BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00005332
         (3372 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   980   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   951   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   949   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   949   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   948   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   941   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   939   0.0  
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...   936   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   932   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   929   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   928   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   928   0.0  
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   926   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   925   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   923   0.0  
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   923   0.0  
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   922   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   922   0.0  
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   921   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   920   0.0  

>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  980 bits (2533), Expect = 0.0
 Identities = 530/1039 (51%), Positives = 700/1039 (67%), Gaps = 18/1039 (1%)
 Frame = -1

Query: 3369 DLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIK 3190
            D+V  PR     + + ++Y G Q++   + +LWS+T +V  E    +KK+F  L   G+ 
Sbjct: 161  DIVPNPRVTYHVLESIQLYFGNQISEESFAILWSNT-NVKVEFGFGLKKIFFYLAHTGVD 219

Query: 3189 YMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDS-SSSADDAQGLEYYKYGS 3013
            Y L   + +I ++      + GT+YLV+ +  AP +F K  S SS   D+    YYK   
Sbjct: 220  YKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYYKDFP 279

Query: 3012 DTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPT 2833
            D  W+R+ DFT +  IGQ SS+C+ LPNG +  +I+  F  YK I G  +L+       +
Sbjct: 280  DEQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHS 339

Query: 2832 SRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSAL 2653
              LV           PY+IL+ VN LVQ G L  PTL  +F++LL       V   L  +
Sbjct: 340  LHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLVGPTLDTEFYNLLNGLPSPFVERSLEDI 399

Query: 2652 DEMYYSSPSFNPEKILKKSIHA-RNT-RRYADRNSYLDGGLVRIHRAQVTPTKIYLCRPE 2479
              +  ++    P K L++     RN  RR +     L+ GLV +HR QVTP+K+Y   PE
Sbjct: 400  SRL--TNCCLEPAKWLQEQYKKYRNLPRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPE 457

Query: 2478 VNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNG-DKLYTRLYQRVVSVLK 2302
            VNVSNRV+RQFS Y+D+FLR+SF+DED   + + DL ++M++G ++ +T +Y RV+S LK
Sbjct: 458  VNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLK 517

Query: 2301 EGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMG 2122
             GIVIG KKFEFLA+S+SQLR++S WMF+  + +TA NIR WMGDF  IRNVAKCAARMG
Sbjct: 518  NGIVIGDKKFEFLAFSSSQLRDNSAWMFSPIDGITAANIRQWMGDFSGIRNVAKCAARMG 577

Query: 2121 QSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTY-TP 1945
            QSF SS +TL V   EVE ++DI     N +YVFSDGIGKIS   A +VA  CGC+  TP
Sbjct: 578  QSFGSSTETLNVKPEEVERISDIK----NGKYVFSDGIGKISLEFAKKVALKCGCSEKTP 633

Query: 1944 SAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITL 1765
            SAFQIRYGGYKGVVAVDP S YKLSLR SM+K+ S +T +DVL+++KF+PCFLNRQ+ITL
Sbjct: 634  SAFQIRYGGYKGVVAVDPTSRYKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITL 693

Query: 1764 LSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEH 1585
            LSTLGV+D  FE  Q++ VS+LD++L + E+A E L++M  GE+ +V+ +ML CGY P+ 
Sbjct: 694  LSTLGVQDNVFETKQKDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDS 753

Query: 1584 EPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNS-- 1411
            EP+LSM+L  FR  KL ELK KTRIF+P GR +MGCLDE+G LEYG+VFVQ +   N   
Sbjct: 754  EPFLSMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRL 813

Query: 1410 -QFDGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQK 1234
             +F     +++      +V+ G+VIVAKNPCLHPGDV+IL  +D P LHHMVNCVVFPQK
Sbjct: 814  HEFGLSKINESGSDQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQK 873

Query: 1233 GERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFA 1054
            G+RPHPNECSGSDLDGD+YF+ WD  LIP    +PM Y   P   LDH+VT+ EI+E+F 
Sbjct: 874  GKRPHPNECSGSDLDGDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFT 933

Query: 1053 NYMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPK 874
            NYM+ND+LGII+  HTVFAD EP  A S  C+DLA LF++AVDFPKTGVPA++P  L  K
Sbjct: 934  NYMINDSLGIIANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVK 993

Query: 873  EYPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHN 694
            EYPDFM+K DK TY S+RVIG L+R +KD    + +I+SFT+ VA ++YD D+E   +  
Sbjct: 994  EYPDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFEL 1053

Query: 693  YIDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKAL 514
            Y+D A   K+ YD  LA +M HYGIK EAEIVSGNI S +K    R  + +AI + +++L
Sbjct: 1054 YLDDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILSLAKSFTKR-RDAEAIALAMRSL 1112

Query: 513  RKELRSFFETNVKALVADE---------YEMASAWYHITYHPQYWGYGDYTEKD-RSKPH 364
            RKE+R +F+   K  V DE         Y  ASAWYHITYHP+YW  G Y E+D R++ H
Sbjct: 1113 RKEVRGWFKE--KRSVVDEGDYSLDDDVYAKASAWYHITYHPEYW--GSYFEEDGRNRAH 1168

Query: 363  FISFPWIVHDKLLTIKRNK 307
            FISFPW ++DKL+ IKR++
Sbjct: 1169 FISFPWCIYDKLIHIKRHR 1187


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  951 bits (2459), Expect = 0.0
 Identities = 504/1041 (48%), Positives = 689/1041 (66%), Gaps = 9/1041 (0%)
 Frame = -1

Query: 3372 RDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGI 3193
            +D V RPR     +    ++ GC++++ ++ VLW    +V       M+K+  +L   G 
Sbjct: 86   QDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGV-NVTVNFGFGMRKINFLLSHLGE 144

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSA-DDAQGLEYYKYG 3016
            +Y L   + +I  +  +      TKYL++ L  AP +F K   S     ++    ++K  
Sbjct: 145  EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 204

