BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00005795
         (1413 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   446   e-122
gb|ADE77570.1| unknown [Picea sitchensis]                             441   e-121
ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   439   e-120
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   439   e-120
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   438   e-120
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   437   e-120
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   437   e-120
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob...   437   e-120
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   436   e-119
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   436   e-119
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   435   e-119
gb|AFK41039.1| unknown [Medicago truncatula]                          433   e-119
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus...   432   e-118
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   432   e-118
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   432   e-118
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   430   e-118
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...   430   e-118
ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi...   429   e-117
ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Sela...   427   e-117
ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selag...   426   e-117

>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
            gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
            RNA polymerases II, IV and V subunit 3-like [Citrus
            sinensis] gi|557524889|gb|ESR36195.1| hypothetical
            protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  446 bits (1147), Expect = e-122
 Identities = 229/321 (71%), Positives = 262/321 (81%), Gaps = 8/321 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M G S  R P +KIRE+KD++ KFELRDTDASMANALRRV+++EVPTIAIDLVEIE NSS
Sbjct: 1    MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L  +C ++Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 544  TTHDLKSEDSSGVVP--------YECPTDNRGILIVKLSKGQELKLRAIARKGIGKDHAK 699
            T+ DL S D S VVP        Y+     RGI+IVKL +GQEL+LRAIARKGIGKDHAK
Sbjct: 121  TSKDLYSSDHS-VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179

Query: 700  WSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAY 879
            WSPAATVTFMYEP+IHINE+LM+SLSLE+KQ  V S PT+VF I +     VYV DAEAY
Sbjct: 180  WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI-DPNTGQVYVVDAEAY 238

Query: 880  TYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRL 1059
            TYDDE+IKKAEAMGKPGL+ I  KEDSFIFTVESTGA+K S++VLNAIE+LK+KLD VRL
Sbjct: 239  TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298

Query: 1060 SSDTQEDDEQFGDLGRHMVGG 1122
            S DT E D+QFG+LG HM GG
Sbjct: 299  SEDTVEADDQFGELGAHMRGG 319


>gb|ADE77570.1| unknown [Picea sitchensis]
          Length = 330

 Score =  441 bits (1134), Expect = e-121
 Identities = 223/330 (67%), Positives = 270/330 (81%), Gaps = 10/330 (3%)
 Frame = +1

Query: 169  MEAEQMSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEI 348
            M+ +     S  R P +KIREMKD++MKFEL++TD S+ANALRRV++ EVPTIAIDLVEI
Sbjct: 1    MDGQGQMSSSYQRFPTVKIREMKDDYMKFELKNTDPSIANALRRVMIGEVPTIAIDLVEI 60

Query: 349  EANSSVLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENE 528
            E+NSSVLNDEFLAHRLGLIPLIS RA DMRFSRDCD+CDGD QC YCSVEF+L+V+C+ +
Sbjct: 61   ESNSSVLNDEFLAHRLGLIPLISERAMDMRFSRDCDTCDGDAQCHYCSVEFKLNVKCDGD 120

Query: 529  QCLDVTTHDLKSED--SSGVVPYECPTD--------NRGILIVKLSKGQELKLRAIARKG 678
            Q LDVT+ DL S D   + VV  +   D         RGI+IVKL +GQEL+LRAIARKG
Sbjct: 121  QTLDVTSLDLVSSDMRENPVVAVDRAADMNVFDASEQRGIIIVKLRRGQELRLRAIARKG 180

Query: 679  IGKDHAKWSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVY 858
            IGKDHAKWSPAATVTFMYEP IHINENLM++L+L++K++ + SCPT+VF I  +    V+
Sbjct: 181  IGKDHAKWSPAATVTFMYEPDIHINENLMETLTLDEKREWIESCPTKVFDIHPD-TQQVF 239

