BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00006976
         (627 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago trunca...   135   9e-30
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   133   5e-29
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   133   5e-29
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   133   5e-29
ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   132   1e-28
gb|EAZ08263.1| hypothetical protein OsI_30516 [Oryza sativa Indi...   131   2e-28
gb|ESW28387.1| hypothetical protein PHAVU_003G282700g [Phaseolus...   130   2e-28
gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus pe...   130   2e-28
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   130   3e-28
emb|CAD45446.1| DNA-directed RNA polymerase, chloroplast precurs...   130   3e-28
emb|CAD45445.1| DNA-directed RNA polymerase, chloroplast precurs...   130   3e-28
gb|ABD96891.1| hypothetical protein [Cleome spinosa]                  130   4e-28
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   129   5e-28
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...   129   5e-28
ref|XP_004297187.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   129   9e-28
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   129   9e-28
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                      129   9e-28
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...   128   1e-27
ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   128   1e-27
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   128   2e-27

>ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355522738|gb|AET03192.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 259

 Score =  135 bits (340), Expect = 9e-30
 Identities = 77/178 (43%), Positives = 105/178 (58%)
 Frame = -3

Query: 541 STTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDRRKEGQLRRRQVK 362
           ST  E   S  +EV      ++    E   P+   K+      + ++  K   LRRRQ+K
Sbjct: 91  STDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKK-----NKNNSYKYKMLRRRQIK 145

Query: 361 TETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQKNHQAKEGR 182
            ETEAW +A  EY++L E+MR   + PNLPY+KS FLGWF PL+NAI A Q+    K+ +
Sbjct: 146 IETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQE--ICKDTK 203

Query: 181 RKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGEAVEHEV 8
            ++ H    Y   LPPDM+AVITMHK+  LLM+      S RV+ AA ++GEA+EHEV
Sbjct: 204 TRLSHA--PYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEV 259


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
           gi|48716846|dbj|BAD23544.1| putative phage-type RNA
           polymerase [Oryza sativa Japonica Group]
           gi|215694941|dbj|BAG90132.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 951

 Score =  133 bits (334), Expect = 5e-29
 Identities = 69/131 (52%), Positives = 87/131 (66%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   LRRRQ++ ETEAW +A EEY++L  +M    + PNLPYVKS FLGWF PLR+ I A
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
                Q   G R     H  Y  MLP DM+AVITMHK+  LLM+G  +  SVRV+ AA +
Sbjct: 236 ----EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDG-SVRVIQAACQ 290

Query: 34  VGEAVEHEVKV 2
           +GEA+EHEV++
Sbjct: 291 IGEAIEHEVRI 301


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
           gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
           Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
           single subunit RNA polymerase [Oryza sativa Japonica
           Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
           sativa Japonica Group]
          Length = 1017

 Score =  133 bits (334), Expect = 5e-29
 Identities = 69/131 (52%), Positives = 87/131 (66%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   LRRRQ++ ETEAW +A EEY++L  +M    + PNLPYVKS FLGWF PLR+ I A
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
                Q   G R     H  Y  MLP DM+AVITMHK+  LLM+G  +  SVRV+ AA +
Sbjct: 236 ----EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDG-SVRVIQAACQ 290

Query: 34  VGEAVEHEVKV 2
           +GEA+EHEV++
Sbjct: 291 IGEAIEHEVRI 301


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  133 bits (334), Expect = 5e-29
 Identities = 69/131 (52%), Positives = 87/131 (66%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   LRRRQ++ ETEAW +A EEY++L  +M    + PNLPYVKS FLGWF PLR+ I A
Sbjct: 142 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 201

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
                Q   G R     H  Y  MLP DM+AVITMHK+  LLM+G  +  SVRV+ AA +
Sbjct: 202 ----EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDG-SVRVIQAACQ 256

Query: 34  VGEAVEHEVKV 2
           +GEA+EHEV++
Sbjct: 257 IGEAIEHEVRI 267


>ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Cicer arietinum]
          Length = 1002

 Score =  132 bits (331), Expect = 1e-28
 Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 4/180 (2%)
 Frame = -3

Query: 529 EPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDD----RRKEGQLRRRQVK 362
           E + SS+ E   S   ++  + E +  EE  K    +  +N        K   L+RRQ+K
Sbjct: 98  EAIESSDTEDDHSGCEEVQKLLEEMVKEEKKKPELENQKNNSGGGMASYKYKMLKRRQIK 157

Query: 361 TETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQKNHQAKEGR 182
            ETEAW +A  EY++L E+MR   + PNLPY+KS FLGWF PL+NAI         K+ R
Sbjct: 158 IETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAI--ADDQELCKDYR 215