Query: 3015 SDTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMP 2836
             D  W+RTTDFT +  IGQ + +C+ELP   +  D K  F  YK  +    L+       
Sbjct: 205  PDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSR 264

Query: 2835 TSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREK-TVHCILS 2659
            +  LV           PY+IL+ +NLLVQ G ++ P L  +F+ L+ P R   ++ CI  
Sbjct: 265  SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 324

Query: 2658 ALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLC 2488
            ALD++Y+     + P + L        T R    +    LD GLV +HR QVTP+++Y C
Sbjct: 325  ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 384

Query: 2487 RPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNG-DKLYTRLYQRVVS 2311
             PE+NVSNRV+R F R +D+FLR+SF+DED  ++H+ DL  + S+  D   TR+Y R++S
Sbjct: 385  GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILS 444

Query: 2310 VLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAA 2131
             L+ GI+IG +KFEFLA+S+SQLRESS WMFAS   +TA  IR WMG+F  IRNVAK AA
Sbjct: 445  TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAA 504

Query: 2130 RMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTY 1951
            R+GQSFSSS++TL V   E+E + D+ +  G  +YVFSDGIGK+SA  A +VAS CG   
Sbjct: 505  RLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 564

Query: 1950 TP-SAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQI 1774
             P SAFQIRYGGYKGVVA DP S+ KLSLR SM+K++S+ T +DVL+W+K++PCFLNRQ+
Sbjct: 565  NPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQL 624

Query: 1773 ITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYS 1594
            I+LLSTLG+ D+ FEK Q E V +LD +L +   A E L++M  GE+ +++ ++L CGY 
Sbjct: 625  ISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYK 684

Query: 1593 PEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQN 1414
            P+ EP+LSM+L  FRA+KLLEL+ KTRIF+P GR +MGCLDE+ TL YG+VFVQ++    
Sbjct: 685  PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 744

Query: 1413 SQFDGRDPSQTILRSNKK-VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQ 1237
             Q  G     +  RS ++ ++ G V+VAKNPCLHPGDV++L+ V+ P LHHMV+CVVFPQ
Sbjct: 745  RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 804

Query: 1236 KGERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFF 1057
            KG RPHPNECSGSDLDGD+YF+CWD+ LIPPQ + PM+Y     M LDHDV + +++E+F
Sbjct: 805  KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYF 864

Query: 1056 ANYMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNP 877
             NY++ND+LGII+  HTVFAD EP  ARS+ CL LA+ F++AVDFPKTGVPAE+P  L  
Sbjct: 865  TNYIVNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 924

Query: 876  KEYPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYH 697
            KEYPDFMEK DK TY S+ VIG L+RA+KD A  +  I  FT+EVA R+YD D+E   + 
Sbjct: 925  KEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE 984

Query: 696  NYIDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKA 517
            ++ID A   K  YD  L ++M +YGIK EAEI++G+I   SK    R  + +AI M V+A
Sbjct: 985  DHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR-RDAEAIGMAVRA 1043

Query: 516  LRKELRSFF-ETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIV 340
            LRKE R++F E +      D Y  ASAWYH+TYHP YWG  ++     ++ HF+SFPW V
Sbjct: 1044 LRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNH---GMNRDHFLSFPWCV 1100

Query: 339  HDKLLTIKRNKTKGSKLLPAL 277
            +D+L+ IK++KT      PAL
Sbjct: 1101 YDRLVEIKKDKTSIGNAFPAL 1121


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  949 bits (2453), Expect = 0.0
 Identities = 494/1015 (48%), Positives = 690/1015 (67%), Gaps = 7/1015 (0%)
 Frame = -1

Query: 3309 GCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSAS 3130
            GCQ++ +++ VL S+   + F +   +KK F  L      Y L  S+ +I ++  +    
Sbjct: 103  GCQISDDKFAVLGSTEVSIQFGI--GLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYG 160

Query: 3129 PGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSS 2950
               ++L++ L+ AP ++ + ++S  +       ++K   D  W+RTTDF  ++ IG  SS
Sbjct: 161  QNAQFLLIQLFGAPRIYKRLENSCYS-------FFKETPDDQWVRTTDFPPSW-IGLSSS 212

Query: 2949 ICVELPNGAKDKDIKGTFYNYKVIKGNLSLQ--MPFFPMPTSRLVXXXXXXXXXXXPYQI 2776
            +C++   G +  + + +F++Y   + N++LQ    FF    S LV           PY+I
Sbjct: 213  LCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKI 272

Query: 2775 LYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKK 2599
            L+ ++ LVQ G +  P L   FF L+ P R + V CI  AL+++YY     ++P + L +
Sbjct: 273  LFKISSLVQHGCIPGPALNVYFFRLVDP-RRRNVACIEHALEKLYYIKECCYDPVRWLTE 331

Query: 2598 SIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDF 2425
                    R   ++    LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+F
Sbjct: 332  QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 2424 LRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQ 2245
            LRVSFVDE+ ++L++ DL  K S G  + T +Y+R++S L++G VIG KKFEFLA+S+SQ
Sbjct: 392  LRVSFVDEEWEKLYSTDLLPKASTGSGVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQ 451

Query: 2244 LRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVED 2065
            LR++S+WMFAS   +TA +IR WMGDF  I+NVAK AAR+GQSF SSR+TL VL  E+E 
Sbjct: 452  LRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEV 511

Query: 2064 LNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFS 1885
            + D+ V   +  YVFSDGIGKIS   A  VAS CG  YTPSAFQIRYGGYKGVV VDP S
Sbjct: 512  IPDVKVHGTS--YVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDS 569

Query: 1884 TYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVS 1705
            + KLSLR SM K++S +  +DVL W+K++PC+LNRQ+ITLLSTLGV+D+  E+ Q+E V 
Sbjct: 570  SMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVD 629

Query: 1704 RLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELK 1525
            +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KLL+L+
Sbjct: 630  QLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLR 689

