BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00006273
         (1785 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGH20047.1| CCA1-like protein [Picea abies]                        253   1e-64
gb|EOX95553.1| Homeodomain-like superfamily protein isoform 2 [T...   135   7e-29
gb|EOX95554.1| Homeodomain-like superfamily protein isoform 3 [T...   133   2e-28
ref|XP_002267720.1| PREDICTED: protein LHY-like [Vitis vinifera]      132   6e-28
emb|CAN81352.1| hypothetical protein VITISV_012722 [Vitis vinifera]   131   1e-27
gb|EOX95552.1| Homeodomain-like superfamily protein isoform 1 [T...   130   2e-27
ref|XP_006384118.1| hypothetical protein POPTR_0004s07270g [Popu...   127   1e-26
ref|XP_002305260.2| hypothetical protein POPTR_0004s07270g [Popu...   127   1e-26
gb|EOX95556.1| Homeodomain-like superfamily protein isoform 5 [T...   127   1e-26
ref|XP_003553057.1| PREDICTED: protein LHY [Glycine max]              127   1e-26
dbj|BAI39992.1| circadian clock-associated protein 1b [Physcomit...   127   1e-26
ref|XP_002526589.1| DNA binding protein, putative [Ricinus commu...   127   1e-26
ref|XP_001767701.1| cca1b circadian clock protein CCA1b [Physcom...   127   1e-26
ref|XP_006659144.1| PREDICTED: protein CCA1-like isoform X8 [Ory...   127   2e-26
ref|XP_006659137.1| PREDICTED: protein CCA1-like isoform X1 [Ory...   127   2e-26
dbj|BAC99516.1| putative LHY protein [Oryza sativa Japonica Group]    127   2e-26
gb|EEC82927.1| hypothetical protein OsI_27882 [Oryza sativa Indi...   127   2e-26
ref|NP_001061032.1| Os08g0157600 [Oryza sativa Japonica Group] g...   127   2e-26
gb|EXB80254.1| Myb-like protein G [Morus notabilis]                   126   3e-26
ref|XP_004972798.1| PREDICTED: protein LHY-like isoform X1 [Seta...   126   3e-26

>gb|AGH20047.1| CCA1-like protein [Picea abies]
          Length = 731

 Score =  253 bits (647), Expect = 1e-64
 Identities = 178/463 (38%), Positives = 242/463 (52%), Gaps = 31/463 (6%)
 Frame = +2

Query: 236  GESVSSDNMLASS------KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHI 397
            G+S S+ N + SS      KVRKPYTITKQRERWSEEEHLKFLEAL++YGRAWRRIEEHI
Sbjct: 14   GDSNSNSNSICSSGDELAAKVRKPYTITKQRERWSEEEHLKFLEALKMYGRAWRRIEEHI 73

Query: 398  GTKTAVQIRSHAQKFFSKLVKGTTSRG-TSADKVEDIEIXXXXXXXXXXXXXXXXAASLS 574
            GTKTAVQIRSHAQKFFSKLV+G++S+G +S ++ +DI+I                A   +
Sbjct: 74   GTKTAVQIRSHAQKFFSKLVRGSSSKGVSSTERTQDIDIPPPRPKRKPRHPYPRKAVG-T 132

Query: 575  ASPIGSQVTK--DVTXXXXXXXXXXXXGDNPEKRTGFVPYNPTPPLPSHSN--EMKMESP 742
            A   GS   K  DV             GD P KR  F  +N    L + +N  E+KMESP
Sbjct: 133  AHQSGSPAIKEGDVLPSVVSSVPLLSLGDGPCKRARFDRHNAKTRLCNSNNGQEVKMESP 192

Query: 743  DTSCNTSGNSLLSLKLFGRTMLVPTLDNSSDSLSPKSIFHDNNGAFRKVAPLNREKCFAK 922
              +     +S LSLKLFG+TMLV T+D   ++ S +    +N G F +  P+ +E    K
Sbjct: 193  RLN-----SSPLSLKLFGQTMLVSTID-GPNTFSTEPAVSNNQGDFHEFVPVQQETSPLK 246

Query: 923  DENEDKYV---XXXXXXXXXXXQETIVLTDLALNSTVSSNFKQCKKEQDEDPAASGE--- 1084
             + +++ +                T  +  +  + +VS+  K C+++ D D   S E   
Sbjct: 247  IKAKNQILDDGNEILHSYSLKSHTTAAVNSVLHSGSVSTADKDCREKTDSDEQISSELDT 306