Query: 181 RKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGEAVEHEVKV 2
            +    H  Y   LPPDM+AVITMHK+  LLM+      S RV+ AA ++GEA+EHE K+
Sbjct: 216 HRA--SHSPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGKI 273


>gb|EAZ08263.1| hypothetical protein OsI_30516 [Oryza sativa Indica Group]
          Length = 845

 Score =  131 bits (329), Expect = 2e-28
 Identities = 69/129 (53%), Positives = 85/129 (65%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   LRRRQ++ ETEAW +A EEY++L  +M    + PNLPYVKS FLGWF PLR+ I A
Sbjct: 118 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 177

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
                Q   G R     H  Y  MLP DM+AVITMHK+  LLM+G  +  SVRV+ AA +
Sbjct: 178 ----EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDG-SVRVIQAACQ 232

Query: 34  VGEAVEHEV 8
           +GEA+EHEV
Sbjct: 233 IGEAIEHEV 241


>gb|ESW28387.1| hypothetical protein PHAVU_003G282700g [Phaseolus vulgaris]
          Length = 959

 Score =  130 bits (328), Expect = 2e-28
 Identities = 65/131 (49%), Positives = 88/131 (67%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   L+RRQ+K ETEAW +A  EY++L E+MR   + PNLP++KS FLGWF PLRNAI  
Sbjct: 109 KYKMLKRRQIKAETEAWEEAAREYEELLEDMRKQKLAPNLPFMKSLFLGWFEPLRNAI-- 166

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
           L +    K+ R ++ HG   Y   LP DM+AV+TMHK+  LLM+      + RV+ AA +
Sbjct: 167 LAEQELCKDSRCRLNHG--PYFNDLPADMMAVVTMHKLVALLMTNSNGVGTARVIQAACQ 224

Query: 34  VGEAVEHEVKV 2
           VGEA+EHE ++
Sbjct: 225 VGEAIEHEARI 235


>gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score =  130 bits (328), Expect = 2e-28
 Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 4/208 (1%)
 Frame = -3

Query: 613 GRSTRRGPIVVHKDARFNVFRASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIK 434
           GR +   P   +  + F  +    ++  E + S++ E   S + ++  + E L  E ++ 
Sbjct: 74  GRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDSSGSEEIQEMLEDLIRENNMV 133

Query: 433 QHPIHHPDND----DRRKEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYV 266
           +     P          K   LR+RQ+K ETEAW++A +EY++L  +M    + PNLPY+
Sbjct: 134 ESHFKQPKRVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLADMCEQKLAPNLPYI 193

Query: 265 KSQFLGWFHPLRNAIDALQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLM 86
           KS FLGWF PLR+AI A Q + +    R+     H  Y   LP D +AVITMHK+  LLM
Sbjct: 194 KSLFLGWFEPLRDAIAADQDSCKQPNSRQ----SHAPYFDHLPADKMAVITMHKLMGLLM 249

Query: 85  SGQAENCSVRVVLAAMKVGEAVEHEVKV 2
           +      SVRVV AA  +GEA+EHEV++
Sbjct: 250 TNNGGIGSVRVVQAACAIGEAIEHEVRI 277


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Setaria italica]
          Length = 1005

 Score =  130 bits (327), Expect = 3e-28
 Identities = 67/131 (51%), Positives = 89/131 (67%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   LRRRQ++ ETEAW +A +EY++L  +M    + PNLPY+KS FLGWF PLR+ I A
Sbjct: 164 KYASLRRRQIRVETEAWEQAAKEYRELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDQI-A 222

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
            ++   A  G R     H  Y  MLP DM+AVITMHK+  LLM+G  +  SVRV+ AA +
Sbjct: 223 AEQELVANRGSRA---SHGPYFNMLPADMMAVITMHKLMGLLMTGSGDG-SVRVIQAACQ 278

Query: 34  VGEAVEHEVKV 2
           +GEA+EHEV++
Sbjct: 279 IGEAIEHEVRI 289


>emb|CAD45446.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
           subsp. vulgare]
          Length = 948

 Score =  130 bits (327), Expect = 3e-28
 Identities = 67/128 (52%), Positives = 88/128 (68%)
 Frame = -3

Query: 385 QLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQK 206
           +LR+RQVK ETEAW +A EEY++L  EM   N+ P LPYVKS FLGWF PLR+A+     
Sbjct: 112 RLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAV----A 167

Query: 205 NHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGE 26
             Q  + R+++ H + +Y+ +LPP+ +AVI MHK+  LLMS +    SVRVV AA  +GE
Sbjct: 168 RDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 227

Query: 25  AVEHEVKV 2
           AVE E KV
Sbjct: 228 AVEREYKV 235


>emb|CAD45445.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
           subsp. vulgare]
          Length = 948

 Score =  130 bits (327), Expect = 3e-28
 Identities = 67/128 (52%), Positives = 88/128 (68%)
 Frame = -3

