct: 542 RDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMI 601
Query: 895 SEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEK 1074
S++R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT+ VS +
Sbjct: 602 SDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAP- 660
Query: 1075 PLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPL 1254
PLI+ G+ KL ++ + M K+F+NG+ +G C++P S V ++R MRR IDP
Sbjct: 661 PLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQ 720
Query: 1255 VEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXX 1434
VEIK+D Q+E+R+F DAGR+LRPLLVVEN +++ K F +L++
Sbjct: 721 VEIKRDKHQREVRVFSDAGRILRPLLVVENL------NKIRRPKGSSYSFQWLMQQEIIE 774
Query: 1435 XXXXXXXXDAQIACGVDIL----QKASITK---------------GLYPPFTHCELDPSF 1557
D + A G+ L ++A + K G +THCELD SF
Sbjct: 775 FIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSF 834
Query: 1558 LLSLNASLIPFANRNLATRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRT 1737
LL L+ +IPFAN N A R LYQSEKHS+QAIG+ TT+ +R DT H+L YPQ+PLF+T
Sbjct: 835 LLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 894
Query: 1738 LSYQCL-------------SKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRS 1878
+ C+ ++P+ +NGQNAIVAVNVH G+NQEDS+V NRAS++RGMFR+
Sbjct: 895 VIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRT 954
Query: 1879 MHYRLFTSEAEYDENQPLNSSRLDL----DFGKPSGSNLKIDKLDDDGLPFISSDLYSGD 2046
H+R + +E E ++ P + RL + DFGK ++D LDDDGLP++ + L SGD
Sbjct: 955 EHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGD 1013
Query: 2047 VLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSS 2226
++IGKV D S+KLKHTEKG V +VL++ ND GK +A V LR++R P +GDKFSS
Sbjct: 1014 IVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSS 1071
Query: 2227 MHGQKGVVGFIEEQENMPFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXX 2406
MHGQKGVVGF+E QEN PFT QGIVPD++INPHAFP+RQTPGQL E
Sbjct: 1072 MHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMR 1131
Query: 2407 XXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDK 2586
TPF + + +T++LHK G+ +WG E + NGRTG + IF+GPTFYQRLIHMAEDK
Sbjct: 1132 YATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDK 1191
Query: 2587 MKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHI 2766
+K+RN GPVHPLTRQPV DRKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MH+
Sbjct: 1192 VKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHV 1251
Query: 2767 CSKCQMVAPVVLE-----NGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKF 2931
C C+ VA V++ +RGP+C FC++++++V++NVPY KLLYQELF+MGICL+F
Sbjct: 1252 CQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRF 1311
Query: 2932 ETE 2940
ETE
Sbjct: 1312 ETE 1314
>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 984 bits (2545), Expect = 0.0
Identities = 505/1002 (50%), Positives = 669/1002 (66%), Gaps = 23/1002 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDR---YLKKWDKVIVKLNED 174
GGYF+IKG EK+FIAQE+RC TRIWV ++P W Y R Y+K D N D
Sbjct: 238 GGYFLIKGMEKIFIAQEQRCLTRIWVADRPCWNVSYLSEMKRRRVYIKLIDSTT---NND 294
Query: 175 IKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREI 354
+ K I +SF + +P+ LLF+ALG+SSD E+ MI D +
Sbjct: 295 LNGAKI--------------ISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASV 340
Query: 355 CEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQRE 534
I ++I +++ + FR + KY+DD +K++K+P + + +LFP I G R
Sbjct: 341 INAISATIRESDELCEGFRQSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRN 400
Query: 535 KAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQ 714
KA LGYMV CLL ++ G+R+ +NKDD+RNKRLEL G+LLGR+++ LR + ++KA+Q
Sbjct: 401 KAFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQ 460
Query: 715 KDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVL 894
+DL+ +DL+ Y+D+S+ITNG+ RAF+TG+W HP +C+G+VA++++ NPLQ++
Sbjct: 461 RDLNSDRDLQFPLRYLDASIITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMM 520
Query: 895 SEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEK 1074
S++R+ R V YA K+GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +
Sbjct: 521 SDLRKSRQQVAYAGKVGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQ- 579
Query: 1075 PLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPL 1254
PLI+ G+ KLD++S + M K+F+NG+ +G C +P S V ++R MRR IDP
Sbjct: 580 PLIDRFVSCGMNKLDEISAKEIPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQ 639
Query: 1255 VEIKKDSQQ--KEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRX 1428
VEIK+D Q E+R+F DAGR+LRPLLVVEN +++ K F LL+
Sbjct: 640 VEIKRDKHQFPGEVRVFSDAGRILRPLLVVENL------NKIRKSKDRHYTFQALLQQEI 693
Query: 1429 XXXXXXXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLA 1608
D Q A G+ L +S K +THCELD SFLL L+ LIPFAN N A
Sbjct: 694 IEYIGVEEEEDIQCAWGIRHLFPSSGEK--VSGYTHCELDLSFLLGLSCGLIPFANHNFA 751
Query: 1609 TRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL----------- 1755
R LYQSEKHS+QAIG+ TT+ R DT H+L YPQ+PLF+T++ C+
Sbjct: 752 RRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQLYYPQRPLFKTVTADCIGRSDYTIGRKD 811
Query: 1756 --SKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQP 1929
++P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + +E E E
Sbjct: 812 DFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHIRSYKAEVETKEPIK 871
Query: 1930 LNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKH 2109
+ +DFGK ++D LDDDGLP++ + L SGD++IGKV D S+K+KH
Sbjct: 872 RLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKMKH 929
Query: 2110 TEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTK 2289