Query: 1085 ---------SSPS----YPRHVPVQCVVDGTQREIVQDVDKDWLHMSCASSSHSPTNQFN 1225
                      SPS    YPRHV VQ VVDG   E V +V    ++M+  + S    +  N
Sbjct: 307  NSSCLTRNQESPSIFSGYPRHVSVQRVVDGAVSENVNEV----VNMTPLAHSPLAMSMSN 362

Query: 1226 NNPASNPDAVTS-WQNVLSAVFPWGQMQQSDPSIXXXXXXXXXXXXXXWWSLYGVNPPLY 1402
            N  + + D + S W +  S VFPW QMQ  D ++              WWSLYG  P L 
Sbjct: 363  NTSSLSKDEIMSPWPSTFSPVFPWVQMQNGDTAVAEAVAVATVAAASAWWSLYGAVPSLL 422

Query: 1403 HPTVLSEAEASKNLNANEGKPETEQPGSNPNDTREIETEQEQL 1531
            HP + S A A++N+ ++  K ET +     + +   E E E L
Sbjct: 423  HPRMFSGATAAENI-SSVCKAETVRGVREQSQSNTTEREGETL 464


>gb|EOX95553.1| Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]
            gi|508703659|gb|EOX95555.1| Homeodomain-like superfamily
            protein isoform 2 [Theobroma cacao]
            gi|508703661|gb|EOX95557.1| Homeodomain-like superfamily
            protein isoform 2 [Theobroma cacao]
          Length = 668

 Score =  135 bits (339), Expect = 7e-29
 Identities = 137/456 (30%), Positives = 200/456 (43%), Gaps = 31/456 (6%)
 Frame = +2

Query: 275  KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKL 454
            K RKPYTITKQRERW+EEEH +FLEAL+LYGRAW+RIEEHIGTKTAVQIRSHAQKFFSKL
Sbjct: 13   KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKL 72

Query: 455  VKGTTSRGTSADKVEDIEIXXXXXXXXXXXXXXXXAASLSASPIGSQVTKDVTXXXXXXX 634
             K   ++G    +  DIEI                  + + + +G++  K  T       
Sbjct: 73   EKEALAKGVPIGQALDIEIPPPRPKRKPSNPYPRKTGAATTAQVGAKDGKSETPLSSLRC 132

Query: 635  XXXXXGDNPEKRTGFVPYNPTPPLPSHSNE--MKMESPDTSCNTSGNSLLSLKLFGRTML 808
                      K+   +   P P  P+   +     ++ D SC    + +++L        
Sbjct: 133  ----------KQVLDLEKEPLPERPNGDEKPINLKDNQDDSC----SEVVTLLHEANCSS 178

Query: 809  VPTLDNSSDSLSPKSIFHDNNGAFRKVAPLNREKCFAKDENEDKYVXXXXXXXXXXXQET 988
            V +++ +S    P S    N+  FR+  P  +E    +D    K                
Sbjct: 179  VSSVNKNS---IPTSAALRNSCTFREFVPSLKET--IQDNGTSK---------------- 217

Query: 989  IVLTDLALNSTVSSNFKQCKKEQDED---PAASGESSPSYPRHVPVQCVVDGTQREIVQD 1159
               ++L  + T      Q +K+ D D    A   +++ +YPRHV V  V+DG        
Sbjct: 218  --ASNLDNSCTSHEKAAQGQKKDDVDGGLRADETQATQNYPRHVAVH-VLDG-------- 266

Query: 1160 VDKDWLHMSCASSSHSPTNQFNNNPAS---NPD-------AVTSW--QNVLSAV------ 1285
                    S  +++ + T   NN P S   NP        A T W   NV S+       
Sbjct: 267  --------SLGTAASATTEHQNNAPRSTHQNPAAHAAASFAATFWPYANVDSSADSPACS 318

Query: 1286 ---FPWGQMQQSDPSIXXXXXXXXXXXXXXWWSLYGVNP---PLY--HPTVLSEAEASKN 1441
               FP  QM  + PS+              WW+ +G+ P   PL+      L+ A A   
Sbjct: 319  QGGFPSRQMNPA-PSM-AAIAAATVAAATAWWAAHGLLPLCAPLHTGFTCALASAAAVPP 376

