BLASTX nr result
ID: Ephedra28_contig00005543
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00005543
(424 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps... 103 2e-20
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops... 103 2e-20
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha... 103 2e-20
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ... 103 3e-20
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 102 4e-20
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 102 4e-20
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 102 4e-20
gb|ESW09024.1| hypothetical protein PHAVU_009G093700g [Phaseolus... 101 9e-20
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 101 9e-20
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 101 1e-19
gb|ACU17923.1| unknown [Glycine max] 101 1e-19
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 100 2e-19
gb|AFG54512.1| hypothetical protein 0_10048_01, partial [Pinus t... 100 2e-19
gb|AFG54505.1| hypothetical protein 0_10048_01, partial [Pinus t... 100 2e-19
gb|AEW07730.1| hypothetical protein 0_10048_01, partial [Pinus r... 100 2e-19
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 100 3e-19
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L... 100 3e-19
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 98 1e-18
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 98 1e-18
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 98 1e-18
>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
gi|482559225|gb|EOA23416.1| hypothetical protein
CARUB_v10016597mg [Capsella rubella]
Length = 1197
Score = 103 bits (258), Expect = 2e-20
Identities = 53/119 (44%), Positives = 76/119 (63%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQS------ 166
V++E E+V+G++ S+ + +KKQ KERL H+Y +L+KE+R FE D
Sbjct: 1058 VQKEEEIVTGHIWSMPKYTSKKQ-GDLKERLKHSYNSLKKEFRKVFEETIPDHENLSDEE 1116
Query: 167 -----EAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
E KASAWY+VTYHP WV K+L+ + + +H ++LSF WI ADYLA+IKI+ R
Sbjct: 1117 KNILYEKKASAWYHVTYHPKWVTKSLELQDPDESSTHAVMLSFAWIAADYLARIKIRSR 1175
>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 103 bits (257), Expect = 2e-20
Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQS------ 166
V++E E+V+G++ S+ + +KKQ + KERL H+Y +L+KE+R FE D
Sbjct: 1058 VQKEEEIVTGHIWSMPKYTSKKQ-GELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEE 1116
Query: 167 -----EAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
E KASAWY+VTYHP WV+K+L E + SH +LSF WI ADYLA+IKI+ R
Sbjct: 1117 KNILYEKKASAWYHVTYHPEWVKKSL-ELQDPDESSHAAMLSFAWIAADYLARIKIRSR 1174
>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative
RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
6 [Arabidopsis thaliana]
Length = 1196
Score = 103 bits (257), Expect = 2e-20
Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQS------ 166
V++E E+V+G++ S+ + +KKQ + KERL H+Y +L+KE+R FE D
Sbjct: 1058 VQKEEEIVTGHIWSMPKYTSKKQ-GELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEE 1116
Query: 167 -----EAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
E KASAWY+VTYHP WV+K+L E + SH +LSF WI ADYLA+IKI+ R
Sbjct: 1117 KNILYEKKASAWYHVTYHPEWVKKSL-ELQDPDESSHAAMLSFAWIAADYLARIKIRSR 1174
>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 103 bits (256), Expect = 3e-20
Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 11/117 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQSEA---- 172
V++E E+V+G++ S+ + +KKQ + KERL H+Y +L+KE+R FE D E
Sbjct: 1058 VQKEEEIVTGHIWSMPKYTSKKQCD-LKERLKHSYNSLKKEFRKVFEETILDHEELSEEE 1116