Query: 1524 VKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGRDPSQTILRSNKK-VIT 1351
             ++RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F D   P      +N   ++ 
Sbjct: 690  TRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILK 749

Query: 1350 GRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFI 1171
            G V+VAKNPCLHPGD+++L+ V+   LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+
Sbjct: 750  GNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 809

Query: 1170 CWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLNDALGIISARHTVFADS 991
            CWD+ +IPP+   PM Y   P + LDHDVT+ E++E+F NY++ND+LGII+  H VFAD 
Sbjct: 810  CWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADR 869

Query: 990  EPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDFMEKEDKHTYMSKRVIG 811
            EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPDFM+K DK +Y+S+RVIG
Sbjct: 870  EPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIG 929

Query: 810  NLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAAFNCKNYYDSSLASIMH 631
             L+R +KD A Q+ SI++FTR+VA R+YD D+E   + +YID AF+ K  YD+ L ++M 
Sbjct: 930  KLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMD 989

Query: 630  HYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELRSFFETNVKALVADEYE 451
            +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE R++F+   +  + D   
Sbjct: 990  YYGIKTEAEILSGGIMKASKTFD-RRKDAEAISVAVRALRKEARAWFKR--RNDIDDMLP 1046

Query: 450  MASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHDKLLTIKRNKTKGSKLL 286
             ASAWYH+TYHP YWG  +   K   + HFISFPW V+D+L+ IK++K +   +L
Sbjct: 1047 KASAWYHVTYHPTYWGCYNQGLK---RAHFISFPWCVYDQLIQIKKDKARNRPVL 1098


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  949 bits (2452), Expect = 0.0
 Identities = 496/1017 (48%), Positives = 692/1017 (68%), Gaps = 9/1017 (0%)
 Frame = -1

Query: 3309 GCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSAS 3130
            GCQ++ +++ VL S+   + F +   +KK F  L      Y L  S+ +I ++  +    
Sbjct: 103  GCQISEDKFAVLGSTEVSIKFGI--GLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYG 160

Query: 3129 PGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSS 2950
               ++L++ L+ AP ++ + ++S  +       ++K   D  W+RTTDFT ++ IG  SS
Sbjct: 161  QNAQFLLIQLFGAPRIYKRLENSCYS-------FFKETPDDQWVRTTDFTPSW-IGLSSS 212

Query: 2949 ICVELPNGAKDKDIKGTFYNYKVIKGNLSLQ--MPFFPMPTSRLVXXXXXXXXXXXPYQI 2776
            +C++   G    + + +F++Y   + N++LQ    FF    S LV           PY+I
Sbjct: 213  LCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKI 272

Query: 2775 LYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKK 2599
            L+ ++ LVQ G +  P L   FF L+ P R + V CI  AL+++YY     ++P + L +
Sbjct: 273  LFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTE 331

Query: 2598 SIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDF 2425
                    R   ++    LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+F
Sbjct: 332  QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 2424 LRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQ 2245
            LRVSFVDE+ ++L++ +L  K S G+ + T +Y+R++S L++G VIG KKFEFLA+S+SQ
Sbjct: 392  LRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQ 451

Query: 2244 LRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVED 2065
            LR++S+WMFAS   +T  +IR+WMGDF  I+NVAK AAR+GQSF SSR+TL VL  E+E 
Sbjct: 452  LRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEV 511

Query: 2064 LNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFS 1885
            + D+ V   +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAVDP+S
Sbjct: 512  IPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYS 569

Query: 1884 TYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVS 1705
            + KLSLR SM K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D   E+ Q+E V 
Sbjct: 570  SMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVH 629

Query: 1704 RLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELK 1525
            +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KLL+L+
Sbjct: 630  QLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLR 689

Query: 1524 VKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGRDPSQTILRSN-KKVIT 1351
             ++RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N   ++ 
Sbjct: 690  TRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILK 749

Query: 1350 GRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFI 1171
            G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+
Sbjct: 750  GNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 809

Query: 1170 CWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLNDALGIISARHTVFADS 991
            CWD+ +IPP+    M Y   P + LDH+VT+ E++E+F NY++ND+LGII+  H VFAD 
Sbjct: 810  CWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADR 869

Query: 990  EPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDFMEK-EDKHTYMSKRVI 814
            EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPDFM+K  DK TY+S+RVI
Sbjct: 870  EPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVI 929

Query: 813  GNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAAFNCKNYYDSSLASIM 634
            G L+R +KD A Q+ SI+ FTR+VA R+YD DLE   + +YID AF+ K  YD+ L ++M
Sbjct: 930  GKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLM 989

Query: 633  HHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELRSFFETNVKALVADEY 454
             +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE R++F+   +  + D  
Sbjct: 990  DYYGIKTEAEILSGGIMKASKTFD-RRKDAEAISVAVRALRKEARTWFKR--RNDIDDML 1046

Query: 453  EMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLLTIKRNKTKGSKLL 286
              ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L+ IK+ K +   +L
Sbjct: 1047 PKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQLIQIKKEKARNRPVL 1099


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  948 bits (2450), Expect = 0.0
 Identities = 498/1017 (48%), Positives = 689/1017 (67%), Gaps = 9/1017 (0%)
 Frame = -1

Query: 3309 GCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSAS 3130
            GCQ++ +++ VL S+   + F +   +KK F  L      Y L  S+ +I ++  +    
Sbjct: 103  GCQISDDKFAVLGSTEVSIKFGI--GLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYG 160

Query: 3129 PGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSS 2950
               ++L++ L+ AP ++ + ++S  +       ++K   D  W+RTTDF  ++ IG  SS
Sbjct: 161  QNAQFLLIQLFGAPRIYKRLENSCYS-------FFKETPDDQWVRTTDFAPSW-IGLSSS 212

Query: 2949 ICVELPNGAKDKDIKGTFYNYKVIKGNLSLQ--MPFFPMPTSRLVXXXXXXXXXXXPYQI 2776
            +C++   G    + + +F++Y   + N++LQ    FF    S LV           PY+I
Sbjct: 213  LCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKI 272