TEKG V +VL++ ND GK +A V LR++R P VGDKFSSMHGQKGV+GF+E QEN PFT
Sbjct: 930 TEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCVGDKFSSMHGQKGVIGFLESQENFPFTC 989
Query: 2290 QGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCG 2469
QGIVPD++INPHAFP+RQTPGQL E TPF P ++E ++E+LHK G
Sbjct: 990 QGIVPDVVINPHAFPTRQTPGQLLEAALGKGIALGGAMRYATPFTPASLEVISEQLHKAG 1049
Query: 2470 YQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRK 2649
+ + G E + NGRTG + IF+GP FYQRL HMAEDK+K+RN GPVHPLTRQPV DRK
Sbjct: 1050 FSRGGAESVINGRTGERMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRK 1109
Query: 2650 RHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGV 2814
R GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MHIC C+ VA VV+ +
Sbjct: 1110 RFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRGVPGGKRI 1169
Query: 2815 RGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
RGP+C FC+++++ V++ VPY KLLYQELF MGICLKF+TE
Sbjct: 1170 RGPYCGFCRSSENTVRIAVPYGAKLLYQELFCMGICLKFQTE 1211
>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
[Brachypodium distachyon]
Length = 1213
Score = 983 bits (2540), Expect = 0.0
Identities = 504/1004 (50%), Positives = 670/1004 (66%), Gaps = 25/1004 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDR---YLKKWDKVIVKLNED 174
GGYF+IKG EK+FIAQE+RC TRIWV ++P W Y R Y+K D N D
Sbjct: 238 GGYFLIKGMEKIFIAQEQRCLTRIWVADQPCWNVSYLSEMKRRRVYIKLIDSTT---NND 294
Query: 175 IKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREI 354
+ K I +SF + +P+ LLF+ALG+SSD E+ MI D +
Sbjct: 295 LNGAKI--------------ISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASV 340
Query: 355 CEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQRE 534
I ++I +++ + FR + KY+DD +K++K+P + + +LFP I G R
Sbjct: 341 INAIYATIRESDELCEGFRQSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRN 400
Query: 535 KAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQ 714
K+ LGYMV CLL ++ G+R+ +NKDD+RNKRLEL G+LLGR+++ LR + ++KA+Q
Sbjct: 401 KSFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQ 460
Query: 715 KDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVL 894
+DL+ +DL+ Y+D+S+ITNG+ RAF+TG+W HP +C+G+VA++++ NPLQ++
Sbjct: 461 RDLNSDRDLQFPLRYLDASIITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMM 520
Query: 895 SEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEK 1074
S++R+ R V YA K+GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS +
Sbjct: 521 SDLRKSRQQVAYAGKVGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQ- 579
Query: 1075 PLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPL 1254
PLI+ G+ KLD++S + M K+F+NG+ +G C +P S V ++R MRR IDP
Sbjct: 580 PLIDRFVSCGMNKLDEISAKEIPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQ 639
Query: 1255 VEIKKDSQQ--KEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLY--LLKN 1422
VEIK+D Q E+R+F DAGR+LRPLLVVEN KS + P+ + LL+
Sbjct: 640 VEIKRDKHQFPGEVRVFSDAGRILRPLLVVENLN--------KIRKSKDRPYTFQALLQQ 691
Query: 1423 RXXXXXXXXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRN 1602
D Q A G+ L +S K +THCELD SFLL L+ LIPFAN N
Sbjct: 692 EIIEYIGVEEEEDIQCAWGIRHLFPSSGEK--VSGYTHCELDLSFLLGLSCGLIPFANHN 749
Query: 1603 LATRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL--------- 1755
A R LYQSEKHS+QAIG+ TT+ R DT H+L YPQ+PLF+T++ C+
Sbjct: 750 FARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQLYYPQRPLFKTVTADCIGRSDYTIGR 809
Query: 1756 ----SKPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDEN 1923
++P+ +NGQNAIVAVNVH G+NQEDSLV NRAS++RGMFR+ H R + +E E E
Sbjct: 810 KDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHIRSYKAEVETKEP 869
Query: 1924 QPLNSSRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKL 2103
+ +DFGK ++D LDDDGLP++ + L SGD++IGKV D S+K+
Sbjct: 870 TKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKM 927
Query: 2104 KHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPF 2283
KHTEKG +VL++ ND GK +A V LR++R P VGDKFSSMHGQKGV+GF+E QEN PF
Sbjct: 928 KHTEKGMAQRVLLSANDEGKNFAVVTLRQVRSPCVGDKFSSMHGQKGVIGFLESQENFPF 987
Query: 2284 TKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHK 2463
T QGIVPD++INPHAFP+RQTPGQL E TPF P ++E ++E+LHK
Sbjct: 988 TCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIALGGAMRYATPFTPASLEVISEQLHK 1047
Query: 2464 CGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHD 2643
G+ + G E + NGRTG + IF+GP FYQRL HMAEDK+K+RN GPVHPLTRQPV D
Sbjct: 1048 AGFSRSGAESVINGRTGERMHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVAD 1107
Query: 2644 RKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN----- 2808
RKR GGVKFGEMERDC+LAHGA +NL ERLF LSDFS MHIC C+ VA VV+ +
Sbjct: 1108 RKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHICRTCERVANVVMRSVPGGK 1167
Query: 2809 GVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
+RGP+C FC+++++ V++ VPY KLLYQELF MGICLKF+TE
Sbjct: 1168 RIRGPYCGFCRSSENTVRIAVPYGAKLLYQELFCMGICLKFQTE 1211
>gb|EMS61833.1| DNA-directed RNA polymerase D subunit 2a [Triticum urartu]
Length = 1269
Score = 976 bits (2524), Expect = 0.0
Identities = 504/1001 (50%), Positives = 672/1001 (67%), Gaps = 20/1001 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF+I+G EK+FIAQE+RC TRIW+ ++PVW Y R ++ VKL +
Sbjct: 260 GGYFLIRGMEKIFIAQEQRCLTRIWIADRPVWTVSYLSEIKRR-----RIYVKLIDS--- 311
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
K+N+ S I +SF + +P+ L+F+ALG+SSD E MI D +
Sbjct: 312 ---TKNND---FSGSKIISISFLYANMPIWLMFFALGVSSDKEAFDMIDMGDCDASVINA 365
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
I ++I +++ + FR + + +DD +K++K+P S ++ + +LFP IKG R KA+