Query: 859  VCDAEAYTYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKK 1038
            V DAEAY+YDDE+IKKAEAMGKPGL+SIN K+DSFIFT+ESTGALK S+M+LNAI+ILK+
Sbjct: 240  VVDAEAYSYDDEVIKKAEAMGKPGLVSINAKDDSFIFTIESTGALKASQMLLNAIDILKQ 299

Query: 1039 KLDVVRLSSDTQEDDEQFGDLGRHMVGGDG 1128
            KL+ VRLS +T+EDD QF DL +HM GG G
Sbjct: 300  KLETVRLSPETEEDDAQFIDLEQHMRGGGG 329


>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
            gi|548856809|gb|ERN14637.1| hypothetical protein
            AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  439 bits (1129), Expect = e-120
 Identities = 223/325 (68%), Positives = 268/325 (82%), Gaps = 12/325 (3%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M GVS  R P +KIREMKD+++KFELR+TD SMANALRR++++EVPTIAIDLVEIEANSS
Sbjct: 1    MEGVSYQRFPKVKIREMKDDYLKFELRETDPSMANALRRIMLAEVPTIAIDLVEIEANSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEFLAHRLGLIPL S +A  MRFSRDCD+CDGD QCEYCSVEF+L V+C+++Q LDV
Sbjct: 61   VLNDEFLAHRLGLIPLTSEKAMSMRFSRDCDACDGDGQCEYCSVEFQLSVKCDSDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC-----------PTDNRGILIVKLSKGQELKLRAIARKGIGKD 690
            T+ DL S D   V+P +             ++ RGI+IVKL +GQEL+LRAIARKGIGKD
Sbjct: 121  TSADLVSSDIH-VIPVDVAGRGMDSNGFDASEQRGIIIVKLRRGQELRLRAIARKGIGKD 179

Query: 691  HAKWSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNH-VYVCD 867
            HAKWSP ATVTFMYEP+IHIN++LM++LSL++K++ V S PTRVF I  +P  H V V D
Sbjct: 180  HAKWSPGATVTFMYEPEIHINDDLMETLSLDEKREWVESSPTRVFDI--DPNTHQVVVVD 237

Query: 868  AEAYTYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLD 1047
             EAYTYDDE+IKKAEAMGKPGL+ I  +EDSFIFTVESTGA+K S++V+NAIE+LK+KLD
Sbjct: 238  PEAYTYDDEVIKKAEAMGKPGLVEIYAREDSFIFTVESTGAIKASQLVINAIEVLKQKLD 297

Query: 1048 VVRLSSDTQEDDEQFGDLGRHMVGG 1122
             VRLS DT+E DEQFG+LG HM GG
Sbjct: 298  AVRLSLDTEEGDEQFGELGAHMRGG 322


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Cicer
            arietinum]
          Length = 319

 Score =  439 bits (1128), Expect = e-120
 Identities = 227/321 (70%), Positives = 263/321 (81%), Gaps = 8/321 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M G S  RMP +KIRE+KD++MKFELRDTDAS+ANALRRV++SEVPTIAIDLVEIE NSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCEYCSVEF L V+C  +Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC--------PTDNRGILIVKLSKGQELKLRAIARKGIGKDHAK 699
            T+ DL S D + VVP +          +D RGI+IVKL +GQEL+LRAIARKGIGKDHAK
Sbjct: 121  TSKDLYSSDHT-VVPVDFSADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179

Query: 700  WSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAY 879
            WSPAATVTFMYEP IHINE+LM+SL+LE+K++ V S PTRVF I +     V V D EAY
Sbjct: 180  WSPAATVTFMYEPDIHINEDLMESLTLEEKREWVDSSPTRVFDI-DPVTQQVMVVDPEAY 238

Query: 880  TYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRL 1059
            +YDDE+IKKAEAMGKPGL+ I  K+DSFIFTVESTGA+K S+++LNAIEILK+KLD VRL
Sbjct: 239  SYDDEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRL 298