Query: 2775 LYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKK 2599
            L+ ++ LVQ G +  P L  +FF L+ P R + V CI  AL+++YY     ++P + L +
Sbjct: 273  LFKISSLVQHGCIPGPALNVNFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTE 331

Query: 2598 SIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDF 2425
                    R   ++    LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+F
Sbjct: 332  QYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 2424 LRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQ 2245
            LRVSFVDE+ ++L++ DL  K S G+ + T +Y R++S L++G VIG KKFEFLA+S+SQ
Sbjct: 392  LRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQ 451

Query: 2244 LRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVED 2065
            LR++S+WMFAS   +TA +IR WMGDF  I+NVAK AAR+GQSF SS++TL VL  E+E 
Sbjct: 452  LRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEI 511

Query: 2064 LNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFS 1885
            + D+ V   +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAVDP+S
Sbjct: 512  IPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYS 569

Query: 1884 TYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVS 1705
            + KLSLR SM K++S +  +DVL W+K++PCFLNRQ++TLLSTLGV+D   E+ Q+E V 
Sbjct: 570  SMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVD 629

Query: 1704 RLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELK 1525
            +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KLL+L+
Sbjct: 630  QLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLR 689

Query: 1524 VKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGRDPSQTILRSN-KKVIT 1351
             ++RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N   ++ 
Sbjct: 690  TRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILK 749

Query: 1350 GRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFI 1171
            G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+
Sbjct: 750  GNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 809

Query: 1170 CWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLNDALGIISARHTVFADS 991
            CWD+ +IPP+    M Y   P + LDHDVT+ E++E+F NY++ND+LGII+  H VFAD 
Sbjct: 810  CWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADR 869

Query: 990  EPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDFMEK-EDKHTYMSKRVI 814
            EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKEYPDFM+K  DK TY+S+RVI
Sbjct: 870  EPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVI 929

Query: 813  GNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAAFNCKNYYDSSLASIM 634
            G LYR +KD A Q+ S + FTR+VA R+YD DLE   + +YID AF+ K  YD+ L ++M
Sbjct: 930  GKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLM 989

Query: 633  HHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELRSFFETNVKALVADEY 454
             +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE R++F+   +  + D  
Sbjct: 990  DYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKEARTWFKR--RNDIDDML 1046

Query: 453  EMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLLTIKRNKTKGSKLL 286
              ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L+ IK+ K     +L
Sbjct: 1047 PKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQLIQIKKEKALNRPVL 1099


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  941 bits (2433), Expect = 0.0
 Identities = 495/1017 (48%), Positives = 687/1017 (67%), Gaps = 9/1017 (0%)
 Frame = -1

Query: 3309 GCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSAS 3130
            GCQ++ +++ VL S+   + F +   +KK F  L      Y L  S+ +I ++  +    
Sbjct: 103  GCQISDDKFAVLGSTEVSIKFGI--GLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYG 160

Query: 3129 PGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSS 2950
               ++L++ L+ AP ++ + ++S  +       ++K   D  W+RTTDF  ++ IG  SS
Sbjct: 161  QNAQFLLIQLFGAPRIYKRLENSCYS-------FFKETPDDQWVRTTDFAPSW-IGLSSS 212

Query: 2949 ICVELPNGAKDKDIKGTFYNYKVIKGNLSLQ--MPFFPMPTSRLVXXXXXXXXXXXPYQI 2776
            +C++   G    + + +F++Y   + N++LQ    FF    S LV           PY+I
Sbjct: 213  LCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKI 272

Query: 2775 LYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKK 2599
            L+ ++ LVQ G +  P L   FF L+ P R + V CI  AL+++YY     ++P + L +
Sbjct: 273  LFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTE 331

Query: 2598 SIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDF 2425
                    R   ++    LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+F
Sbjct: 332  QYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 391

Query: 2424 LRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQ 2245
            LRVSFVDE+ ++L++ DL  K S G+ + T +Y+R++S L++G VIG KKFEFLA+S+SQ
Sbjct: 392  LRVSFVDEEWEKLYSTDLLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQ 451

Query: 2244 LRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVED 2065
            LR++S+WMFAS   +TA +IR WMGDF  I+NVAK AAR+GQSF SS +TL VL  E+E 
Sbjct: 452  LRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEV 511

Query: 2064 LNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFS 1885
            + D+ V   +  YVFSDGIGKISA  A  VAS CG  +TPSAFQIRYGGYKGVVAVDP+S
Sbjct: 512  IPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQHTPSAFQIRYGGYKGVVAVDPYS 569

Query: 1884 TYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVS 1705
            + KLSLR SM K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D   E+ Q+E V 
Sbjct: 570  SMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVD 629

Query: 1704 RLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELK 1525
            +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KLL+L+
Sbjct: 630  QLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLR 689

Query: 1524 VKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGRDPSQTILRSN-KKVIT 1351
             K+RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N   ++ 
Sbjct: 690  TKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILK 749

Query: 1350 GRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFI 1171
            G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+
Sbjct: 750  GNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 809

Query: 1170 CWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLNDALGIISARHTVFADS 991
            CWD+ +IPP+    M Y   P + LDHDVT+ E++E+F NY++ND+LGII+  H VFAD 
Sbjct: 810  CWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADR 869

Query: 990  EPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDFMEK-EDKHTYMSKRVI 814
            EP+MA S  C  LA+L ++AVDFPKTGVPAE+P  L PKEYPDFM+K  DK TY+S+RVI
Sbjct: 870  EPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVI 929

Query: 813  GNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAAFNCKNYYDSSLASIM 634
            G LYR +KD A Q+ S + FTR+VA R+YD DLE   + +YID AF+ K  YD+ L ++M
Sbjct: 930  GKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLM 989

