BLASTX nr result
ID: Ephedra28_contig00006042
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00006042
(2290 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001777721.1| predicted protein [Physcomitrella patens] gi... 65 2e-07
gb|ABK25455.1| unknown [Picea sitchensis] 62 8e-07
ref|XP_002963662.1| hypothetical protein SELMODRAFT_80248 [Selag... 62 1e-06
ref|XP_006826419.1| hypothetical protein AMTR_s00004p00160120 [A... 62 1e-06
ref|XP_006343613.1| PREDICTED: replication factor C subunit 1-li... 61 2e-06
ref|XP_006343612.1| PREDICTED: replication factor C subunit 1-li... 61 2e-06
gb|EPS67744.1| hypothetical protein M569_07025, partial [Genlise... 61 2e-06
ref|XP_002974750.1| hypothetical protein SELMODRAFT_101808 [Sela... 61 2e-06
ref|XP_006400706.1| hypothetical protein EUTSA_v10012587mg [Eutr... 60 3e-06
ref|XP_006287008.1| hypothetical protein CARUB_v10000156mg [Caps... 60 3e-06
ref|XP_004242616.1| PREDICTED: replication factor C subunit 1-li... 60 3e-06
dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila] 60 3e-06
ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis ... 60 3e-06
ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana] gi... 60 3e-06
>ref|XP_001777721.1| predicted protein [Physcomitrella patens] gi|162670941|gb|EDQ57501.1|
predicted protein [Physcomitrella patens]
Length = 850
Score = 64.7 bits (156), Expect = 2e-07
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = -3
Query: 2171 SGKKSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPLT 1992
S +K+VLIMDEVDG SGGDRGG+ D D YSQ+LK L+NYCLPL
Sbjct: 409 SERKAVLIMDEVDGMSGGDRGGVADLILSIKSSHIPIICICNDKYSQKLKSLINYCLPLP 468
Query: 1991 SNMLTSNHI*RMMEKM 1944
T + + ++++
Sbjct: 469 FRKPTKQQMAKRLQQI 484
>gb|ABK25455.1| unknown [Picea sitchensis]
Length = 550
Score = 62.4 bits (150), Expect = 8e-07
Identities = 31/56 (55%), Positives = 35/56 (62%)
Frame = -3
Query: 2162 KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
KSVLIMDEVDG SGGDRGG+ D D Y+Q+LK L+NYCLPL
Sbjct: 137 KSVLIMDEVDGMSGGDRGGVSDLIASIKISKIPIICICNDRYNQKLKSLVNYCLPL 192
>ref|XP_002963662.1| hypothetical protein SELMODRAFT_80248 [Selaginella moellendorffii]
gi|300168930|gb|EFJ35533.1| hypothetical protein
SELMODRAFT_80248 [Selaginella moellendorffii]
Length = 465
Score = 62.0 bits (149), Expect = 1e-06
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Frame = -3
Query: 2171 SGKKSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPLT 1992
+GK+SVLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCL L+
Sbjct: 42 AGKQSVLIMDEVDGMSAGDRGGVADLIASIKISKVPIICICNDRYSQKLKSLVNYCLLLS 101
Query: 1991 SNMLTSNHI*RMM------EKMKI*HLLPQQTSKMT 1902
T + + + EK+ I + ++ S+ T
Sbjct: 102 YRKPTKQQMAKRLQDIARSEKLNIDTIALEELSERT 137
>ref|XP_006826419.1| hypothetical protein AMTR_s00004p00160120 [Amborella trichopoda]
gi|548830733|gb|ERM93656.1| hypothetical protein
AMTR_s00004p00160120 [Amborella trichopoda]
Length = 725
Score = 61.6 bits (148), Expect = 1e-06
Identities = 31/56 (55%), Positives = 34/56 (60%)
Frame = -3
Query: 2162 KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
KSVLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLPL
Sbjct: 495 KSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPL 550
>ref|XP_006343613.1| PREDICTED: replication factor C subunit 1-like isoform X2 [Solanum
tuberosum]
Length = 992
Score = 60.8 bits (146), Expect = 2e-06
Identities = 30/74 (40%), Positives = 42/74 (56%)
Frame = -3
Query: 2165 KKSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPLTSN 1986
+K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLP+
Sbjct: 499 QKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPIVFR 558
Query: 1985 MLTSNHI*RMMEKM 1944
T + + ++++
Sbjct: 559 KPTKQQMAKRLKQV 572
>ref|XP_006343612.1| PREDICTED: replication factor C subunit 1-like isoform X1 [Solanum
tuberosum]
Length = 993
Score = 60.8 bits (146), Expect = 2e-06
Identities = 30/74 (40%), Positives = 42/74 (56%)
Frame = -3
Query: 2165 KKSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPLTSN 1986
+K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLP+