Query: 1060 SSDTQEDDEQFGDLGRHMVGG 1122
            S DT E D+QFG+LG HM GG
Sbjct: 299  SEDTVEADDQFGELGAHMRGG 319


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
            gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
            [Medicago truncatula] gi|355508950|gb|AES90092.1|
            DNA-directed RNA polymerase II subunit RPB3-A [Medicago
            truncatula]
          Length = 318

 Score =  438 bits (1126), Expect = e-120
 Identities = 224/320 (70%), Positives = 263/320 (82%), Gaps = 7/320 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M G S  RMP +KIRE+KD++MKFELRDTDAS+ANALRRV++SEVPT+AIDLVEIE NSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCEYCSVEF L V+C  +Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYECP-------TDNRGILIVKLSKGQELKLRAIARKGIGKDHAKW 702
            ++ DL S D + V P + P       +D RGI+IVKL +GQEL+LRAIARKGIGKDHAKW
Sbjct: 121  SSKDLISSDHT-VTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 703  SPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYT 882
            SPAATVTFMYEP IHINE+LM+SL+LE+K++ V S PTRVF I +     V V D EAY+
Sbjct: 180  SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDI-DPVTQQVMVVDPEAYS 238

Query: 883  YDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLS 1062
            YDDE+IKKAEAMGKPGL+ I  K+DSFIFTVESTGA+K S+++LN+IEILK+KLD VRLS
Sbjct: 239  YDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLS 298

Query: 1063 SDTQEDDEQFGDLGRHMVGG 1122
             DT E D+QFG+LG HM GG
Sbjct: 299  EDTVEADDQFGELGAHMRGG 318


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Solanum lycopersicum]
          Length = 319

 Score =  437 bits (1124), Expect = e-120
 Identities = 222/321 (69%), Positives = 266/321 (82%), Gaps = 8/321 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M GVS  R P IK+RE+KD+FMKFELRDTDAS+ANALRR++++EVPTIAIDLVEIE NSS
Sbjct: 1    MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF++HRLGL+PL S RA  MRFSRDCD+CDGD QCEYCSVEF L V+C ++Q LDV
Sbjct: 61   VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYECP--------TDNRGILIVKLSKGQELKLRAIARKGIGKDHAK 699
            T+ DL S D + VVP +          T N+GI+IVKL +GQEL+LRAIARKGIGKDHAK
Sbjct: 121  TSKDLLSSDHT-VVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 179

Query: 700  WSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAY 879
            WSPAATVTFMYEP+I+INE++M+SL+LE+K +LV S PT+VF I  E    V V D EAY
Sbjct: 180  WSPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPE-NKQVIVVDPEAY 238

Query: 880  TYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRL 1059
            TYDDE++KKAEAMGKPG++ I+ KEDSFIFTVE+TGA+K S++VLNAIE+LK+KLD VRL
Sbjct: 239  TYDDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRL 298

Query: 1060 SSDTQEDDEQFGDLGRHMVGG 1122
            S DT E D+QFG+LG HM GG
Sbjct: 299  SDDTVEADDQFGELGAHMRGG 319


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Glycine max]
          Length = 320

 Score =  437 bits (1124), Expect = e-120
 Identities = 223/318 (70%), Positives = 262/318 (82%), Gaps = 7/318 (2%)
 Frame = +1

Query: 190  GVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSSVL 369
            GVS  RMP +KIRE+KD++ KFELRDTDAS+ANALRRV+++EVPT+AIDLVEIE NSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 370  NDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDVTT 549
            NDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L V+C  +Q LDVT+
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 550  HDLKSEDS-------SGVVPYECPTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKWSP 708
             DL S D        S     + P +NRGI+IVKL +GQELKLRAIARKGIGKDHAKWSP
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 183

Query: 709  AATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYTYD 888
            AATVTFMYEP+IHINE+LM++L+LE+K++ V S PTRVF I +     V V DAEAYTYD
Sbjct: 184  AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEI-DPVTQQVMVVDAEAYTYD 242