Query: 633  HHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELRSFFETNVKALVADEY 454
             +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE R++F+   +  + D  
Sbjct: 990  DYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKEARTWFKR--RNDIDDML 1046

Query: 453  EMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLLTIKRNKTKGSKLL 286
              ASAWYH+TYHP YWG Y    ++D    HFISFPW V+D+L+ IK+ K +   +L
Sbjct: 1047 PKASAWYHVTYHPTYWGCYNQGLKRD----HFISFPWCVYDQLIQIKKEKARNRPVL 1099


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  939 bits (2428), Expect = 0.0
 Identities = 505/1042 (48%), Positives = 684/1042 (65%), Gaps = 15/1042 (1%)
 Frame = -1

Query: 3369 DLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIK 3190
            D++ +PR     +    ++ GCQ++   +CVLW +  +V  +  + ++K +  L     +
Sbjct: 85   DIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI-NVSVKFGSGLRKFYFFLSHGSEE 143

Query: 3189 YMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYY-KYGS 3013
            Y L  S+ +I ++         TK+L++ L  AP ++ K        D   L YY K   
Sbjct: 144  YKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEK--------DVPVLSYYFKEAP 195

Query: 3012 DTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPT 2833
            D  W+R  DFT +  IGQ  ++C+ELP G++  + +  F  YK   G   L+        
Sbjct: 196  DDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHN 255

Query: 2832 SRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSAL 2653
              LV           P+QIL+ +N LVQ G LS PTL   FF L+ P R   +  I  AL
Sbjct: 256  LHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFP-ISFIEHAL 314

Query: 2652 DEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY-LDGGLVRIHRAQVTPTKIYLCRPE 2479
            +++Y+     + P + L +       +  A   +  LD GLV + R Q+TP K+Y C PE
Sbjct: 315  EKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPE 374

Query: 2478 VNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKE 2299
            VNVSNRV+R +   +D+FLRVSF+DE+ +++H+  +  +MS   +  T +Y+R++S+L+ 
Sbjct: 375  VNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEGRR-TGVYRRILSILQN 433

Query: 2298 GIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQ 2119
            GIVIG KKF+FLA+S+SQLR++S WMFAS   +TA  IR+WMGDF  IRNVAK AAR+GQ
Sbjct: 434  GIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQ 493

Query: 2118 SFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC-TYTPS 1942
            SFSSS++TL+V   E+E++ DI +  G   YVFSDGIGKIS  LA  VA  CGC + TPS
Sbjct: 494  SFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPS 553

Query: 1941 AFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLL 1762
            AFQIRYGGYKGVVAVDP S+ KLSLR SM K++S +T +DVL+W+K++P FLNRQ+ITLL
Sbjct: 554  AFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLL 613

Query: 1761 STLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHE 1582
            STLGV+D  FEK Q   V +LD +L +   A E L++M  GE+ +V+ +ML CGY P+ E
Sbjct: 614  STLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAE 673

Query: 1581 PYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFD 1402
            P+LSM+L  FRAAKLLEL+ KTRIFVP GR +MGCLDE+ TLEYGEVFVQ++     Q  
Sbjct: 674  PFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSF 733

Query: 1401 GRDPSQTILRSNKK-----VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQ 1237
            G      + R +       ++ G+++VAKNPCLHPGDV++L  V+ P LHHMV+CVVFPQ
Sbjct: 734  G---DSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQ 790

Query: 1236 KGERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFF 1057
            KG+RPHPNECSGSDLDGD+YF+CWD  LIPPQ  +PM+Y   P   LDHDV + E++E+F
Sbjct: 791  KGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYF 850

Query: 1056 ANYMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNP 877
             NY++ND+LGII+  HTVFAD E + A    C +LAKLF++AVDFPKTGVPAE+P  L  
Sbjct: 851  TNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRV 910

Query: 876  KEYPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYH 697
            KEYPDFMEK DK TY S+ VIG L+R +KD A  + +I SFTR+VA ++YD D+E   + 
Sbjct: 911  KEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFE 970

Query: 696  NYIDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKA 517
            +Y+  AF  K+ YD  L ++M +YGIK E+EI+SG+I   SK    R  + +AI + VK+
Sbjct: 971  DYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFD-RRKDAEAIGLAVKS 1029

Query: 516  LRKELRSFF-----ETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFIS 355
            LRKE R++F     ET+ +A   D Y  ASAWYH+TYHP YWG Y +  ++D    HF+S
Sbjct: 1030 LRKEARTWFNKMGSETDSEA--DDVYAKASAWYHVTYHPDYWGCYNEGMDRD----HFLS 1083

Query: 354  FPWIVHDKLLTIKRNKTKGSKL 289
            FPW V+DKL+  KR K  G  L
Sbjct: 1084 FPWCVYDKLIHTKRKKMSGRSL 1105


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score =  936 bits (2420), Expect = 0.0
 Identities = 496/1031 (48%), Positives = 682/1031 (66%), Gaps = 3/1031 (0%)
 Frame = -1

Query: 3372 RDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGI 3193
            ++LV+ P      +    ++ GCQ++ N++ VLWS +  V  +    +K +  +L D   
Sbjct: 82   KELVRNPATNLQLIDQVTLHFGCQISGNKFSVLWSCSD-VTVKFGTQLKTISFILFDGLY 140

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGS 3013
             YML  S+ SI +   Y  +S G + L++ L+ AP +  K + S  +       YY   +
Sbjct: 141  NYMLQLSYKSIWKTVLYNPSS-GRRKLLIQLFGAPRISKKVEGSPYS-------YYNVYT 192

Query: 3012 DTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPT 2833
            +  W+RTTDFT    IGQ S +C+E P+G++    +  F  +K  +    LQ  +     
Sbjct: 193  EDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDDFVYFKEKEEEFHLQEGYSFSQN 252

Query: 2832 SRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSAL 2653
            S L            PY I++ +  LVQ G +  P L  +F+ ++ P +   +  I  AL
Sbjct: 253  SVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRMVNP-QLVDIRYIEHAL 311