Query: 1442 LNANEGKPETEQPGSNPNDTREIETEQEQLPPDELE 1549
            ++ NE  P T+    + ND +++  + +QL P+  E
Sbjct: 377  MD-NEQAPATKMERKDNND-QDLSMQDQQLDPEYSE 410


>gb|EOX95554.1| Homeodomain-like superfamily protein isoform 3 [Theobroma cacao]
            gi|508703662|gb|EOX95558.1| Homeodomain-like superfamily
            protein isoform 3 [Theobroma cacao]
            gi|508703663|gb|EOX95559.1| Homeodomain-like superfamily
            protein isoform 3 [Theobroma cacao]
          Length = 700

 Score =  133 bits (335), Expect = 2e-28
 Identities = 140/472 (29%), Positives = 201/472 (42%), Gaps = 47/472 (9%)
 Frame = +2

Query: 275  KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKL 454
            K RKPYTITKQRERW+EEEH +FLEAL+LYGRAW+RIEEHIGTKTAVQIRSHAQKFFSKL
Sbjct: 13   KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKL 72

Query: 455  VKGTTSRGTSADKVEDIEIXXXXXXXXXXXXXXXXAASLSASPIGSQVTKDVTXXXXXXX 634
             K   ++G    +  DIEI                  + + + +G++  K  T       
Sbjct: 73   EKEALAKGVPIGQALDIEIPPPRPKRKPSNPYPRKTGAATTAQVGAKDGKSETPLSSLRC 132

Query: 635  XXXXXGDNPEKRTGFVPYNPTPPLPSHSNE--MKMESPDTSCNTSGNSLLSLKLFGRTML 808
                      K+   +   P P  P+   +     ++ D SC    + +++L        
Sbjct: 133  ----------KQVLDLEKEPLPERPNGDEKPINLKDNQDDSC----SEVVTLLHEANCSS 178

Query: 809  VPTLDNSSDSLSPKSIFHDNNGAFRKVAPLNREKCFAKDENEDKYVXXXXXXXXXXXQET 988
            V +++ +S    P S    N+  FR+  P  +E    +D    K                
Sbjct: 179  VSSVNKNS---IPTSAALRNSCTFREFVPSLKET--IQDNGTSK---------------- 217

Query: 989  IVLTDLALNSTVSSNFKQCKKEQDED---PAASGESSPSYPRHVPVQCVVDGTQREIVQD 1159
               ++L  + T      Q +K+ D D    A   +++ +YPRHV V  V+DG+     Q+
Sbjct: 218  --ASNLDNSCTSHEKAAQGQKKDDVDGGLRADETQATQNYPRHVAVH-VLDGSLGTGAQN 274

Query: 1160 VDKDWLHMSCA----SSSHSPTNQFNNNPAS---------------NPD-------AVTS 1261
               D              H  TN F N  AS               NP        A T 
Sbjct: 275  PSLDMPFQDSVFHPMGDVHGQTNLFANPAASATTEHQNNAPRSTHQNPAAHAAASFAATF 334

Query: 1262 W--QNVLSAV---------FPWGQMQQSDPSIXXXXXXXXXXXXXXWWSLYGVNP---PL 1399
            W   NV S+          FP  QM  + PS+              WW+ +G+ P   PL
Sbjct: 335  WPYANVDSSADSPACSQGGFPSRQMNPA-PSM-AAIAAATVAAATAWWAAHGLLPLCAPL 392

Query: 1400 Y--HPTVLSEAEASKNLNANEGKPETEQPGSNPNDTREIETEQEQLPPDELE 1549
            +      L+ A A   ++ NE  P T+    + ND +++  + +QL P+  E
Sbjct: 393  HTGFTCALASAAAVPPMD-NEQAPATKMERKDNND-QDLSMQDQQLDPEYSE 442


>ref|XP_002267720.1| PREDICTED: protein LHY-like [Vitis vinifera]
          Length = 771

 Score =  132 bits (331), Expect = 6e-28
 Identities = 113/353 (32%), Positives = 158/353 (44%), Gaps = 21/353 (5%)
 Frame = +2