Sbjct: 366 ISATISESDELCEGFRKSDKARQCVDDLVKSSKFPPGESFDDYIAKYLFPGIKGNRNKAL 425
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL ++ G+R+ +NKDD+RNKRLEL G+LLGR+++ LR + ++KA+Q+DL
Sbjct: 426 FLGYMVKCLLMAFTGKRRCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDL 485
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
+ +DL+ Y+D+S+ITNG+ RAF+TG+W HP +C+G+VA++++ NPLQ++S++
Sbjct: 486 NSDRDLEFPTRYLDASIITNGINRAFATGSWCHPYKRNERCSGIVATLRRTNPLQMMSDL 545
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V YA K GDARYPNPSYWG++CF+STPDGENCGLVKNLAVT++VS ++ PLI
Sbjct: 546 RKSRQQVAYAGKAGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVAQ-PLI 604
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
+ G+ KLD++ M K+F+NG+ +G C +P S V ++R MRR IDP VEI
Sbjct: 605 DRFVSCGMNKLDEIPAKQIPKMDKIFLNGDWVGSCADPASFVMRLRCMRRGGLIDPQVEI 664
Query: 1264 KKDSQQK--EIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXX 1437
K+D Q E+R+F DAGRLLRPLLVVEN K+ K F L++
Sbjct: 665 KRDKHQSPGEVRVFSDAGRLLRPLLVVENLNKITKR------KGSPYSFQALMQQEIIEF 718
Query: 1438 XXXXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRNLATRT 1617
D Q A G+ L ++S + +THCELD SFLL L+ SLIPFAN N A R
Sbjct: 719 IGVEEEEDIQCAWGIRHLFQSSGDE--VSGYTHCELDLSFLLGLSCSLIPFANHNFARRV 776
Query: 1618 LYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL-------------S 1758
LYQ+EKHS+QAIG+ TT+ R DT H+L YPQ+PLF+T+S C+ +
Sbjct: 777 LYQAEKHSQQAIGYSTTNPLTRVDTLSHQLYYPQRPLFKTVSADCIGRSDYTFGRKDDFA 836
Query: 1759 KPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNS 1938
+P+ +NGQNAIVAVN+H G+NQEDSLV NRAS++RGMFR+ R + +E E
Sbjct: 837 RPEYFNGQNAIVAVNIHQGFNQEDSLVMNRASLERGMFRTELMRSYKAEVETKGPSKRLK 896
Query: 1939 SRLDLDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEK 2118
+ ++FGK ++D LDDDGLPF+ S L GD++IGKV D S+KLKHTEK
Sbjct: 897 MKEKVNFGKMESKRGRVDNLDDDGLPFVGSSLQIGDIIIGKVSESGEDH--SIKLKHTEK 954
Query: 2119 GRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGI 2298
G V +VL++ ND GK +A V LR++R P VGDKFSSMHGQKGVVGF+E QEN PFT QGI
Sbjct: 955 GMVQRVLLSANDEGKHFAVVSLRQVRSPCVGDKFSSMHGQKGVVGFLESQENFPFTCQGI 1014
Query: 2299 VPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQ 2478
VPD++INPHAFP+RQTPGQL E TPF TVE ++E+LHK G+ +
Sbjct: 1015 VPDIVINPHAFPTRQTPGQLLEAALGKGIALGGKIKYATPFTTATVEVISEQLHKLGFSR 1074
Query: 2479 WGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHG 2658
G E + NG+TG +Q IF GP FYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR G
Sbjct: 1075 GGAESVLNGQTGKRMQQLIFAGPNFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFG 1134
Query: 2659 GVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGP 2823
GVKFGEMERDC+LAHGA +NL ERLF LSDFS M IC C+ A V++ +RGP
Sbjct: 1135 GVKFGEMERDCLLAHGAAANLHERLFTLSDFSEMRICQTCERGANVIMRPVSGGRKIRGP 1194
Query: 2824 HCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETEQM 2946
+C FCK+++++VK+ VPY KLLYQELF+MGICLKF+TE M
Sbjct: 1195 YCGFCKSSENIVKIAVPYGAKLLYQELFSMGICLKFQTECM 1235
>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
Length = 1343
Score = 973 bits (2516), Expect = 0.0
Identities = 503/1050 (47%), Positives = 688/1050 (65%), Gaps = 71/1050 (6%)
Frame = +1
Query: 4 GGYFIIKGHEK---------------------------VFIAQEERCNTRIWVQNKPVWM 102
GGYF+IKG EK VFIAQE++C TRIWV+++P WM
Sbjct: 319 GGYFLIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKVFIAQEQKCLTRIWVEDRPCWM 378
Query: 103 AVY-TPSNDR--YLKKWDKVIVKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVV 273
+ +P R Y+K D NED K I +SF + +P+
Sbjct: 379 VSFLSPIRRRRIYIKLIDSAN---NEDASGGKI--------------ISISFLYANMPIW 421
Query: 274 LLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLK 453
L+F+ALGISSD ++ +I D + I ++I +++ + FR + +Y+D+ +K
Sbjct: 422 LMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIK 481
Query: 454 NAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRL 633
N+K+P ++ + +LFP I G R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL
Sbjct: 482 NSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRL 541
Query: 634 ELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGT 813
+LAGELLGR+++ +R + ++KA+Q+DL+ +++L+ + Y+D+S+ITNGL RAFSTG+
Sbjct: 542 DLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGS 601
Query: 814 WPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFI 993
W HP +C G+VA++++ NPLQ++S++R+ R V YA K GDARYPNPSYWG++CF+
Sbjct: 602 WCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 661
Query: 994 STPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGE 1173
STPDGENCGLVKNLAVT+ VS + PLI+ G+ KL ++ + M K+F+NG+
Sbjct: 662 STPDGENCGLVKNLAVTATVSSRVAP-PLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGD 720
Query: 1174 LLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQL 1353
+G C++P S V ++R MRR IDP VEIK+D Q+E+R+F DAGR+LRPLLVVEN
Sbjct: 721 WVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVENL-- 778
Query: 1354 CIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDIL----QKASITK--- 1512
+++ K F +L++ D + A G+ L ++A + K
Sbjct: 779 ----NKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNK 834
Query: 1513 ------------GLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIG 1656
G +THCELD SFLL L+ +IPFAN N A R LYQSEKHS+QAIG
Sbjct: 835 AEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 894
Query: 1657 HYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL-------------SKPQLYNGQNAIVA 1797
+ TT+ +R DT H+L YPQ+PLF+T+ C+ ++P+ +NGQNAIVA
Sbjct: 895 YSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVA 954
Query: 1798 VNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGK 1965