Query: 2652 DEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSYLDGGLVRIHRAQVTPTKIYLCRPEV 2476
            ++++Y     ++P K L+       T + +     L+GGLV + R Q+TP+++Y   PE+
Sbjct: 312  EKIFYLKECCYDPVKWLESQYRRYQTSKPSSPTISLEGGLVYVRRVQITPSRVYFTGPEI 371

Query: 2475 NVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEG 2296
            NVSNRV+RQ+   +DDFLRVSFVDED  +L +  L  K   G    TR+Y+R++SVL+EG
Sbjct: 372  NVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSKTEIGK---TRIYERILSVLREG 428

Query: 2295 IVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQS 2116
            I IG K+F+FLA+S+SQLRE+SLWMFA +  VTA++IR WMGDF SIRNVAK AAR+GQS
Sbjct: 429  IRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIRKWMGDFRSIRNVAKYAARLGQS 488

Query: 2115 FSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTY-TPSA 1939
            F SS +TL V   E   + DIT  +G++ Y FSDGIGKISA  A  VA+ C  T+  PSA
Sbjct: 489  FGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDGIGKISADFARRVAAKCRFTHRVPSA 548

Query: 1938 FQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLS 1759
            FQIRYGG+KGVVAVDP S  KLSLRPSMKK++S +T +DVLSW+K+ PCFLNRQIITLLS
Sbjct: 549  FQIRYGGFKGVVAVDPSSNMKLSLRPSMKKYESDNTKLDVLSWSKYLPCFLNRQIITLLS 608

Query: 1758 TLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEP 1579
            TLGVED+ F K Q E V++LD++L +   A EVL +M  GE+  ++ +ML+CGY P+ EP
Sbjct: 609  TLGVEDRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGENSHILKEMLKCGYKPDEEP 668

Query: 1578 YLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDG 1399
            +LSM+L AFR++KLL+L+ K+RIFVPE R LMGCLDE+GTLEYGEVFVQ++  +  QF  
Sbjct: 669  FLSMMLRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLEYGEVFVQISGSRQRQFFF 728

Query: 1398 RDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPH 1219
              P+   +     V++G V VAKNPCLHPGD+++++ VD P LHHMV+C+VFPQKG RP 
Sbjct: 729  DGPAVGTVNDYNSVVSGTVFVAKNPCLHPGDIRVVKAVDVPILHHMVDCLVFPQKGHRPL 788

Query: 1218 PNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLN 1039
            P+ECSGSDLDGD+YF+CWD  L P Q + PM+Y   P   LDHDVT+ E+Q++F +Y++N
Sbjct: 789  PDECSGSDLDGDIYFVCWDTDLFPLQQDPPMDYDPAPTTRLDHDVTMQEVQKYFTDYIVN 848

Query: 1038 DALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDF 859
            D LG+I+  HT FAD E   ARS  CL+LAKLF++AVDFPKTGVPA +P  L  KE+PDF
Sbjct: 849  DTLGVIANAHTAFADRERAKARSPPCLELAKLFSVAVDFPKTGVPANIPYNLRVKEFPDF 908

Query: 858  MEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAA 679
            MEK D+ +Y S+ V+G LYR ++D  ++  SI++FTR+VA R+YD DLE   Y +Y++ A
Sbjct: 909  MEKSDRVSYQSENVLGKLYREVRD--IEPLSITAFTRDVAERSYDPDLEIPGYEDYVEEA 966

Query: 678  FNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELR 499
             + K+ YD  L ++M +YG+K EAE+++G I   SK    R  + +A+   V+ALR E R
Sbjct: 967  HSYKDEYDYKLGNLMDYYGVKTEAEMLTGGILKMSKTFD-RRKDAEAVADAVRALRNEAR 1025

Query: 498  SFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLLT 322
            S+F    +A   D Y  ASAWYH+TYHP YWG Y +   +D    HFISFPW VHDKL+ 
Sbjct: 1026 SWF----RAEDDDAYAKASAWYHVTYHPDYWGCYNEGLRRD----HFISFPWCVHDKLIK 1077

Query: 321  IKRNKTKGSKL 289
            IKR+  +   L
Sbjct: 1078 IKRDSVRSQGL 1088


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  932 bits (2410), Expect = 0.0
 Identities = 492/1035 (47%), Positives = 682/1035 (65%), Gaps = 9/1035 (0%)
 Frame = -1

Query: 3363 VKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYM 3184
            + +PR     +    +  GCQ++  ++ VL S    + F +   +KK++  L      Y 
Sbjct: 85   IVQPRTYVQHMDGVTLNFGCQISDKKFAVLGSKVVSIKFGI--GLKKIYFFLSYGSTDYK 142

Query: 3183 LVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYK-EDSSSSADDAQGLEYYKYGSDT 3007
            L  S+ +I ++  +       ++L++ L  AP ++ + EDS  S        ++K   D 
Sbjct: 143  LQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYKRLEDSCYS--------FFKETPDD 194

Query: 3006 NWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPF---FPMP 2836
             W+RTTDFT ++ IG  SS+C+E  NG +  +   +F+ YK     + LQ  F   F   
Sbjct: 195  QWVRTTDFTPSW-IGLSSSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQK 253

Query: 2835 TSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSA 2656
               LV           PY+IL+ ++ L+Q G      L  +FF L+ P R + + CI  A
Sbjct: 254  KLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDP-RRRNIACIEHA 312

Query: 2655 LDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLCR 2485
            L+++YY     ++P + L +       RR   ++    LD GLV + R  VTP K+Y C 
Sbjct: 313  LEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCG 372

Query: 2484 PEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVL 2305
            PEVNVSNRV+R +S  +D+FLRVSFVDE+ +++H+ DL  + S G+ + T +Y R++S L
Sbjct: 373  PEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVRTDIYLRILSTL 432