Query: 275  KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKL 454
            K RKPYTITKQRERW+EEEH +FLEAL+LYGRAW+RIEEHIGTKTAVQIRSHAQKFFSKL
Sbjct: 13   KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKL 72

Query: 455  VKGTTSRGTSADKVEDIEIXXXXXXXXXXXXXXXXAASLSASPIGSQVTKDVTXXXXXXX 634
             K    +G    +  DIEI                     A+P     TKD         
Sbjct: 73   EKEALVKGVPIGQAIDIEIPPPRPKRKPSNPYPRKTGV--AAPTLQAGTKD------GKL 124

Query: 635  XXXXXGDNPEKRTGFVPYNPTPPLPSHSNEMKMESPDTSCNTSGNSLLSLKLFGRTMLVP 814
                   +P K+   +  +P P  PS   +   E+ +       N      LF       
Sbjct: 125  LASVSSSHPGKQILDLEKDPLPERPSGDEKPGNENENQD---EDNCSEVFTLFQEAPCTS 181

Query: 815  TLDNSSDSLSPKSIFHDNNGAFRKVAPLNREKCFAKDENEDKYVXXXXXXXXXXX----- 979
                + +S+ P  +   N+  FR+  PL +E    +DE  + Y+                
Sbjct: 182  MSSANKNSI-PTPVPLRNSCTFREFVPLMKEGS-NQDETNESYITVEPKGNQKLDKPDFR 239

Query: 980  ---QETIVLTDLALNSTVSSNFKQCKKEQDEDPAASG----------ESSPSYPRHVPVQ 1120
               Q++ +     L ++  S+ K  + E+ ++P+ S           +++ ++PRHVPV 
Sbjct: 240  QKAQDSGMSKASNLENSHPSHEKLVQAEKTDEPSQSENFGSQPKNEMQAAQNFPRHVPVH 299

Query: 1121 CVVDGTQREIVQDVDKDWLH---MSCASSSHSPTNQFNNNPASNPDAVTSWQN 1270
             V+DG+     Q    +  +   +      H   N F N  AS   A T  QN
Sbjct: 300  -VLDGSLGTCTQAPSSEMTYGESLVHQIGIHGHPNLFQNPAAS---AATEHQN 348


>emb|CAN81352.1| hypothetical protein VITISV_012722 [Vitis vinifera]
          Length = 857

 Score =  131 bits (329), Expect = 1e-27
 Identities = 113/357 (31%), Positives = 159/357 (44%), Gaps = 21/357 (5%)
 Frame = +2

Query: 263  LASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKF 442
            L   + RKPYTITKQRERW+EEEH +FLEAL+LYGRAW+RIEEHIGTKTAVQIRSHAQKF
Sbjct: 95   LGQHQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKF 154

Query: 443  FSKLVKGTTSRGTSADKVEDIEIXXXXXXXXXXXXXXXXAASLSASPIGSQVTKDVTXXX 622
            FSKL K    +G    +  DIEI                     A+P     TKD     
Sbjct: 155  FSKLEKEALVKGVPIGQAIDIEIPPPRPKRKPSNPYPRKTGV--AAPTLQAGTKD----- 207

Query: 623  XXXXXXXXXGDNPEKRTGFVPYNPTPPLPSHSNEMKMESPDTSCNTSGNSLLSLKLFGRT 802
                       +P K+   +  +P P  PS   +   E+ +       N      LF   
Sbjct: 208  -GKLLASVSSXHPGKQILDLEKDPLPERPSGDEKPGNENENQD---EDNCSEVFTLFQEA 263

Query: 803  MLVPTLDNSSDSLSPKSIFHDNNGAFRKVAPLNREKCFAKDENEDKYVXXXXXXXXXXX- 979
                    + +S+ P  +   N+  FR+  PL +E    +DE  + Y+            
Sbjct: 264  PCTSMSSANKNSI-PTPVPLRNSCTFREFVPLMKEGS-NQDETNESYITVEPKGNQKLDK 321

Query: 980  -------QETIVLTDLALNSTVSSNFKQCKKEQDEDPAASG----------ESSPSYPRH 1108
                   Q++ +     L ++  S+ K  + E+ ++P+ S           +++ ++PRH
Sbjct: 322  PDFRQKAQDSGMSKASNLENSHPSHEKLVQAEKTDEPSQSENFGSQPKNEMQAAQNFPRH 381