VNVH G+NQEDS+V NRAS++RGMFR+ H+R + +E E ++ P + RL + DFGK
Sbjct: 955 VNVHQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGK 1013
Query: 1966 PSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMT 2145
++D LDDDGLP++ + L SGD++IGKV D S+KLKHTEKG V +VL++
Sbjct: 1014 MQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLS 1071
Query: 2146 TNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPH 2325
ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++INPH
Sbjct: 1072 ANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPH 1131
Query: 2326 AFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNG 2505
AFP+RQTPGQL E TPF + + +T++LHK G+ +WG E + NG
Sbjct: 1132 AFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNG 1191
Query: 2506 RTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMER 2685
RTG + IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMER
Sbjct: 1192 RTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMER 1251
Query: 2686 DCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKTAK 2850
DC+LAHGA +NL ERLF LSDFS MH+C C+ VA V++ +RGP+C FC++++
Sbjct: 1252 DCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSE 1311
Query: 2851 HVVKVNVPYACKLLYQELFAMGICLKFETE 2940
++V++NVPY KLLYQELF+MGICL+FETE
Sbjct: 1312 NIVRINVPYGAKLLYQELFSMGICLRFETE 1341
>emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
Length = 1343
Score = 973 bits (2514), Expect = 0.0
Identities = 504/1050 (48%), Positives = 687/1050 (65%), Gaps = 71/1050 (6%)
Frame = +1
Query: 4 GGYFIIKGHEK---------------------------VFIAQEERCNTRIWVQNKPVWM 102
GGYF+IKG EK VFIAQE++C TRIWV+++P WM
Sbjct: 319 GGYFLIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKVFIAQEQKCLTRIWVEDRPCWM 378
Query: 103 AVY-TPSNDR--YLKKWDKVIVKLNEDIKAKKKAKDNEPSYTSEKDEIVVSFFFITVPVV 273
+ +P R Y+K D NED K I +SF + +P+
Sbjct: 379 VSFLSPIRRRRIYIKLIDSAN---NEDASGGKI--------------ISISFLYANMPIW 421
Query: 274 LLFYALGISSDLEMVQMIGCSHEDREICEFILSSIYKAESELKDFRSREDVLKYIDDKLK 453
L+F+ALGISSD ++ +I D + I ++I +++ + FR + +Y+D+ +K
Sbjct: 422 LMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIK 481
Query: 454 NAKYPSPLSVEEVLDAHLFPFIKGQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRL 633
N+K+P ++ + +LFP I G R KA+ LGYMV CLL ++ G+R+ +NKDD+RNKRL
Sbjct: 482 NSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRL 541
Query: 634 ELAGELLGRQMQVLLRFLRKKILKAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGT 813
+LAGELLGR+++ +R + ++KA+Q+DL+ +++L+ + Y+D+S+ITNGL RAFSTG+
Sbjct: 542 DLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGS 601
Query: 814 WPHPTSYAAKCTGVVASMKQVNPLQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFI 993
W HP +C G+VA++++ NPLQ++S++R+ R V YA K GDARYPNPSYWG++CF+
Sbjct: 602 WCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFM 661
Query: 994 STPDGENCGLVKNLAVTSVVSGNSSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGE 1173
STPDGENCGLVKNLAVT+ VS + PLI+ G+ KL ++ + M K+F+NG+
Sbjct: 662 STPDGENCGLVKNLAVTATVSSRVAP-PLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGD 720
Query: 1174 LLGICNNPDSLVQKMRNMRRKQCIDPLVEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQL 1353
+G C++P S V ++R MRR IDP VEIK D Q+E+R+F DAGR+LRPLLVVEN
Sbjct: 721 WVGSCSDPASFVLRLRCMRRSGLIDPQVEIKWDKHQREVRVFSDAGRILRPLLVVENL-- 778
Query: 1354 CIKQHQLSTFKSCENPFLYLLKNRXXXXXXXXXXXDAQIACGVDIL----QKASITK--- 1512
+++ K F +L++ D + A G+ L ++A + K
Sbjct: 779 ----NKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNK 834
Query: 1513 ------------GLYPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQSEKHSRQAIG 1656
G +THCELD SFLL L+ +IPFAN N A R LYQSEKHS+QAIG
Sbjct: 835 AEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 894
Query: 1657 HYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCL-------------SKPQLYNGQNAIVA 1797
+ TT+ +R DT H+L YPQ+PLF+T+ C+ ++P+ +NGQNAIVA
Sbjct: 895 YSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVA 954
Query: 1798 VNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDL----DFGK 1965
VNVH G+NQEDSLV NRAS++RGMFR+ H+R + +E E ++ P + RL + DFGK
Sbjct: 955 VNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGK 1013
Query: 1966 PSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQVLMT 2145
++D LDDDGLP++ + L SGD++IGKV D S+KLKHTEKG V +VL++
Sbjct: 1014 MQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLS 1071
Query: 2146 TNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLIINPH 2325
ND GK +A V LR++R P +GDKFSSMHGQKGVVGF+E QEN PFT QGIVPD++INPH
Sbjct: 1072 ANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPH 1131
Query: 2326 AFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKMYNG 2505
AFP+RQTPGQL E TPF + + +T++LHK G+ +WG E + NG
Sbjct: 1132 AFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNG 1191
Query: 2506 RTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGEMER 2685
RTG + IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GGVKFGEMER
Sbjct: 1192 RTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMER 1251
Query: 2686 DCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE-----NGVRGPHCNFCKTAK 2850
DC+LAHGA +NL ERLF LSDFS MH+C C+ VA V++ +RGP+C FC++++
Sbjct: 1252 DCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSE 1311
Query: 2851 HVVKVNVPYACKLLYQELFAMGICLKFETE 2940
++V++NVPY KLLYQELF+MGICL+FETE
Sbjct: 1312 NIVRINVPYGAKLLYQELFSMGICLRFETE 1341
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 964 bits (2493), Expect = 0.0