Query: 2304 KEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARM 2125
            + G VIG KKFEFLA+S+SQLR++S+WMFAS   +TA +IR WMG F  IRNVAK AAR+
Sbjct: 433  RNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARL 492

Query: 2124 GQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTP 1945
            GQSF SSR+TL V   EVE + D+        Y+FSDGIGKISA  A  VA  CG  YTP
Sbjct: 493  GQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYTP 552

Query: 1944 SAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITL 1765
            S FQIRYGGYKGVVAVDP+S+ KLSLR SM K++S +  +DVL W+K++PC+LNRQ++TL
Sbjct: 553  SCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTL 612

Query: 1764 LSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEH 1585
            LSTLGV+D  FE+ Q E V +LD +L++   A E L++M  GE+ +++ +ML CGY P+ 
Sbjct: 613  LSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDA 672

Query: 1584 EPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF 1405
            EP+LSM+L  FRA+KLL+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T     QF
Sbjct: 673  EPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQF 732

Query: 1404 -DGRDPSQTILRSN-KKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKG 1231
             +   P      +N   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG
Sbjct: 733  YEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKG 792

Query: 1230 ERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFAN 1051
            +RPHPNECSGSDLDGD+YF+CWD  L+PP+   PM+Y   P   LDHDVT+ E++E+F N
Sbjct: 793  KRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTN 852

Query: 1050 YMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKE 871
            Y++ND+LGII+  H VFAD EP+MA S  C  LA+LF++AVDFPKTGVPAE+PS L PKE
Sbjct: 853  YIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKE 912

Query: 870  YPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNY 691
            YPDFMEK DK TY S++VIG L++ +KD   Q+ SI++FT +VA ++YD D+    + +Y
Sbjct: 913  YPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDY 972

Query: 690  IDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALR 511
            ID AF  K+ YD+ L ++M +YGIK EAEI+SG I   SK    R  + DAI + V++LR
Sbjct: 973  IDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD-RRKDADAIGVAVRSLR 1031

Query: 510  KELRSFFETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHDK 331
            KE R++F+   ++ + D    ASAWYH+TYH  YWG+  Y E    + HFISFPW ++D+
Sbjct: 1032 KEARTWFKR--RSDIDDMLAKASAWYHVTYHHTYWGF--YNE-GLKRDHFISFPWCIYDQ 1086

Query: 330  LLTIKRNKTKGSKLL 286
            L+ IK+ K +   +L
Sbjct: 1087 LIQIKKAKARKKPVL 1101


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  929 bits (2400), Expect = 0.0
 Identities = 500/1046 (47%), Positives = 689/1046 (65%), Gaps = 14/1046 (1%)
 Frame = -1

Query: 3372 RDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGI 3193
            RD++ +PR     + +  ++ G Q +  ++  +WS   +V       M+K+   L  +  
Sbjct: 84   RDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN-NVSVNFGLGMRKLHFFLSHNLA 142

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKE-DSSSSADDAQGLEYYKYG 3016
            +Y L   F +I ++  +       KYL++ LY AP ++ ++  SSS+  +   L Y++  
Sbjct: 143  EYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDV 202

Query: 3015 SDTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMP 2836
             D  W+RTTDFT + GIG  SS+C+ELPN  +  +    F+ YK  +G   L+       
Sbjct: 203  PDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSR 262

Query: 2835 TSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSA 2656
               LV           PY IL+ VNLLVQ G L+   L   F+ L+ P R   V CI  A
Sbjct: 263  NPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNR-MPVRCIEYA 321

Query: 2655 LDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSYL--DGGLVRIHRAQVTPTKIYLCR 2485
            L+++Y+     + P K   +      T     R+  L  D GLV +++ Q+TP K++ C 
Sbjct: 322  LEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCG 381

Query: 2484 PEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLY-TRLYQRVVSV 2308
            PEVNVSNRV+RQ+   +D+FLRVSFVDE+ +++H+ D+  + S+ ++L  T +Y R++S 
Sbjct: 382  PEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILST 441

Query: 2307 LKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAAR 2128
            L+ GIVIG KKFEFLA+S+SQLRE+S WMFAS   +TA +IR WMG F  IRNVA+ AAR
Sbjct: 442  LQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAAR 501

Query: 2127 MGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-Y 1951
            +GQSF SS +TL V   E+E + DI V  G  RY+FSDGIGKISA  A +VA  CGC  +
Sbjct: 502  LGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGF 561

Query: 1950 TPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQII 1771
            TPSAFQIRY GYKGVVAVDP S+ KLSLR SM K++S++T +DVL+ +K++PCFLNRQ+I
Sbjct: 562  TPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLI 621

Query: 1770 TLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSP 1591
            TLLSTLGV D  FE+ Q E V +LD +L +   A E L++M  GE+ +++ +ML CGY P
Sbjct: 622  TLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQP 681

Query: 1590 EHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQ-N 1414
            + EP+LSM+L  FRA+KLLEL+ KTRIF+P GR +MGCLDE+ TLE+G+VFV+ +  +  
Sbjct: 682  DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFR 741

Query: 1413 SQFDGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQK 1234
            + +D  D      R    +I G V+VAKNPCLHPGD++IL+ VD P LHHMV+CVVFPQK
Sbjct: 742  NLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQK 801

Query: 1233 GERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFA 1054
            G RPHPNECSGSDLDGD+YF+CWD  LIP Q  SPM+Y   P + LDHDVT+ E++E+F 
Sbjct: 802  GPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFT 861

Query: 1053 NYMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPK 874
            NY++ND+LG+I+  HT  AD E   A S+ C++LA+ F++AVDFPKTGVPAE+PS L  +
Sbjct: 862  NYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAR 921

Query: 873  EYPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHN 694
            EYPDFMEK DK +Y S+ VIG L+R +KD A ++ SI SFT +VA + YD D+E   + +
Sbjct: 922  EYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFED 981

Query: 693  YIDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKAL 514
            YID AF  K+ YD  L ++M +YGIK EAE++SG+    SK    +  + +AI M V++L
Sbjct: 982  YIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSF-TKKRDAEAIGMAVRSL 1040