Query: 1109 VPVQCVVDGTQREIVQDVDKDWLH---MSCASSSHSPTNQFNNNPASNPDAVTSWQN 1270
            VPV  V+DG+     Q    +  +   +      H   N F N  AS   A T  QN
Sbjct: 382  VPVH-VLDGSLGTCTQAPSSEMTYGESLVHQIGIHGHPNLFQNPAAS---AATEHQN 434


>gb|EOX95552.1| Homeodomain-like superfamily protein isoform 1 [Theobroma cacao]
            gi|508703666|gb|EOX95562.1| Homeodomain-like superfamily
            protein isoform 1 [Theobroma cacao]
            gi|508703667|gb|EOX95563.1| Homeodomain-like superfamily
            protein isoform 1 [Theobroma cacao]
          Length = 739

 Score =  130 bits (326), Expect = 2e-27
 Identities = 111/341 (32%), Positives = 154/341 (45%), Gaps = 9/341 (2%)
 Frame = +2

Query: 275  KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKL 454
            K RKPYTITKQRERW+EEEH +FLEAL+LYGRAW+RIEEHIGTKTAVQIRSHAQKFFSKL
Sbjct: 13   KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKL 72

Query: 455  VKGTTSRGTSADKVEDIEIXXXXXXXXXXXXXXXXAASLSASPIGSQVTKDVTXXXXXXX 634
             K   ++G    +  DIEI                  + + + +G++  K  T       
Sbjct: 73   EKEALAKGVPIGQALDIEIPPPRPKRKPSNPYPRKTGAATTAQVGAKDGKSETPLSSLRC 132

Query: 635  XXXXXGDNPEKRTGFVPYNPTPPLPSHSNE--MKMESPDTSCNTSGNSLLSLKLFGRTML 808
                      K+   +   P P  P+   +     ++ D SC    + +++L        
Sbjct: 133  ----------KQVLDLEKEPLPERPNGDEKPINLKDNQDDSC----SEVVTLLHEANCSS 178

Query: 809  VPTLDNSSDSLSPKSIFHDNNGAFRKVAPLNREKCFAKDENEDKYVXXXXXXXXXXXQET 988
            V +++ +S    P S    N+  FR+  P  +E    +D    K                
Sbjct: 179  VSSVNKNS---IPTSAALRNSCTFREFVPSLKET--IQDNGTSK---------------- 217

Query: 989  IVLTDLALNSTVSSNFKQCKKEQDED---PAASGESSPSYPRHVPVQCVVDGTQREIVQD 1159
               ++L  + T      Q +K+ D D    A   +++ +YPRHV V  V+DG+     Q+
Sbjct: 218  --ASNLDNSCTSHEKAAQGQKKDDVDGGLRADETQATQNYPRHVAVH-VLDGSLGTGAQN 274

Query: 1160 VDKDWLHMSCA----SSSHSPTNQFNNNPASNPDAVTSWQN 1270
               D              H  TN F N  AS   A T  QN
Sbjct: 275  PSLDMPFQDSVFHPMGDVHGQTNLFANPAAS---ATTEHQN 312


>ref|XP_006384118.1| hypothetical protein POPTR_0004s07270g [Populus trichocarpa]
           gi|550340520|gb|ERP61915.1| hypothetical protein
           POPTR_0004s07270g [Populus trichocarpa]
          Length = 485

 Score =  127 bits (320), Expect = 1e-26
 Identities = 63/81 (77%), Positives = 70/81 (86%)
 Frame = +2

Query: 269 SSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFS 448
           S K RKPYTITKQRERW+EEEH KFLEAL+LYGRAWRRIEEH+GTKTAVQIRSHAQKFFS
Sbjct: 45  SPKARKPYTITKQRERWTEEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFS 104

Query: 449 KLVKGTTSRGTSADKVEDIEI 511
           K+V+   S G++   VE IEI
Sbjct: 105 KVVR--ESGGSNTSSVEPIEI 123


>ref|XP_002305260.2| hypothetical protein POPTR_0004s07270g [Populus trichocarpa]
           gi|550340519|gb|EEE85771.2| hypothetical protein
           POPTR_0004s07270g [Populus trichocarpa]
          Length = 429

 Score =  127 bits (320), Expect = 1e-26
 Identities = 63/81 (77%), Positives = 70/81 (86%)
 Frame = +2