Identities = 501/1006 (49%), Positives = 679/1006 (67%), Gaps = 27/1006 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF+IKG EK FIAQE+ C R+WV + P WM Y P + K +V VKL
Sbjct: 220 GGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRP-----IWKRKRVYVKL------ 268
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ +E + EK + V F +P+ +LF+ALG SSD E+V +I + +D I
Sbjct: 269 --EPPKDENNRGGEK-VLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNI 325
Query: 364 ILSSIYKAESELKD----FRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQR 531
+++SI++A+ E + FR + + + ++D +K+ K+P S++E + +LFP G +
Sbjct: 326 LVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVK 385
Query: 532 EKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAI 711
+KA LGYMV CLL +Y GRR+ +N+DD+RNKRLELAGELL R+++V +R ++++KA+
Sbjct: 386 QKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAM 445
Query: 712 QKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQV 891
Q++L G +DL+ +E Y+D+S+ITNGL+RAFSTG W HP + +GVVA++++ NPLQ+
Sbjct: 446 QRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQM 505
Query: 892 LSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSE 1071
++MR+ R VQY K+GDARYP+PS+WG+VCF+STPDGENCGLVKNLA+T +VS +
Sbjct: 506 TADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLD 565
Query: 1072 KPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDP 1251
PL++ L G+ KL D + + KVF++G+ +G+C +P S V ++R RR + +
Sbjct: 566 -PLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQ 624
Query: 1252 LVEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXX 1431
VEIK+D QQ E+RIF DAGR+LRPLLVVEN + ++ TFK + F LL
Sbjct: 625 QVEIKRDEQQGEVRIFSDAGRILRPLLVVENLK------KVKTFKGDDFTFQSLLDKGIV 678
Query: 1432 XXXXXXXXXDAQIACGVDILQKASITKGLYPP--FTHCELDPSFLLSLNASLIPFANRNL 1605
D A G+ L K PP +THCELD SFLL L+ +IP+AN +
Sbjct: 679 ELIGAEEEEDCSTAWGIKYLLKGHDD----PPVKYTHCELDMSFLLGLSCGIIPYANHDH 734
Query: 1606 ATRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCLSKP------- 1764
A R LYQSEKHS+QAIG TT+ +R DT H+L YPQ+PLFRT+ CL KP
Sbjct: 735 ARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHK 794
Query: 1765 ------QLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQ 1926
+ +NGQ AIVAVNVH GYNQEDSLV NRAS++RGMFRS H R + SE D N+
Sbjct: 795 GIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEV--DNNE 852
Query: 1927 PLNSSRLDLD---FGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSL 2097
L+ R D FGK ++D LDDDG PFI ++L +GD++IG+ D S+
Sbjct: 853 SLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDH--SI 910
Query: 2098 KLKHTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENM 2277
KLKHTE+G V +V+++ ND GK +A V LR++R P +GDKFSSMHGQKGV+GF+E QEN
Sbjct: 911 KLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENF 970
Query: 2278 PFTKQGIVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERL 2457
PFT QGIVPD++INPHAFPSRQTPGQL E TPF ++V+ + ++L
Sbjct: 971 PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQL 1030
Query: 2458 HKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPV 2637
H+ G+ +WG E++YNGRTG L+ IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV
Sbjct: 1031 HRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPV 1090
Query: 2638 HDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN--- 2808
DRKR GG+KFGEMERDC++AHGA +NL ERLF LSD + MHIC +C+ ++ V+ +
Sbjct: 1091 SDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAG 1150
Query: 2809 --GVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
VRGP+C +C++++ +VKVNVPY KLL QELF+MGI LKFET+
Sbjct: 1151 GRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQ 1196
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 964 bits (2492), Expect = 0.0
Identities = 499/993 (50%), Positives = 678/993 (68%), Gaps = 14/993 (1%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYF+IKG EK FIAQE+ C R+WV + P WM Y P + K +V VKL
Sbjct: 256 GGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRP-----IWKRKRVYVKL------ 304
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ +E + EK + V F +P+ +LF+ALG SSD E+V +I + +D I
Sbjct: 305 --EPPKDENNRGGEK-VLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNI 361
Query: 364 ILSSIYKAESELKD----FRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQR 531
+++SI++A+ E + FR + + + ++D +K+ K+P S++E + +LFP G +
Sbjct: 362 LVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVK 421
Query: 532 EKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAI 711
+KA LGYMV CLL +Y GRR+ +N+DD+RNKRLELAGELL R+++V +R ++++KA+
Sbjct: 422 QKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAM 481
Query: 712 QKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQV 891
Q++L G +DL+ +E Y+D+S+ITNGL+RAFSTG W HP + +GVVA++++ NPLQ+
Sbjct: 482 QRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQM 541
Query: 892 LSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSE 1071
++MR+ R VQY K+GDARYP+PS+WG+VCF+STPDGENCGLVKNLA+T +VS +
Sbjct: 542 TADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLD 601
Query: 1072 KPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDP 1251
PL++ L G+ KL D + + KVF++G+ +G+C +P S V ++R RR + +
Sbjct: 602 -PLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQ 660
Query: 1252 LVEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXX 1431
VEIK+D QQ E+RIF DAGR+LRPLLVVEN + ++ TFK + F LL
Sbjct: 661 QVEIKRDEQQGEVRIFSDAGRILRPLLVVENLK------KVKTFKGDDFTFQSLLDKGIV 714
Query: 1432 XXXXXXXXXDAQIACGVDILQKASITKGLYPP--FTHCELDPSFLLSLNASLIPFANRNL 1605
D A G+ L K PP +THCELD SFLL L+ +IP+AN +
Sbjct: 715 ELIGAEEEEDCSTAWGIKYLLKGHDD----PPVKYTHCELDMSFLLGLSCGIIPYANHDH 770