Query: 173 -------KASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQ 322
KASAWY+VTYHP WV+K+L+ + SH ++LSF WI ADYLAKIKI+
Sbjct: 1117 KNILYEKKASAWYHVTYHPKWVKKSLELQDPDEPSSHAVMLSFAWIAADYLAKIKIR 1173
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 102 bits (255), Expect = 4e-20
Identities = 59/119 (49%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFA---------- 154
V RE EVV+GY+ S+ + KKQ + KERL HAY LRKE+RN FE
Sbjct: 1059 VNREEEVVTGYIWSMPKYNAKKQ-GELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDE 1117
Query: 155 -RDQSEAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
D E KASAWY VTYHP WV ++L E S+ ++LSF WI ADYLA+IKI+ R
Sbjct: 1118 KNDMYERKASAWYQVTYHPHWVARSL-ELQLADAVSNTVMLSFAWIAADYLARIKIRHR 1175
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 102 bits (255), Expect = 4e-20
Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQS------ 166
VKRE EVV+G+V S+ + ++KQ T ERL HAY +L+KE+R FE D
Sbjct: 896 VKREEEVVTGHVWSMPKYKSRKQGELT-ERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDE 954
Query: 167 -----EAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
E KASAWY VTYHPTWV+K+L+ N ++LSF WI ADYLA+IKI+++
Sbjct: 955 KNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRK 1013
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 102 bits (255), Expect = 4e-20
Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQS------ 166
VKRE EVV+G+V S+ + ++KQ T ERL HAY +L+KE+R FE D
Sbjct: 1058 VKREEEVVTGHVWSMPKYKSRKQGELT-ERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDE 1116
Query: 167 -----EAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
E KASAWY VTYHPTWV+K+L+ N ++LSF WI ADYLA+IKI+++
Sbjct: 1117 KNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRK 1175
>gb|ESW09024.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
Length = 1204
Score = 101 bits (252), Expect = 9e-20
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 17/125 (13%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQSEA---- 172
VKRE EVV+G + S+ + ++KQ + KERL H+Y AL+KE+R+ FE + D E
Sbjct: 1057 VKREEEVVTGQIWSMPKYNSRKQ-GELKERLKHSYSALKKEFRHTFEKLSSDVGELSEEE 1115
Query: 173 -------KASAWYYVTYHPTWVQKALD------EANEIANCSHPLLLSFPWICADYLAKI 313
KASAWY VTYHP WV+K+LD E+ E ++LSFPWI DYLA+
Sbjct: 1116 KNLLYEQKASAWYQVTYHPYWVKKSLDLQDKSPESQEADCLGSTVMLSFPWIAVDYLART 1175
Query: 314 KIQKR 328
KI++R
Sbjct: 1176 KIRER 1180
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 101 bits (252), Expect = 9e-20
Identities = 58/119 (48%), Positives = 74/119 (62%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGF----------- 151
V RE EVV+G++ S+ + + KKQ + KERL HAY LRKE+RN FE
Sbjct: 1059 VNREEEVVTGHIWSMPKYSAKKQ-GELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDE 1117
Query: 152 ARDQSEAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
D E KASAWY VTYHP WV ++L+ A S+ ++LSF WI ADYLA+IKI+ R
Sbjct: 1118 KNDMYERKASAWYQVTYHPHWVARSLELQLPDA-VSNTVMLSFAWIAADYLARIKIRHR 1175
>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
max] gi|571459266|ref|XP_006581359.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
max]
Length = 1204
Score = 101 bits (251), Expect = 1e-19
Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 17/125 (13%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQSEA---- 172
VKRE EVV+G + S+ + ++KQ + KERL H+Y AL+KE+R+ FE D E
Sbjct: 1057 VKREEEVVTGQIWSMPKYNSRKQ-GELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEE 1115
Query: 173 -------KASAWYYVTYHPTWVQKALD------EANEIANCSHPLLLSFPWICADYLAKI 313
KASAWY VTYHP WV+K+LD E E + ++LSFPWI DYLA+
Sbjct: 1116 KNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLART 1175
Query: 314 KIQKR 328