Sbjct: 499 QKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPIVFR 558
Query: 1985 MLTSNHI*RMMEKM 1944
T + + ++++
Sbjct: 559 KPTKQQMAKRLKQV 572
>gb|EPS67744.1| hypothetical protein M569_07025, partial [Genlisea aurea]
Length = 888
Score = 60.8 bits (146), Expect = 2e-06
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = -3
Query: 2195 ALCFNILNSGK-KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKI 2019
AL N+ S K+VLIMDEVDG SGGDRGG+ D D YSQ+LK
Sbjct: 452 ALSLNMERSDHPKTVLIMDEVDGMSGGDRGGVADLIASIKISKIPIICICNDRYSQKLKS 511
Query: 2018 LMNYCLPLTSNMLTSNHI*RMMEKM 1944
L+NYCL L T I + + ++
Sbjct: 512 LVNYCLLLNYRKPTKQQIAKRLSQI 536
>ref|XP_002974750.1| hypothetical protein SELMODRAFT_101808 [Selaginella moellendorffii]
gi|300157645|gb|EFJ24270.1| hypothetical protein
SELMODRAFT_101808 [Selaginella moellendorffii]
Length = 468
Score = 60.8 bits (146), Expect = 2e-06
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Frame = -3
Query: 2174 NSGKKSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
N K+SVLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCL L
Sbjct: 44 NKQKQSVLIMDEVDGMSAGDRGGVADLIASIKTSKVPIICICNDRYSQKLKSLVNYCLLL 103
Query: 1994 TSNMLTSNHI*RMM------EKMKI*HLLPQQTSKMT 1902
+ T + + + EK+ I + ++ S+ T
Sbjct: 104 SYRKPTKQQMAKRLQDIARSEKLNIDTIALEELSERT 140
>ref|XP_006400706.1| hypothetical protein EUTSA_v10012587mg [Eutrema salsugineum]
gi|557101796|gb|ESQ42159.1| hypothetical protein
EUTSA_v10012587mg [Eutrema salsugineum]
Length = 962
Score = 60.5 bits (145), Expect = 3e-06
Identities = 30/56 (53%), Positives = 34/56 (60%)
Frame = -3
Query: 2162 KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLPL
Sbjct: 475 KTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPL 530
>ref|XP_006287008.1| hypothetical protein CARUB_v10000156mg [Capsella rubella]
gi|482555714|gb|EOA19906.1| hypothetical protein
CARUB_v10000156mg [Capsella rubella]
Length = 953
Score = 60.5 bits (145), Expect = 3e-06
Identities = 30/56 (53%), Positives = 34/56 (60%)
Frame = -3
Query: 2162 KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLPL
Sbjct: 466 KTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPL 521
>ref|XP_004242616.1| PREDICTED: replication factor C subunit 1-like [Solanum lycopersicum]
Length = 1012
Score = 60.5 bits (145), Expect = 3e-06
Identities = 30/74 (40%), Positives = 41/74 (55%)
Frame = -3
Query: 2165 KKSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPLTSN 1986
+K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLP+
Sbjct: 519 QKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPIVFR 578
Query: 1985 MLTSNHI*RMMEKM 1944
T + + + ++
Sbjct: 579 KPTKQQMAKRLNQV 592
>dbj|BAJ33988.1| unnamed protein product [Thellungiella halophila]
Length = 933
Score = 60.5 bits (145), Expect = 3e-06
Identities = 30/56 (53%), Positives = 34/56 (60%)
Frame = -3
Query: 2162 KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLPL
Sbjct: 446 KTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPL 501
>ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319877|gb|EFH50299.1| AAA-type ATPase family
protein [Arabidopsis lyrata subsp. lyrata]
Length = 960
Score = 60.5 bits (145), Expect = 3e-06
Identities = 30/56 (53%), Positives = 34/56 (60%)
Frame = -3
Query: 2162 KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLPL
Sbjct: 473 KTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPL 528
>ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana]
gi|75168909|sp|Q9C587.1|RFC1_ARATH RecName:
Full=Replication factor C subunit 1; Short=AtRFC1;
AltName: Full=Activator 1 large subunit; AltName:
Full=Activator 1 subunit 1 gi|13374860|emb|CAC34494.1|
replication factor C large subunit-like protein
[Arabidopsis thaliana] gi|48958527|gb|AAT47816.1|
At5g22010 [Arabidopsis thaliana]
gi|332005585|gb|AED92968.1| replication factor C1
[Arabidopsis thaliana]
Length = 956
Score = 60.5 bits (145), Expect = 3e-06
Identities = 30/56 (53%), Positives = 34/56 (60%)
Frame = -3
Query: 2162 KSVLIMDEVDGTSGGDRGGILDXXXXXXXXXXXXXXXXIDHYSQELKILMNYCLPL 1995
K+VLIMDEVDG S GDRGG+ D D YSQ+LK L+NYCLPL
Sbjct: 469 KTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPL 524