Query: 269 SSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFS 448
           S K RKPYTITKQRERW+EEEH KFLEAL+LYGRAWRRIEEH+GTKTAVQIRSHAQKFFS
Sbjct: 45  SPKARKPYTITKQRERWTEEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFS 104

Query: 449 KLVKGTTSRGTSADKVEDIEI 511
           K+V+   S G++   VE IEI
Sbjct: 105 KVVR--ESGGSNTSSVEPIEI 123


>gb|EOX95556.1| Homeodomain-like superfamily protein isoform 5 [Theobroma cacao]
            gi|508703664|gb|EOX95560.1| Homeodomain-like superfamily
            protein isoform 5 [Theobroma cacao]
            gi|508703665|gb|EOX95561.1| Homeodomain-like superfamily
            protein isoform 5 [Theobroma cacao]
          Length = 707

 Score =  127 bits (320), Expect = 1e-26
 Identities = 107/344 (31%), Positives = 155/344 (45%), Gaps = 5/344 (1%)
 Frame = +2

Query: 275  KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKL 454
            K RKPYTITKQRERW+EEEH +FLEAL+LYGRAW+RIEEHIGTKTAVQIRSHAQKFFSKL
Sbjct: 13   KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKL 72

Query: 455  VKGTTSRGTSADKVEDIEIXXXXXXXXXXXXXXXXAASLSASPIGSQVTKDVTXXXXXXX 634
             K   ++G    +  DIEI                  + + + +G++  K  T       
Sbjct: 73   EKEALAKGVPIGQALDIEIPPPRPKRKPSNPYPRKTGAATTAQVGAKDGKSETPLSSLRC 132

Query: 635  XXXXXGDNPEKRTGFVPYNPTPPLPSHSNE--MKMESPDTSCNTSGNSLLSLKLFGRTML 808
                      K+   +   P P  P+   +     ++ D SC    + +++L        
Sbjct: 133  ----------KQVLDLEKEPLPERPNGDEKPINLKDNQDDSC----SEVVTLLHEANCSS 178

Query: 809  VPTLDNSSDSLSPKSIFHDNNGAFRKVAPLNREKCFAKDENEDKYVXXXXXXXXXXXQET 988
            V +++ +S    P S    N+  FR+  P  +E    +D    K                
Sbjct: 179  VSSVNKNS---IPTSAALRNSCTFREFVPSLKET--IQDNGTSK---------------- 217

Query: 989  IVLTDLALNSTVSSNFKQCKKEQDED---PAASGESSPSYPRHVPVQCVVDGTQREIVQD 1159
               ++L  + T      Q +K+ D D    A   +++ +YPRHV V  V+DG        
Sbjct: 218  --ASNLDNSCTSHEKAAQGQKKDDVDGGLRADETQATQNYPRHVAVH-VLDG-------- 266

Query: 1160 VDKDWLHMSCASSSHSPTNQFNNNPASNPDAVTSWQNVLSAVFP 1291
                    S  +++ + T   NN P S   A  ++    + V P
Sbjct: 267  --------SLGTAASATTEHQNNAPRSTHQAFPTFHPPFTHVCP 302


>ref|XP_003553057.1| PREDICTED: protein LHY [Glycine max]
          Length = 361

 Score =  127 bits (320), Expect = 1e-26
 Identities = 62/79 (78%), Positives = 70/79 (88%)
 Frame = +2

Query: 275 KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKL 454
           KVRKPYTITKQRERW++EEH KFLEAL+LYGRAWRRIEEH+GTKTAVQIRSHAQKFFSKL
Sbjct: 49  KVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKL 108

Query: 455 VKGTTSRGTSADKVEDIEI 511
           ++  T  G + + VE IEI
Sbjct: 109 LRDPT--GNNTNTVESIEI 125


>dbj|BAI39992.1| circadian clock-associated protein 1b [Physcomitrella patens]
          Length = 931

 Score =  127 bits (320), Expect = 1e-26
 Identities = 63/83 (75%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
 Frame = +2

Query: 266 ASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFF 445
           AS+KVRKPYTITKQRERW+EEEH KFLEAL+LYGRAWRRIEEHIGTKTAVQIRSHAQKFF
Sbjct: 15  ASTKVRKPYTITKQRERWTEEEHQKFLEALKLYGRAWRRIEEHIGTKTAVQIRSHAQKFF 74