Query: 1606 ATRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCLSKPQLYNGQN 1785
A R LYQSEKHS+QAIG TT+ +R DT H+L YPQ+PLFRT+ L +P+ +NGQ
Sbjct: 771 ARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISD-LPRPEYFNGQI 829
Query: 1786 AIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNSSRLDLD--- 1956
AIVAVNVH GYNQEDSLV NRAS++RGMFRS H R + SE D N+ L+ R D
Sbjct: 830 AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEV--DNNESLDKKRKSEDSVH 887
Query: 1957 FGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTEKGRVDQV 2136
FGK ++D LDDDG PFI ++L +GD++IG+ D S+KLKHTE+G V +V
Sbjct: 888 FGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDH--SIKLKHTERGMVQKV 945
Query: 2137 LMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQGIVPDLII 2316
+++ ND GK +A V LR++R P +GDKFSSMHGQKGV+GF+E QEN PFT QGIVPD++I
Sbjct: 946 VVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 1005
Query: 2317 NPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQQWGMEKM 2496
NPHAFPSRQTPGQL E TPF ++V+ + ++LH+ G+ +WG E++
Sbjct: 1006 NPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERV 1065
Query: 2497 YNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRHGGVKFGE 2676
YNGRTG L+ IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR GG+KFGE
Sbjct: 1066 YNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGE 1125
Query: 2677 MERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLEN-----GVRGPHCNFCK 2841
MERDC++AHGA +NL ERLF LSD + MHIC +C+ ++ V+ + VRGP+C +C+
Sbjct: 1126 MERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCE 1185
Query: 2842 TAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
+++ +VKVNVPY KLL QELF+MGI LKFET+
Sbjct: 1186 SSEEIVKVNVPYGAKLLCQELFSMGISLKFETQ 1218
>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1217
Score = 962 bits (2487), Expect = 0.0
Identities = 500/999 (50%), Positives = 670/999 (67%), Gaps = 20/999 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYFI+KG EK FIAQE+ C R+WV N P WM Y P R +V +KL E +K
Sbjct: 243 GGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKR-----KRVYIKLTETLKL 297
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ + ++ + + +P+ +LF+ALG+SSD E+V +I ED I
Sbjct: 298 E---------HIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNI 348
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
+++SI++A+ +DFR + L Y+D +KN K+P SVEE ++A+LFP + G ++KA
Sbjct: 349 LVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKAR 408
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL S++GRR+V+N+DD+RNKRLELAGELL R+++ ++ ++++KA+Q+DL
Sbjct: 409 FLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDL 468
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
G + ++ +E Y+D+S+ITNGL+RAFSTG W HP + +GVVA++++ NPLQ+ ++M
Sbjct: 469 YGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADM 528
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V Y K+GDARYP+PS+WG++CF+STPDGENCGLVKNLA +VS KP +
Sbjct: 529 RKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVS-TIILKPFL 587
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E L + G+ KL D + H KV ++GE +G+C + V K+R RR+ + VE+
Sbjct: 588 ETLFRCGMQKLVDDCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEV 647
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D Q E+RIF D+GR+LRPLLVV N + ++ K + F LL N
Sbjct: 648 KRDELQGEVRIFSDSGRILRPLLVVSNLK------KIKALKGGDYGFQSLLDNGIIEFIG 701
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPP--FTHCELDPSFLLSLNASLIPFANRNLATRT 1617
D + A GV+ + KA PP +THCELD SFLL L+ +IPFAN + A R
Sbjct: 702 PEEEEDCRTAWGVEYILKADKEN---PPAKYTHCELDMSFLLGLSCGIIPFANHDHARRV 758
Query: 1618 LYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTL-----------SYQ--CLS 1758
LYQSEKHS+QAIG T + R DT+ H+L YPQ+PLFRT+ YQ L
Sbjct: 759 LYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLP 818
Query: 1759 KPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNS 1938
+P+ +NGQ AIVAVNVH GYNQEDSLV NRAS++RGMFRS H R + +E + E
Sbjct: 819 RPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKL 878
Query: 1939 SRLD-LDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTE 2115
D ++FGK ++D LDDDG PFI ++L SGD++IGK +D S+KLKHTE
Sbjct: 879 KIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFAESGADH--SVKLKHTE 936
Query: 2116 KGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQG 2295
+G V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGV+GF+E QEN PFT QG
Sbjct: 937 RGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 996
Query: 2296 IVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQ 2475
IVPD++INPHAFPSRQTPGQL E TPF ++V+ + E+L G+
Sbjct: 997 IVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFT 1056
Query: 2476 QWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRH 2655
+WG E++YNGRTG + IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR
Sbjct: 1057 RWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF 1116
Query: 2656 GGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVV---LENG-VRGP 2823
GG+KFGEMERDC++AHGA +NL ERLF LSD S MHIC KC+ +A V+ ++ G VRGP
Sbjct: 1117 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICGKCKNMANVIQRTVQGGKVRGP 1176
Query: 2824 HCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FC++ + +VKVNVPY KLL QELF+MGI LKF+TE
Sbjct: 1177 FCRFCESVEDIVKVNVPYGAKLLCQELFSMGISLKFDTE 1215
>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
lycopersicum]
Length = 1217
Score = 961 bits (2484), Expect = 0.0