KI++R
Sbjct: 1176 KIRQR 1180
>gb|ACU17923.1| unknown [Glycine max]
Length = 290
Score = 101 bits (251), Expect = 1e-19
Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 17/125 (13%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQSEA---- 172
VKRE EVV+G + S+ + ++KQ + KERL H+Y AL+KE+R+ FE D E
Sbjct: 143 VKREEEVVTGQIWSMPKYNSRKQ-GELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEE 201
Query: 173 -------KASAWYYVTYHPTWVQKALD------EANEIANCSHPLLLSFPWICADYLAKI 313
KASAWY VTYHP WV+K+LD E E + ++LSFPWI DYLA+
Sbjct: 202 KNLFYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLART 261
Query: 314 KIQKR 328
KI++R
Sbjct: 262 KIRQR 266
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 100 bits (250), Expect = 2e-19
Identities = 58/119 (48%), Positives = 73/119 (61%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFA---------- 154
V RE EVV+G++ S+ + + KKQ + KERL HAY LRKE+RN FE
Sbjct: 1059 VNREEEVVTGHIWSMPKYSAKKQ-GELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDE 1117
Query: 155 -RDQSEAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
D E KASAWY VTYHP WV ++L+ A S ++LSF WI ADYLA+IKI+ R
Sbjct: 1118 KNDMYERKASAWYQVTYHPHWVARSLELQIPDA-VSSTVMLSFAWIAADYLARIKIRHR 1175
>gb|AFG54512.1| hypothetical protein 0_10048_01, partial [Pinus taeda]
Length = 125
Score = 100 bits (249), Expect = 2e-19
Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 9/105 (8%)
Frame = +2
Query: 38 VTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFA---------RDQSEAKASAWY 190
++++S+ ++KQ + KERL HAYRALR E+R F+G R + EAKASAWY
Sbjct: 1 ISTLSKLNSRKQ-GEIKERLQHAYRALRNEFRLIFQGKTDGEIPEPCKRSEYEAKASAWY 59
Query: 191 YVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQK 325
+VTYHPTWVQKA E E+ LLSFPWI DYLA+IK+QK
Sbjct: 60 HVTYHPTWVQKA-RELTELDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gb|AFG54505.1| hypothetical protein 0_10048_01, partial [Pinus taeda]
gi|383145808|gb|AFG54506.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145810|gb|AFG54507.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145812|gb|AFG54508.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145814|gb|AFG54509.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145816|gb|AFG54510.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145818|gb|AFG54511.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145822|gb|AFG54513.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145824|gb|AFG54514.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145826|gb|AFG54515.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145828|gb|AFG54516.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145830|gb|AFG54517.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145832|gb|AFG54518.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145834|gb|AFG54519.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145836|gb|AFG54520.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145838|gb|AFG54521.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
gi|383145840|gb|AFG54522.1| hypothetical protein
0_10048_01, partial [Pinus taeda]
Length = 125
Score = 100 bits (249), Expect = 2e-19
Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 9/105 (8%)
Frame = +2
Query: 38 VTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFA---------RDQSEAKASAWY 190
++++S+ ++KQ + KERL HAYRALR E+R F+G R + EAKASAWY
Sbjct: 1 ISTLSKLNSRKQ-GEIKERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWY 59
Query: 191 YVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQK 325
+VTYHPTWVQKA E E+ LLSFPWI DYLA+IK+QK