Query: 446 SKLVKGTTS-RGTSADKVEDIEI 511
           SK+ +  T+ +GT     + I+I
Sbjct: 75  SKIERDVTAGQGTETGVAQVIDI 97


>ref|XP_002526589.1| DNA binding protein, putative [Ricinus communis]
           gi|223534083|gb|EEF35801.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 468

 Score =  127 bits (320), Expect = 1e-26
 Identities = 64/81 (79%), Positives = 70/81 (86%)
 Frame = +2

Query: 269 SSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFS 448
           S K RKPYTITKQRERW+EEEH KFLEAL+LYGRAWRRIEEH+GTKTAVQIRSHAQKFFS
Sbjct: 26  SPKARKPYTITKQRERWTEEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFS 85

Query: 449 KLVKGTTSRGTSADKVEDIEI 511
           K+V+  +   TSA  VE IEI
Sbjct: 86  KVVREGSGSSTSA--VEPIEI 104


>ref|XP_001767701.1| cca1b circadian clock protein CCA1b [Physcomitrella patens]
           gi|162681021|gb|EDQ67452.1| cca1b circadian clock
           protein CCA1b [Physcomitrella patens]
          Length = 142

 Score =  127 bits (320), Expect = 1e-26
 Identities = 63/83 (75%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
 Frame = +2

Query: 266 ASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFF 445
           AS+KVRKPYTITKQRERW+EEEH KFLEAL+LYGRAWRRIEEHIGTKTAVQIRSHAQKFF
Sbjct: 40  ASTKVRKPYTITKQRERWTEEEHQKFLEALKLYGRAWRRIEEHIGTKTAVQIRSHAQKFF 99

Query: 446 SKLVKGTTS-RGTSADKVEDIEI 511
           SK+ +  T+ +GT     + I+I
Sbjct: 100 SKIERDVTAGQGTETGVAQVIDI 122


>ref|XP_006659144.1| PREDICTED: protein CCA1-like isoform X8 [Oryza brachyantha]
           gi|573953750|ref|XP_006659145.1| PREDICTED: protein
           CCA1-like isoform X9 [Oryza brachyantha]
          Length = 718

 Score =  127 bits (319), Expect = 2e-26
 Identities = 61/89 (68%), Positives = 72/89 (80%)
 Frame = +2

Query: 245 VSSDNMLASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIR 424
           ++S    A  KVRKPYTITKQRERW+E EH +FLEAL+LYGRAW+RIEEH+GTKTAVQIR
Sbjct: 3   INSSGEEAVVKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIR 62

Query: 425 SHAQKFFSKLVKGTTSRGTSADKVEDIEI 511
           SHAQKFF+KL K   + GTS  +  DI+I
Sbjct: 63  SHAQKFFTKLEKEAINNGTSPGQAHDIDI 91


>ref|XP_006659137.1| PREDICTED: protein CCA1-like isoform X1 [Oryza brachyantha]
           gi|573953736|ref|XP_006659138.1| PREDICTED: protein
           CCA1-like isoform X2 [Oryza brachyantha]
           gi|573953738|ref|XP_006659139.1| PREDICTED: protein
           CCA1-like isoform X3 [Oryza brachyantha]
           gi|573953740|ref|XP_006659140.1| PREDICTED: protein
           CCA1-like isoform X4 [Oryza brachyantha]
           gi|573953742|ref|XP_006659141.1| PREDICTED: protein
           CCA1-like isoform X5 [Oryza brachyantha]
           gi|573953744|ref|XP_006659142.1| PREDICTED: protein
           CCA1-like isoform X6 [Oryza brachyantha]
           gi|573953746|ref|XP_006659143.1| PREDICTED: protein
           CCA1-like isoform X7 [Oryza brachyantha]
          Length = 724

 Score =  127 bits (319), Expect = 2e-26
 Identities = 61/89 (68%), Positives = 72/89 (80%)
 Frame = +2

Query: 245 VSSDNMLASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIR 424
           ++S    A  KVRKPYTITKQRERW+E EH +FLEAL+LYGRAW+RIEEH+GTKTAVQIR
Sbjct: 3   INSSGEEAVVKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIR 62