Identities = 500/999 (50%), Positives = 669/999 (66%), Gaps = 20/999 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYFI+KG EK FIAQE+ C R+WV N P WM Y P R +V +KL E +K
Sbjct: 243 GGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKR-----KRVYIKLTETLKL 297
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ + ++ + + +P+ +LF+ALG+SSD E+V +I ED I
Sbjct: 298 E---------HIKGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNI 348
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
+++SI++A+ +DFR + L Y+D +KN K+P SVEE ++A+LFP + G ++KA
Sbjct: 349 LVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKAR 408
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL S++GRR+V+N+DD+RNKRLELAGELL R+++ ++ ++++KA+Q+DL
Sbjct: 409 FLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDL 468
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
G + ++ +E Y+D+S+ITNGL+RAFSTG W HP + +GVVA++++ NPLQ+ ++M
Sbjct: 469 YGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADM 528
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V Y K+GDARYP+PS+WG++CF+STPDGENCGLVKNLA +VS KP +
Sbjct: 529 RKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVS-TIILKPFL 587
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E L + G+ KL D + H KV ++GE +G+C + V K+R RR+ + VE+
Sbjct: 588 ETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEV 647
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D Q E+RIF D GR+LRPLLVV N + ++ K + F LL N
Sbjct: 648 KRDELQGEVRIFSDPGRILRPLLVVSNLK------KIKALKGGDYGFQSLLDNGIIELIG 701
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPP--FTHCELDPSFLLSLNASLIPFANRNLATRT 1617
D + A GV+ + KA PP +THCELD SFLL L+ +IPFAN + A R
Sbjct: 702 PEEEEDCRTAWGVEYILKADKEN---PPAKYTHCELDMSFLLGLSCGIIPFANHDHARRV 758
Query: 1618 LYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTL-----------SYQ--CLS 1758
LYQSEKHS+QAIG T + R DT+ H+L YPQ+PLFRT+ YQ L
Sbjct: 759 LYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLP 818
Query: 1759 KPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNS 1938
+P+ +NGQ AIVAVNVH GYNQEDSLV NRAS++RGMFRS H R + +E + E
Sbjct: 819 RPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKL 878
Query: 1939 SRLD-LDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTE 2115
D ++FGK ++D LDDDG PFI ++L SGD++IGK +D S+KLKHTE
Sbjct: 879 KIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGADH--SVKLKHTE 936
Query: 2116 KGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQG 2295
+G V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGV+GF+E QEN PFT QG
Sbjct: 937 RGMVQKVLLSANDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 996
Query: 2296 IVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQ 2475
IVPD++INPHAFPSRQTPGQL E TPF ++V+ + E+L G+
Sbjct: 997 IVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFT 1056
Query: 2476 QWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRH 2655
+WG E++YNGRTG + IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR
Sbjct: 1057 RWGNERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF 1116
Query: 2656 GGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVV---LENG-VRGP 2823
GG+KFGEMERDC++AHGA +NL ERLF LSD S MHIC KC+ +A V+ ++ G VRGP
Sbjct: 1117 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICGKCKNMANVIQRTVQGGKVRGP 1176
Query: 2824 HCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FC++ + +VKVNVPY KLL QELF+MGI LKF+TE
Sbjct: 1177 FCRFCESVEDIVKVNVPYGAKLLCQELFSMGISLKFDTE 1215
>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
RNA polymerases IV and V subunit 2-like [Citrus sinensis]
gi|557545145|gb|ESR56123.1| hypothetical protein
CICLE_v10018562mg [Citrus clementina]
Length = 1198
Score = 958 bits (2477), Expect = 0.0
Identities = 504/1009 (49%), Positives = 669/1009 (66%), Gaps = 30/1009 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLN----- 168
GGYFIIKG EKVF+AQE+ C R+WV N W Y N R +++IV+L
Sbjct: 218 GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR-----NRLIVRLVDMSKF 272
Query: 169 EDIKAKKKAKDNEPSYTSEKDEIVVSFFFIT--VPVVLLFYALGISSDLEMVQMIGCSHE 342
EDIK +K V+S +F++ +P+ +LF+ALG+SSD E+V +I + E
Sbjct: 273 EDIKGGEK---------------VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCE 317
Query: 343 DREICEFILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIK 522
D I + +SI+ A+++ +FR + LKY+D +K +P S EE ++ +LFP +
Sbjct: 318 DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 377
Query: 523 GQREKAMLLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKIL 702
G ++KA LGYMV CLL +Y GRR+ +N+DD+RNKRLELAGELL R+++V + RK++
Sbjct: 378 GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 437
Query: 703 KAIQKDLSGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNP 882
KA+Q+DL G + ++ +E Y+D+S++TNGL+RAFSTG W HP + +G+VA++ + NP
Sbjct: 438 KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 497
Query: 883 LQVLSEMRRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGN 1062
LQ L ++RR R VQY K+GDARYP+PS+WG++CF+STPDGENCGLVKNL VT +VS
Sbjct: 498 LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-T 556
Query: 1063 SSEKPLIEFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQC 1242
S +P+ E L +G+ KL D + KVFV+G+ +G+C + S V ++R RR++
Sbjct: 557 SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 616
Query: 1243 IDPLVEIKKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKN 1422
+ VEIK+D Q E+RIF DAGR+LRPLLVVEN ++ + + F LL +
Sbjct: 617 LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDH 670
Query: 1423 RXXXXXXXXXXXDAQIACGVDILQKASITKGLYPPFTHCELDPSFLLSLNASLIPFANRN 1602
D A G+ L K I FTHCELD SFLL L+ +IPFAN +