Query: 889  DEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLSSD 1068
            DE++KKAEAMGKPGL+ I  ++DSFIFTVESTGA+K S++VLNAIEILK+KLD VRLS D
Sbjct: 243  DEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSED 302

Query: 1069 TQEDDEQFGDLGRHMVGG 1122
            T E D+QFG+LG HM GG
Sbjct: 303  TVEADDQFGELGAHMRGG 320


>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
          Length = 318

 Score =  437 bits (1123), Expect = e-120
 Identities = 223/320 (69%), Positives = 261/320 (81%), Gaps = 7/320 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M GVS  R P +KIRE+KD++ KFELRDTDASMANALRRV+++EVPTIAIDLVEIE NSS
Sbjct: 1    MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L  +C  +Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC-------PTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKW 702
            T+ DL S D + VVP +         ++ RGI+IVKL +GQEL+LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLYSSDHT-VVPVDFTDSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 703  SPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYT 882
            SPAATVTFMYEP+IHINE++M++L+LE+KQ  V S PTRVF I +     V V D EAYT
Sbjct: 180  SPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDI-DPNTQQVVVVDPEAYT 238

Query: 883  YDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLS 1062
            YDDE++KKAEAMGKPGL+ I  KEDSFIFTVESTGA+K S++VLNAIE+LK+KLD VRLS
Sbjct: 239  YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 298

Query: 1063 SDTQEDDEQFGDLGRHMVGG 1122
             DT E D+QFG+LG HM GG
Sbjct: 299  EDTVEADDQFGELGAHMRGG 318


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Solanum tuberosum]
          Length = 319

 Score =  436 bits (1121), Expect = e-119
 Identities = 222/321 (69%), Positives = 266/321 (82%), Gaps = 8/321 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M GVS  R P IKIRE+KD+FMKFELR+TDAS+ANALRR++++EVPTIAIDLVEIE NSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF++HRLGL+PL S RA  MRFSRDCD+CDGD QCEYCSVEF L V+C ++Q LDV
Sbjct: 61   VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYECP--------TDNRGILIVKLSKGQELKLRAIARKGIGKDHAK 699
            T+ DL S D + VVP +          T N+GI+IVKL +GQEL+LRAIARKGIGKDHAK
Sbjct: 121  TSKDLLSSDHT-VVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAK 179

Query: 700  WSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAY 879
            WSPAATVTFMYEP+I+INE++M+SL+LE+K +LV S PT+VF I  E    V V D EAY
Sbjct: 180  WSPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPE-NKQVIVVDPEAY 238

Query: 880  TYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRL 1059
            TYDDE++KKAEAMGKPG++ I+ KEDSFIFTVE+TGA+K S++VLNAIE+LK+KLD VRL
Sbjct: 239  TYDDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRL 298

Query: 1060 SSDTQEDDEQFGDLGRHMVGG 1122
            S DT E D+QFG+LG HM GG
Sbjct: 299  SDDTVEADDQFGELGAHMRGG 319


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
            [Glycine max]
          Length = 319

 Score =  436 bits (1121), Expect = e-119
 Identities = 223/317 (70%), Positives = 264/317 (83%), Gaps = 6/317 (1%)
 Frame = +1

Query: 190  GVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSSVL 369
            GVS  RMP +KIRE+KD++ KFELRDTDAS+ANALRRV+++EVPT+AIDLVEIE NSSVL
Sbjct: 4    GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63

Query: 370  NDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDVTT 549
            NDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L V+C  +Q LDVT+
Sbjct: 64   NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123

Query: 550  HDLKSEDSS-GVVPYECPT-----DNRGILIVKLSKGQELKLRAIARKGIGKDHAKWSPA 711
             DL S D +   V +  P+     +NRGI+IVKL +GQELKLRAIARKGIGKDHAKWSPA
Sbjct: 124  KDLYSSDPTVSPVDFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPA 183