Sbjct: 60 HVTYHPTWVQKA-RELTELDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gb|AEW07730.1| hypothetical protein 0_10048_01, partial [Pinus radiata]
Length = 125
Score = 100 bits (249), Expect = 2e-19
Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 9/105 (8%)
Frame = +2
Query: 38 VTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFA---------RDQSEAKASAWY 190
++++S+ ++KQ + KERL HAYRALR E+R F+G R + EAKASAWY
Sbjct: 1 ISTLSKLNSRKQ-GEIKERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWY 59
Query: 191 YVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQK 325
+VTYHPTWVQKA + + P LLSFPWI DYLA+IK+QK
Sbjct: 60 HVTYHPTWVQKARELTESDGYFTSP-LLSFPWISVDYLAQIKLQK 103
>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
max] gi|571449461|ref|XP_006578148.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
max]
Length = 1204
Score = 100 bits (248), Expect = 3e-19
Identities = 57/125 (45%), Positives = 75/125 (60%), Gaps = 17/125 (13%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQSEA---- 172
VKRE EVV+G + S+ + ++KQ + KERL H+Y AL+KE+R FE D E
Sbjct: 1057 VKREEEVVTGQIWSMPKYNSRKQ-GELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEE 1115
Query: 173 -------KASAWYYVTYHPTWVQKALD------EANEIANCSHPLLLSFPWICADYLAKI 313
KASAWY VTYHP WV+K+LD E E + ++LSFPWI DYLA+
Sbjct: 1116 KNLLYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLART 1175
Query: 314 KIQKR 328
KI++R
Sbjct: 1176 KIRQR 1180
>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
Length = 1201
Score = 99.8 bits (247), Expect = 3e-19
Identities = 57/125 (45%), Positives = 75/125 (60%), Gaps = 17/125 (13%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQSEA---- 172
VKRE EVV+G + S+ + ++KQ + KERL H+Y AL+KE+R FE D E
Sbjct: 1056 VKREEEVVTGQIWSMPKYNSRKQ-GELKERLKHSYSALKKEFRQTFEKLDSDVRELGEEE 1114
Query: 173 -------KASAWYYVTYHPTWVQKALD------EANEIANCSHPLLLSFPWICADYLAKI 313
KASAWY VTYHPTWV+K+L+ E E + ++LSFPWI DYLA+
Sbjct: 1115 KNLLYEKKASAWYQVTYHPTWVKKSLELQDKSPENLESNSLGETVMLSFPWIAVDYLART 1174
Query: 314 KIQKR 328
KI+ R
Sbjct: 1175 KIRNR 1179
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 98.2 bits (243), Expect = 1e-18
Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFARDQS------ 166
VKRE EVV+G + S+ + ++K+ KERL H+Y LRKE+R FE D
Sbjct: 1055 VKREEEVVTGQIWSMPKHNSRKE-GDLKERLKHSYTGLRKEFRQVFEKVDSDFEQLTDDE 1113
Query: 167 -----EAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
E +ASAWY +TYHP WV+K+ D +++ + ++LSF WI ADYLA+IKI+ R
Sbjct: 1114 KNVLYEKRASAWYQITYHPKWVKKSQDMHDQLEEVKNVVMLSFAWIAADYLARIKIRCR 1172
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 98.2 bits (243), Expect = 1e-18
Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGFA---------- 154
V E EVV+G++ S+ + + KKQ + KERL HAY LRKE+RN FE
Sbjct: 1060 VNGEEEVVTGHIWSMPKYSAKKQ-GELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDE 1118
Query: 155 -RDQSEAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
D E KASAWY VTYHP WV ++L+ A S+ ++LSF WI ADY+A+IKI++R
Sbjct: 1119 KNDMYERKASAWYRVTYHPHWVTRSLELQLPDA-VSNGVMLSFAWIAADYIARIKIRQR 1176
>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
Length = 1197
Score = 98.2 bits (243), Expect = 1e-18
Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Frame = +2
Query: 5 VKREGEVVSGYVTSISRKATKKQHNQTKERLGHAYRALRKEYRNFFEGF----------- 151
VKRE EVV+G++ S+ K T ++ KE+LGH+Y ALRKE+R FE
Sbjct: 1059 VKREEEVVTGHIWSMP-KYTSRKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDE 1117
Query: 152 ARDQSEAKASAWYYVTYHPTWVQKALDEANEIANCSHPLLLSFPWICADYLAKIKIQKR 328
+ E KASAWY VTYHP WV+K L E + ++LSF WI ADYLA+IKI+ +
Sbjct: 1118 RNELYERKASAWYQVTYHPKWVEKKL-ELQKSDGADPVVMLSFAWIAADYLARIKIRSQ 1175