Sbjct: 671 GIIELVGTEEEEDCCTAWGIKYLLK-DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 729
Query: 1603 LATRTLYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTLSYQCLSK------- 1761
A R LYQS+KHS QAIG TT+ +R DT H+L YPQ+PLFRT+ CL K
Sbjct: 730 HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 789
Query: 1762 ----PQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQP 1929
P+LYNGQNAIVAVNVH GYNQEDSLV NRAS++RGMFRS H R + +E + E Q
Sbjct: 790 ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 849
Query: 1930 LNSSRLDL-DFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLK 2106
S D+ +FGK ++D LDDDG PFI ++L GD++IGK S ++ S+KLK
Sbjct: 850 KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQCGDIVIGKYA--DSGADHSIKLK 907
Query: 2107 HTEKGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFT 2286
HTE+G V +V++++ND GK ++ V LR++R P +GDKFSSMHGQKGV+GF+E QEN PFT
Sbjct: 908 HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 967
Query: 2287 KQGIVPDLIINPHAFPSRQTPGQLFEC------XXXXXXXXXXXXXXXTPFRPMTVEYLT 2448
QGIVPD++INPHAFPSRQTPGQL E TPF +V+ +T
Sbjct: 968 IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1027
Query: 2449 ERLHKCGYQQWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTR 2628
E+LH+ G+ +WG E++Y+GRTG ++ IFIGPTFYQRLIHM+EDK+K+RN GPVHPLTR
Sbjct: 1028 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1087
Query: 2629 QPVHDRKRHGGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLE- 2805
QPV DRKR GG+KFGEMERDC++AHGA +NL ERLF LSD MHIC KC+ VA V+
Sbjct: 1088 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1147
Query: 2806 ----NGVRGPHCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
VRGP+C C + +VK NVPY KLL QELF+MGI LKF+TE
Sbjct: 1148 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1196
>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1219
Score = 958 bits (2476), Expect = 0.0
Identities = 496/999 (49%), Positives = 672/999 (67%), Gaps = 20/999 (2%)
Frame = +1
Query: 4 GGYFIIKGHEKVFIAQEERCNTRIWVQNKPVWMAVYTPSNDRYLKKWDKVIVKLNEDIKA 183
GGYFI+KG EK+FIAQE+ C R+WV N WM Y R ++V +KL E +K
Sbjct: 241 GGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKR-----NRVYLKLTETLKH 295
Query: 184 KKKAKDNEPSYTSEKDEIVVSFFFITVPVVLLFYALGISSDLEMVQMIGCSHEDREICEF 363
+ + + + + +F +P+ +LF+ALG+SSD E+V +I +D I
Sbjct: 296 E---------HIKGEAKALSVYFLAEMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINI 346
Query: 364 ILSSIYKAESELKDFRSREDVLKYIDDKLKNAKYPSPLSVEEVLDAHLFPFIKGQREKAM 543
+++SI+ A+ +DFR + L Y+D +K+ K+P SVEE + +LFP + G ++KA
Sbjct: 347 LVASIHDADKNCEDFRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKAR 406
Query: 544 LLGYMVNCLLSSYLGRRQVENKDDYRNKRLELAGELLGRQMQVLLRFLRKKILKAIQKDL 723
LGYMV CLL SY+GRR+V+N+DD+RNKRL+LAGELL R+++ ++ ++++KA+Q+DL
Sbjct: 407 FLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDL 466
Query: 724 SGQKDLKSMECYIDSSVITNGLARAFSTGTWPHPTSYAAKCTGVVASMKQVNPLQVLSEM 903
G + ++ +E Y+D+S+ITNGL+RAFSTG W HP + +GVVA++++ NPLQ+ +++
Sbjct: 467 CGDRQVQPLEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADL 526
Query: 904 RRLRLWVQYAAKLGDARYPNPSYWGRVCFISTPDGENCGLVKNLAVTSVVSGNSSEKPLI 1083
R+ R V Y K+GDARYP+PS+WG+VCF+STPDGENCGLVKNLA +VS + KPL+
Sbjct: 527 RKTRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVS-TTVLKPLL 585
Query: 1084 EFLEKNGIMKLDDVSLSDFHSMTKVFVNGELLGICNNPDSLVQKMRNMRRKQCIDPLVEI 1263
E L + G+ KL D S + H KV ++G+ +G+C + V K+R RR+ + VE+
Sbjct: 586 ETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEV 645
Query: 1264 KKDSQQKEIRIFCDAGRLLRPLLVVENQQLCIKQHQLSTFKSCENPFLYLLKNRXXXXXX 1443
K+D QQ E+RIF DAGR++RPLLVV N + IK + K + F LL
Sbjct: 646 KRDEQQDEVRIFSDAGRIMRPLLVVSNLKN-IKSLK-DGMKGGDYGFQTLLDKGIIELIG 703
Query: 1444 XXXXXDAQIACGVDILQKASITKGLYPP--FTHCELDPSFLLSLNASLIPFANRNLATRT 1617
D + A GV+ L KA PP +THCELD SFLL L+ LIPFAN + A R
Sbjct: 704 PEEEEDCRTAWGVEYLLKADKEN---PPVNYTHCELDMSFLLGLSCGLIPFANHDHARRV 760
Query: 1618 LYQSEKHSRQAIGHYTTSLKVRSDTSGHELLYPQKPLFRTL------SYQC-------LS 1758
LYQSEKHS+QAIG T + R DT+ H+L YPQ+PLF T+ +C LS
Sbjct: 761 LYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLS 820
Query: 1759 KPQLYNGQNAIVAVNVHYGYNQEDSLVANRASIDRGMFRSMHYRLFTSEAEYDENQPLNS 1938
+P+ YNGQ AIVAVNVH GYNQEDS+V NRAS++RGMFRS H R + +E + E S
Sbjct: 821 RPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKS 880
Query: 1939 SRLD-LDFGKPSGSNLKIDKLDDDGLPFISSDLYSGDVLIGKVGPQPSDSNFSLKLKHTE 2115
D ++FGK ++D LDDDG PFI ++L SGD++IGK +D S+K+KHTE
Sbjct: 881 KVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAESGADH--SVKMKHTE 938
Query: 2116 KGRVDQVLMTTNDCGKKYAKVRLREMRVPSVGDKFSSMHGQKGVVGFIEEQENMPFTKQG 2295
+G V +VL++ ND GK +A V LR++R P +GDKFSSMHGQKGV+G++E QEN PFT QG
Sbjct: 939 RGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQG 998
Query: 2296 IVPDLIINPHAFPSRQTPGQLFECXXXXXXXXXXXXXXXTPFRPMTVEYLTERLHKCGYQ 2475
IVPD++INPHAFPSRQTPGQL E TPF ++V+ + ++LH G+
Sbjct: 999 IVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFS 1058
Query: 2476 QWGMEKMYNGRTGSPLQMKIFIGPTFYQRLIHMAEDKMKYRNHGPVHPLTRQPVHDRKRH 2655
+WG E++YNGRTG + IF+GPTFYQRLIHMAEDK+K+RN GPVHPLTRQPV DRKR
Sbjct: 1059 RWGSERVYNGRTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF 1118
Query: 2656 GGVKFGEMERDCMLAHGATSNLLERLFYLSDFSTMHICSKCQMVAPVVLENG----VRGP 2823
GG+KFGEMERDC++AHGA +NL ERLF LSD S MHIC KC+ +A V+ + +RGP
Sbjct: 1119 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICGKCKNMANVIQRSAPGGKIRGP 1178
Query: 2824 HCNFCKTAKHVVKVNVPYACKLLYQELFAMGICLKFETE 2940
C FC++ + +VKV+VPY KLL QELF+MGI LKF+TE
Sbjct: 1179 FCRFCESVEDIVKVDVPYGAKLLCQELFSMGISLKFDTE 1217