Query: 712  ATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYTYDD 891
            ATVTFMYEP+IHINE+LM++L+LE+K++ V S PTRVF I +     V V DAEAYTYDD
Sbjct: 184  ATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEI-DPVTQQVMVVDAEAYTYDD 242

Query: 892  EIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLSSDT 1071
            E++KKAEAMGKPGL+ I  ++DSFIFTVESTGA+K S++VLNAIEILK+KLD VRLS DT
Sbjct: 243  EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 302

Query: 1072 QEDDEQFGDLGRHMVGG 1122
             E D+QFG+LG HM GG
Sbjct: 303  VEADDQFGELGAHMRGG 319


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  435 bits (1118), Expect = e-119
 Identities = 224/320 (70%), Positives = 260/320 (81%), Gaps = 7/320 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M G S  R P IKIRE+KD++ KFELRDTDASMANALRRV+++EVPT+AIDLVEIE NSS
Sbjct: 1    MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QC+YCSVEF L  +C  +Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC-------PTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKW 702
            T+ DL S D + VVP +         ++ RGI+IVKL +GQEL+LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLYSSDHT-VVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 703  SPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYT 882
            SPAATVTFMYEP IHINE+LM+SLSLE+KQ  V S PT+VF I +     V V D EAYT
Sbjct: 180  SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDI-DPNTQQVVVVDPEAYT 238

Query: 883  YDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLS 1062
            YD+E+IKKAE+MGKPGL++I  KEDSFIFTVESTGA+K S++VLNAIEILK+KLD VRLS
Sbjct: 239  YDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLS 298

Query: 1063 SDTQEDDEQFGDLGRHMVGG 1122
             DT E D+QFG+LG HM GG
Sbjct: 299  EDTVEADDQFGELGAHMRGG 318


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  433 bits (1114), Expect = e-119
 Identities = 223/320 (69%), Positives = 262/320 (81%), Gaps = 7/320 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M G S  RMP +KIRE+KD++MKFELRDTDAS+ANALRRV++SEVPT+AIDLVEIE NSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCEYCSVEF L V+   +Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYECP-------TDNRGILIVKLSKGQELKLRAIARKGIGKDHAKW 702
            ++ DL S D + V P + P       +D RGI+IVKL +GQEL+LRAIARKGIGKDHAKW
Sbjct: 121  SSKDLISSDHT-VTPVDVPGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 703  SPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYT 882
            SPAATVTFMYEP IHINE+LM+SL+LE+K++ V S PTRVF I +     V V D EAY+
Sbjct: 180  SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDI-DPVTQQVMVVDPEAYS 238

Query: 883  YDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLS 1062
            YDDE+IKKAEAMGKPGL+ I  K+DSFIFTVESTGA+K S+++LN+IEILK+KLD VRLS
Sbjct: 239  YDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLS 298

Query: 1063 SDTQEDDEQFGDLGRHMVGG 1122
             DT E D+QFG+LG HM GG
Sbjct: 299  EDTVEADDQFGELGAHMRGG 318


>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  432 bits (1112), Expect = e-118
 Identities = 220/320 (68%), Positives = 266/320 (83%), Gaps = 7/320 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M G S  RMP +KIRE+KD++ KFELRDTDAS+ANALRRV+++EVPTIAIDLVEIE NSS
Sbjct: 1    MEGASYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L V+C  +Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC-------PTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKW 702
            ++ DL S D S VVP +         +++RG++IVKL +GQEL+LRAIARKGIGKDHAKW
Sbjct: 121  SSKDLYSSDPS-VVPVDFSDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 703  SPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYT 882
            SPAATVTFMYEP+IH+NE+LM++L+LE+K++ V S PTRVF I +     V V D+EAY+
Sbjct: 180  SPAATVTFMYEPEIHLNEDLMETLTLEEKREWVDSSPTRVFEI-DPVTQQVMVVDSEAYS 238