Query: 385 QLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQK 206
           +LR+RQVK ETEAW +A EEY++L  EM   N+ P LPYVKS FLGWF PLR+A+     
Sbjct: 112 RLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAV----A 167

Query: 205 NHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGE 26
             Q  + R+++ H + +Y+ +LPP+ +AVI MHK+  LLMS +    SVRVV AA  +GE
Sbjct: 168 RDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSSKDGCGSVRVVQAAHSIGE 227

Query: 25  AVEHEVKV 2
           AVE E KV
Sbjct: 228 AVEREYKV 235


>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
          Length = 1021

 Score =  130 bits (326), Expect = 4e-28
 Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 4/191 (2%)
 Frame = -3

Query: 562 NVFRASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDD----RR 395
           N   A  ST +E   S  DEV++        + E  + E+  K H       +D     +
Sbjct: 135 NAAEAVSSTDIEEDASVVDEVQE-------LLREMKKEEKKEKVHLRRVKRQEDLGMLEK 187

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   L+RRQVK ETEAW KA  EYK+L  +M    + PNLPYVKS FLGWF PLR AI  
Sbjct: 188 KYQSLKRRQVKIETEAWEKAANEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLREAIAK 247

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
            Q+ ++  + R    +    Y+  LP DM+AVITMHK+  LLM+G    C V+V++AA  
Sbjct: 248 DQELYRLGKNRANYAY----YIDQLPADMIAVITMHKLMGLLMTGGDNGC-VKVIMAACT 302

Query: 34  VGEAVEHEVKV 2
           VG+A+E E+++
Sbjct: 303 VGDAIEQEIRI 313


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Brachypodium
           distachyon]
          Length = 992

 Score =  129 bits (325), Expect = 5e-28
 Identities = 68/131 (51%), Positives = 87/131 (66%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   LR+RQV+ ETEAW +A +EY++L  +M    + PNLPYVKS FLGWF PLR+ I A
Sbjct: 151 KYAALRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIA 210

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
                Q   G R     H  Y  MLP DM+AVITMHK+  LLM+G  +  SVRV+ AA +
Sbjct: 211 ----EQELVGERGARASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDG-SVRVIQAACQ 265

Query: 34  VGEAVEHEVKV 2
           +GEA+EHEV++
Sbjct: 266 IGEAIEHEVRI 276


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
           putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
           DNA-directed RNA polymerase 2, chloroplast/mitochondrial
           precursor, putative [Ricinus communis]
          Length = 997

 Score =  129 bits (325), Expect = 5e-28
 Identities = 76/192 (39%), Positives = 108/192 (56%), Gaps = 12/192 (6%)
 Frame = -3

Query: 541 STTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDRRKEGQ------- 383
           +T    V++S DE   S   +L    E +   +H K+   H      +++  +       
Sbjct: 89  ATAAAQVIASTDESDFSGCDELQEQIEEIN--KHHKKMDAHFRQQQQQQQRKKTIAGMGI 146

Query: 382 -----LRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAID 218
                L++RQ+K ETEAW +A  EY++L  +M    + PNLPY+KS FLGWF PLR+AI 
Sbjct: 147 GKYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAI- 205

Query: 217 ALQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAM 38
             ++   ++E   K+ HG   Y   LP DM+AVITMHK+  LLM+    N SVRVV AA 
Sbjct: 206 -AKEQELSREKNNKLSHG--PYFDALPADMMAVITMHKLMGLLMTTNGGNGSVRVVQAAC 262

Query: 37  KVGEAVEHEVKV 2
            VGEA+EHE ++
Sbjct: 263 AVGEAIEHEARI 274


>ref|XP_004297187.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like
           [Fragaria vesca subsp. vesca]
          Length = 997

 Score =  129 bits (323), Expect = 9e-28
 Identities = 74/181 (40%), Positives = 106/181 (58%), Gaps = 1/181 (0%)
 Frame = -3

Query: 541 STTLEPVVSSEDEV-KDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDRRKEGQLRRRQV 365
           +++ E + S+++E   +     L  +    + E+  KQ P          K G LRRRQV
Sbjct: 82  ASSAEAIASTDEESGSEEIQVMLEDLVRECKVEDDSKQ-PKRLVSGMGAGKYGILRRRQV 140

Query: 364 KTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQKNHQAKEG 185
           K ETEAW  A  EY++L  +M    + PNLPY+KS FLGWF PLR+AI A  ++   K+G
Sbjct: 141 KLETEAWEDAANEYQELLSDMCQQKLAPNLPYIKSLFLGWFEPLRDAIAAEPESWAGKKG 200