Query: 425 SHAQKFFSKLVKGTTSRGTSADKVEDIEI 511
           SHAQKFF+KL K   + GTS  +  DI+I
Sbjct: 63  SHAQKFFTKLEKEAINNGTSPGQAHDIDI 91


>dbj|BAC99516.1| putative LHY protein [Oryza sativa Japonica Group]
          Length = 725

 Score =  127 bits (318), Expect = 2e-26
 Identities = 61/89 (68%), Positives = 72/89 (80%)
 Frame = +2

Query: 245 VSSDNMLASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIR 424
           ++S    A  KVRKPYTITKQRERW+E EH +FLEAL+LYGRAW+RIEEH+GTKTAVQIR
Sbjct: 3   INSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQIR 62

Query: 425 SHAQKFFSKLVKGTTSRGTSADKVEDIEI 511
           SHAQKFF+KL K   + GTS  +  DI+I
Sbjct: 63  SHAQKFFTKLEKEAINNGTSPGQAHDIDI 91


>gb|EEC82927.1| hypothetical protein OsI_27882 [Oryza sativa Indica Group]
          Length = 719

 Score =  127 bits (318), Expect = 2e-26
 Identities = 61/89 (68%), Positives = 72/89 (80%)
 Frame = +2

Query: 245 VSSDNMLASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIR 424
           ++S    A  KVRKPYTITKQRERW+E EH +FLEAL+LYGRAW+RIEEH+GTKTAVQIR
Sbjct: 3   INSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQIR 62

Query: 425 SHAQKFFSKLVKGTTSRGTSADKVEDIEI 511
           SHAQKFF+KL K   + GTS  +  DI+I
Sbjct: 63  SHAQKFFTKLEKEAINNGTSPGQAHDIDI 91


>ref|NP_001061032.1| Os08g0157600 [Oryza sativa Japonica Group]
           gi|113623001|dbj|BAF22946.1| Os08g0157600 [Oryza sativa
           Japonica Group] gi|222639944|gb|EEE68076.1| hypothetical
           protein OsJ_26106 [Oryza sativa Japonica Group]
          Length = 719

 Score =  127 bits (318), Expect = 2e-26
 Identities = 61/89 (68%), Positives = 72/89 (80%)
 Frame = +2

Query: 245 VSSDNMLASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIR 424
           ++S    A  KVRKPYTITKQRERW+E EH +FLEAL+LYGRAW+RIEEH+GTKTAVQIR
Sbjct: 3   INSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQIR 62

Query: 425 SHAQKFFSKLVKGTTSRGTSADKVEDIEI 511
           SHAQKFF+KL K   + GTS  +  DI+I
Sbjct: 63  SHAQKFFTKLEKEAINNGTSPGQAHDIDI 91


>gb|EXB80254.1| Myb-like protein G [Morus notabilis]
          Length = 475

 Score =  126 bits (317), Expect = 3e-26
 Identities = 63/92 (68%), Positives = 75/92 (81%), Gaps = 5/92 (5%)
 Frame = +2

Query: 251 SDNML-----ASSKVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAV 415
           SDN +      + KVRKPYTITKQRE+W+EEEH KFLEAL+LYGR WR+IEEH+GTKTAV
Sbjct: 36  SDNQMNEIYDTAPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAV 95

Query: 416 QIRSHAQKFFSKLVKGTTSRGTSADKVEDIEI 511
           QIRSHAQKFFSK+V+G+T  GT    ++ IEI
Sbjct: 96  QIRSHAQKFFSKVVRGST--GTVESSIKRIEI 125


>ref|XP_004972798.1| PREDICTED: protein LHY-like isoform X1 [Setaria italica]
           gi|514793380|ref|XP_004972799.1| PREDICTED: protein
           LHY-like isoform X2 [Setaria italica]
          Length = 747

 Score =  126 bits (316), Expect = 3e-26
 Identities = 59/79 (74%), Positives = 68/79 (86%)
 Frame = +2

Query: 275 KVRKPYTITKQRERWSEEEHLKFLEALRLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKL 454
           KVRKPYTITKQRERW+E EH +FLEAL+LYGRAW+RIEEH+GTKTAVQIRSHAQKFF+KL
Sbjct: 40  KVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKL 99

Query: 455 VKGTTSRGTSADKVEDIEI 511
            K   + GTS  +  DI+I
Sbjct: 100 EKEAMNNGTSPGQAHDIDI 118