Query: 883  YDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLS 1062
            YDDE+IKKAEAMGKPGL+ I  ++DSFIFTVESTGA+K+S++VLNAIEILK+KLD VRLS
Sbjct: 239  YDDEVIKKAEAMGKPGLVEIIARQDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVRLS 298

Query: 1063 SDTQEDDEQFGDLGRHMVGG 1122
             DT E D+QFG+LG HM GG
Sbjct: 299  EDTVEADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  432 bits (1112), Expect = e-118
 Identities = 221/320 (69%), Positives = 260/320 (81%), Gaps = 7/320 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M GVS  R P IKIRE+KD++ KFELR+TDASMANALRRV+++EVPT+AIDLVEIE NSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L  +C  ++ LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC-------PTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKW 702
            T+ DL S D + VVP +          D +GI+IVKL +GQEL+LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLISSDHT-VVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 703  SPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYT 882
            SPAATVTFMYEP+IHINE+LM+SL+LE+K   V S PT+VF I +     V V DAEAYT
Sbjct: 180  SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDI-DASSQQVVVADAEAYT 238

Query: 883  YDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLS 1062
            YDDE++KKAEAMGKPGL+ I  KEDSFIFTVESTGA+K S++VLNAI++LK+KLD VRLS
Sbjct: 239  YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLS 298

Query: 1063 SDTQEDDEQFGDLGRHMVGG 1122
             DT E D+QFG+LG HM GG
Sbjct: 299  EDTVEADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  432 bits (1110), Expect = e-118
 Identities = 221/320 (69%), Positives = 260/320 (81%), Gaps = 7/320 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M GVS  R P IKIRE+KD++ KFELR+TDASMANALRRV+++EVPT+AIDLVEIE NSS
Sbjct: 1    MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L  +C  ++ LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC-------PTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKW 702
            T+ DL S D + VVP +          D +GI+IVKL +GQEL+LRAIARKGIGKDHAKW
Sbjct: 121  TSKDLISSDHT-VVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179

Query: 703  SPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYT 882
            SPAATVTFMYEP+IHINE+LM+SL+LE+K   V S PT+VF I +     V V DAEAYT
Sbjct: 180  SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDI-DASSQQVVVADAEAYT 238

Query: 883  YDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLS 1062
            YDDE++KKAEAMGKPGL+ I  KEDSFIFTVESTGA+K S++VLNAI++LK+KLD VRLS
Sbjct: 239  YDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLS 298

Query: 1063 SDTQEDDEQFGDLGRHMVGG 1122
             DT E D+QFG+LG HM GG
Sbjct: 299  EDTVEADDQFGELGAHMRGG 318


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Cucumis sativus]
          Length = 320

 Score =  430 bits (1106), Expect = e-118
 Identities = 219/322 (68%), Positives = 260/322 (80%), Gaps = 9/322 (2%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M G S  R P +KIRE++D++ KFELRDTDASMANALRRV+++EVPTIAIDLVEIE NSS
Sbjct: 1    MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCE+CSVEF L  +C ++Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC---------PTDNRGILIVKLSKGQELKLRAIARKGIGKDHA 696
            T+ DL S D + VVP +            D +GI+IVKL +GQEL+LRAIARKGIGKDHA
Sbjct: 121  TSKDLYSSDHT-VVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHA 179

Query: 697  KWSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEA 876
            KWSPAATVTFMYEP IHINE+LM++L+LE+K+  V SCPTRVF + +   + V V D EA
Sbjct: 180  KWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFEL-DTVTHQVMVVDPEA 238

Query: 877  YTYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVR 1056
            YTYDDE+IKKAEAMGK GL+ I  +EDSFIFTVESTGA+K S+++LNAI+ILK+KLD VR
Sbjct: 239  YTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR 298