Query: 184 RRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGEAVEHEVK 5
             +    H  Y  +LPPD +AVITMHK+  LLM+      +V+VV AA  +GEA+E+EV+
Sbjct: 201 NCR--PSHAPYFELLPPDKMAVITMHKLMGLLMTNSGGVGAVKVVQAACAIGEAIENEVR 258

Query: 4   V 2
           +
Sbjct: 259 I 259


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  129 bits (323), Expect = 9e-28
 Identities = 75/187 (40%), Positives = 112/187 (59%)
 Frame = -3

Query: 562 NVFRASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDRRKEGQ 383
           +V  A  ST +E  VS  DEV++   +         + ++  +Q+         + K   
Sbjct: 132 SVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRTRQNRAR---GMGQGKYHM 188

Query: 382 LRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQKN 203
           L+RRQ+K ETEAW +A +EY++L  +M    + PNLPY+KS FLGWF PLRNAID  ++ 
Sbjct: 189 LKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAID--KEQ 246

Query: 202 HQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGEA 23
              ++G+ K  +    Y+  LP DM++VITMHK+  LLM+G  E+ + RVV AA  +GEA
Sbjct: 247 DLCRKGKNKTAYA--PYIDQLPADMMSVITMHKLMGLLMTG-GEHGTCRVVAAACTIGEA 303

Query: 22  VEHEVKV 2
           +E EV++
Sbjct: 304 IEQEVRI 310


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score =  129 bits (323), Expect = 9e-28
 Identities = 67/127 (52%), Positives = 86/127 (67%)
 Frame = -3

Query: 382 LRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQKN 203
           LR+RQ++ ETEAW +A +EY++L  +M    + PNLPYVKS FLGWF PLR+ I A    
Sbjct: 27  LRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIA---- 82

Query: 202 HQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGEA 23
            Q   G R     H  Y  MLP DM+AVITMHK+  LLM+G  +  SVRV+ AA ++GEA
Sbjct: 83  EQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDG-SVRVIQAACQIGEA 141

Query: 22  VEHEVKV 2
           VEHEV++
Sbjct: 142 VEHEVRI 148


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
           gi|550332836|gb|EEE88785.2| hypothetical protein
           POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score =  128 bits (322), Expect = 1e-27
 Identities = 65/127 (51%), Positives = 87/127 (68%)
 Frame = -3

Query: 382 LRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDALQKN 203
           L+RRQ+K ETEAW +A +EY+++ E+M    + PNLPYVKS FLGWF PLR+AI A Q  
Sbjct: 145 LKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQ-- 202

Query: 202 HQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMKVGEA 23
              +  +R +   H  +   LP DM+AVITMHK+  LLM+G   + S+RVV AA  VGEA
Sbjct: 203 ---ELCKRNLRVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEA 259

Query: 22  VEHEVKV 2
           +EHE ++
Sbjct: 260 IEHEGRI 266


>ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Brachypodium distachyon]
          Length = 943

 Score =  128 bits (322), Expect = 1e-27
 Identities = 67/133 (50%), Positives = 90/133 (67%)
 Frame = -3

Query: 400 RRKEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAI 221
           R +  +LR+RQVK ETEAW +A EEY++L  EM   N+ P+LPYVKS FLGWF PLR+AI
Sbjct: 105 RAEHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPSLPYVKSLFLGWFEPLRDAI 164

Query: 220 DALQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAA 41
                  Q  + R+++ H + +Y+ +LP + ++VI MHK+  LLMS +    SVRVV AA
Sbjct: 165 ----ARDQEVQRRKRVKHVYAKYLLLLPAEKVSVIVMHKMMGLLMSNKDGCGSVRVVQAA 220

Query: 40  MKVGEAVEHEVKV 2
             +GEAVE E KV
Sbjct: 221 HSIGEAVEREFKV 233


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  128 bits (321), Expect = 2e-27
 Identities = 67/131 (51%), Positives = 88/131 (67%)
 Frame = -3

Query: 394 KEGQLRRRQVKTETEAWRKATEEYKKLTEEMRTSNMTPNLPYVKSQFLGWFHPLRNAIDA 215
           K   LRRRQ+K ETEAW +A +EY++L  +M    + PNLPY+KS FLGWF PLR+ I A
Sbjct: 139 KHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAA 198

Query: 214 LQKNHQAKEGRRKIGHGHEEYMCMLPPDMLAVITMHKITTLLMSGQAENCSVRVVLAAMK 35
            Q     K+G+ +  +    Y   LP DM+AVITMHK+  LLM+G+  N S RVV AA  
Sbjct: 199 EQ--DLCKQGKNRAAYA--PYFDHLPADMMAVITMHKLMGLLMTGEG-NGSARVVQAACH 253

Query: 34  VGEAVEHEVKV 2
           +GEA+EHEV++
Sbjct: 254 IGEAIEHEVRI 264