Query: 1057 LSSDTQEDDEQFGDLGRHMVGG 1122
            LS DT E D+QFG+LG HM GG
Sbjct: 299  LSDDTVEADDQFGELGAHMRGG 320


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
            [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
            DNA-directed RNA polymerase II 36 kDa polypeptide B
            family protein [Populus trichocarpa]
          Length = 323

 Score =  430 bits (1105), Expect = e-118
 Identities = 223/324 (68%), Positives = 260/324 (80%), Gaps = 11/324 (3%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M  VS  R P IKIREMKD+++KFELR+TDASMANALRRV+++EVPTIAIDLVEIE NSS
Sbjct: 1    MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEF+AHRLGLIPL S RA  MRFSRDCD+CDGD QCEYCSVEF L  +C  +Q LDV
Sbjct: 61   VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 544  TTHDLKSEDSSGV-VPYECPTD----------NRGILIVKLSKGQELKLRAIARKGIGKD 690
            T+ DL S D + + V +  P+D           RGI+IVKL +GQEL+LRAIARKGIGKD
Sbjct: 121  TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKD 180

Query: 691  HAKWSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDA 870
            HAKWSPAATVTFMYEP+IHINE+LM++L+LE+K   + S PT+VF I ++    V V D 
Sbjct: 181  HAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDI-DKVTQQVVVVDP 239

Query: 871  EAYTYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDV 1050
            EAYTYDDE+IKKAEAMGK GL+ I  KEDSFIFTVESTGA+K S++VLNAIEILK+KLD 
Sbjct: 240  EAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDA 299

Query: 1051 VRLSSDTQEDDEQFGDLGRHMVGG 1122
            VRLS DT E D+QFG+LG HM GG
Sbjct: 300  VRLSDDTVEADDQFGELGVHMRGG 323


>ref|XP_001765827.1| predicted protein [Physcomitrella patens] gi|162683004|gb|EDQ69418.1|
            predicted protein [Physcomitrella patens]
          Length = 324

 Score =  429 bits (1102), Expect = e-117
 Identities = 216/324 (66%), Positives = 260/324 (80%), Gaps = 11/324 (3%)
 Frame = +1

Query: 184  MSGVSSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSS 363
            M  VS  R P ++IR++KD+ +KFELRDTDAS+ANALRR++++EVPT+AIDLVEIE+NSS
Sbjct: 1    MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60

Query: 364  VLNDEFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDV 543
            VLNDEFLAHRLGLIP++S RA +MR SRDCD+CDGD +CEYCS+EF L V+C  +Q LDV
Sbjct: 61   VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120

Query: 544  TTHDLKSEDSSGVVPYEC-----------PTDNRGILIVKLSKGQELKLRAIARKGIGKD 690
            T+ DL S D S ++P +              D RGILIVKL KGQELKLRAIARKGIGKD
Sbjct: 121  TSLDLVSSDPS-IIPVDAAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIGKD 179

Query: 691  HAKWSPAATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDA 870
            HAKWSPAATVTF YEP+IHINE LM++L+LE+KQ+ + S PT+VF + +     V V D 
Sbjct: 180  HAKWSPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFEL-DPVSQQVVVVDP 238

Query: 871  EAYTYDDEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDV 1050
            EAYTYD+E++KKAEAMGKPGL+ I  KEDSFIFTVESTGA+K S+M LNAIEILK KLD 
Sbjct: 239  EAYTYDEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDA 298

Query: 1051 VRLSSDTQEDDEQFGDLGRHMVGG 1122
            VRLS DT+E D+QFG+LG HM GG
Sbjct: 299  VRLSFDTEEADDQFGELGAHMRGG 322


>ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
            gi|300149109|gb|EFJ15766.1| hypothetical protein
            SELMODRAFT_180179 [Selaginella moellendorffii]
          Length = 320

 Score =  427 bits (1099), Expect = e-117
 Identities = 219/318 (68%), Positives = 257/318 (80%), Gaps = 9/318 (2%)
 Frame = +1

Query: 196  SSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSSVLND 375
            S  R P ++IR++KD+F+KFELRDTDAS+ANALRRVI++EVPT+AIDLVEIEANSSVLND
Sbjct: 4    SYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLND 63

Query: 376  EFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDVTTHD 555
            EF+AHRLGLIPL S +A +MR+SRDCD CDGD +C+YCS+EF L V+C +E+ LDVT+HD
Sbjct: 64   EFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVTSHD 123

Query: 556  LKSEDSSGVVP---------YECPTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKWSP 708
            L+S DS  VVP          E     +GILIVKL KGQELKLRAIARKGI KDHAKWSP
Sbjct: 124  LQSSDSQ-VVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSP 182

Query: 709  AATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYTYD 888
            AATVTF YEP IHINENLM++LSLE+K++ V S PT+VF I  E    V V D EAYTYD
Sbjct: 183  AATVTFQYEPDIHINENLMETLSLEEKREWVDSSPTKVFEINPE-TQQVEVVDPEAYTYD 241

Query: 889  DEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLSSD 1068
            DE+IKKAEAMGKPGL+ I  KEDSFIFTVESTGA+K ++M LNAIEIL+ KLD V+L+  
Sbjct: 242  DEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNFG 301

Query: 1069 TQEDDEQFGDLGRHMVGG 1122
            + E DEQFGDLG HM GG
Sbjct: 302  SDEADEQFGDLGAHMRGG 319


>ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
            gi|300171553|gb|EFJ38153.1| hypothetical protein
            SELMODRAFT_75337 [Selaginella moellendorffii]
          Length = 320

 Score =  426 bits (1096), Expect = e-117
 Identities = 218/318 (68%), Positives = 257/318 (80%), Gaps = 9/318 (2%)
 Frame = +1

Query: 196  SSPRMPVIKIREMKDEFMKFELRDTDASMANALRRVIMSEVPTIAIDLVEIEANSSVLND 375
            S  R P ++IR++KD+F+KFELRDTDAS+ANALRRVI++EVPT+AIDLVEIEANSSVLND
Sbjct: 4    SYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLND 63

Query: 376  EFLAHRLGLIPLISHRAFDMRFSRDCDSCDGDTQCEYCSVEFRLDVRCENEQCLDVTTHD 555
            EF+AHRLGLIPL S +A +MR+SRDCD CDGD +C+YCS+EF L V+C +E+ LDVT+HD
Sbjct: 64   EFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVTSHD 123

Query: 556  LKSEDSSGVVP---------YECPTDNRGILIVKLSKGQELKLRAIARKGIGKDHAKWSP 708
            L+S DS  VVP          E     +GILIVKL KGQELKLRAIARKGI KDHAKWSP
Sbjct: 124  LQSSDSQ-VVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWSP 182

Query: 709  AATVTFMYEPQIHINENLMQSLSLEDKQDLVASCPTRVFSITEEPPNHVYVCDAEAYTYD 888
            AATVTF YEP IHINENLM++LS+E+K++ V S PT+VF I  E    V V D EAYTYD
Sbjct: 183  AATVTFQYEPDIHINENLMETLSVEEKREWVDSSPTKVFEINPE-TQQVEVIDPEAYTYD 241

Query: 889  DEIIKKAEAMGKPGLLSINQKEDSFIFTVESTGALKTSEMVLNAIEILKKKLDVVRLSSD 1068
            DE+IKKAEAMGKPGL+ I  KEDSFIFTVESTGA+K ++M LNAIEIL+ KLD V+L+  
Sbjct: 242  DEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNFG 301

Query: 1069 TQEDDEQFGDLGRHMVGG 1122
            + E DEQFGDLG HM GG
Sbjct: 302  SDEADEQFGDLGAHMRGG 319