Query: 513  RKELRSFFETNVKAL--VADEYE-MASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPW 346
            +KE RS+F      L   AD+ +  ASAWYH+TYH  YWG Y +   +D    HF+SFPW
Sbjct: 1041 KKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRD----HFLSFPW 1096

Query: 345  IVHDKLLTIKRN---KTKGSKLLPAL 277
             V+DKL+ IKR    + + S +LP++
Sbjct: 1097 CVYDKLIQIKRRNSARIRRSLILPSV 1122


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  928 bits (2398), Expect = 0.0
 Identities = 500/1027 (48%), Positives = 673/1027 (65%), Gaps = 7/1027 (0%)
 Frame = -1

Query: 3372 RDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGI 3193
            +D+V +PR     ++  ++Y GCQV+  +   LWS+  +V       M+K+   +  +  
Sbjct: 84   QDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSAH-NVCVSFGTGMRKLHFSMSWYQK 142

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGS 3013
             Y L  S+ +I ++  +      +K+LV+ +  AP +F KED   +      +++Y  GS
Sbjct: 143  DYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKIFEKEDQPVNFLFGM-MDFYSDGS 201

Query: 3012 DTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMP--FFPM 2839
            D  WIRTTDFT +  IGQ ++ C+ELP      D +  F NY   + +  L      +  
Sbjct: 202  DEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPDFRENFANYAEHRASTFLIQSGSSYSS 261

Query: 2838 PTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILS 2659
              ++LV           P++IL+ VN LVQ   L  P L  +F+ LL P +      I  
Sbjct: 262  NANKLVPVVDPPPGFDLPFEILFKVNTLVQNACLPGPALDLEFYQLLNPKKYDRA-LIDH 320

Query: 2658 ALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLC 2488
            +L+++++     + P + L++     N+ +    +    LD GLV I+R  VTP ++Y  
Sbjct: 321  SLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLSPTISLDDGLVYIYRVLVTPARVYFL 380

Query: 2487 RPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSV 2308
             PEVNVSNRV+R +S Y+++FLR+SFVDED +++H+ DL  + S   +  T+LY R+ SV
Sbjct: 381  GPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIHSMDLSPRSSTQRR--TKLYDRIYSV 438

Query: 2307 LKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAAR 2128
            L++GIVIG KKFEFLA+S+SQLRE+S WMFA  + +TA +IR WMGDF  IRNVAK AAR
Sbjct: 439  LRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPRDRLTAAHIRAWMGDFDHIRNVAKYAAR 498

Query: 2127 MGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-Y 1951
            +GQSFSSSR+TL V   E+E + D+     + RYVFSDGIGKISA  A +VA  CG T +
Sbjct: 499  LGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTRYVFSDGIGKISAEFARKVAKKCGLTEF 558

Query: 1950 TPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQII 1771
            +PSAFQIRYGGYKGVVAVDP S+ KLSLR SM KF+S +T +DVL+W+K++PC+LNRQII
Sbjct: 559  SPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESGNTKLDVLAWSKYQPCYLNRQII 618

Query: 1770 TLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSP 1591
            TLLSTLGV+D  FEK Q EVV RLD +L +   A E L +M  GE+ +++ ++L CGY P
Sbjct: 619  TLLSTLGVKDNVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKQLLLCGYKP 678

Query: 1590 EHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNS 1411
            + EP+LSM+L  FRA+KLLEL+ KTRIF+P GR +MGCLDE+ TLEYG+V VQ + P   
Sbjct: 679  DAEPFLSMMLQNFRASKLLELRTKTRIFIPGGRSMMGCLDETRTLEYGQVVVQYSNPT-- 736

Query: 1410 QFDGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKG 1231
                       +   + +ITG V+VAKNPCLHPGDV++LQ V+ P L+HMV+CVVFPQKG
Sbjct: 737  -----------MPGKRYIITGPVVVAKNPCLHPGDVRVLQAVNVPALYHMVDCVVFPQKG 785

Query: 1230 ERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFAN 1051
             RPHPNECSGSDLDGD+YFICWD  LIPP+   PM+Y   P   LDHDVT+ E++E+FAN
Sbjct: 786  SRPHPNECSGSDLDGDIYFICWDHELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFAN 845

Query: 1050 YMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKE 871
            Y++ND+LGII+  HT FAD EP  A S  C++LA+ F++AVDFPKTG+ AE+P  L  KE
Sbjct: 846  YIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSIAVDFPKTGIAAEIPQHLYVKE 905

Query: 870  YPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNY 691
            YPDFM+K DK TY SK VIG L+R +K+ A    SI SFT +VA ++YDKD+E   +  Y
Sbjct: 906  YPDFMDKPDKPTYESKNVIGKLFREVKERAPPLISIRSFTLDVALKSYDKDMEVEGFEEY 965

Query: 690  IDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALR 511
            ID AF  K  YD  L ++M +YGIK EAEI+SG I   SK    R  + ++I   V+ALR
Sbjct: 966  IDEAFFHKGNYDYRLGNLMDYYGIKTEAEILSGGIMRMSKSFTKR-RDAESIGRAVRALR 1024

Query: 510  KELRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHD 334
            KE  S+F         DE   ASAWYH+TYH  YWG Y +   +D    HF+SF W V+D
Sbjct: 1025 KEALSWFNNAEDKNDFDESAKASAWYHVTYHSSYWGVYNEGLNRD----HFLSFAWCVYD 1080

Query: 333  KLLTIKR 313
            KL+ IK+
Sbjct: 1081 KLVRIKK 1087


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  928 bits (2398), Expect = 0.0
 Identities = 508/1044 (48%), Positives = 688/1044 (65%), Gaps = 8/1044 (0%)
 Frame = -1

Query: 3369 DLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIK 3190
            D+V +PR     +    +++GCQV  +++ VLW  T  V  +    M+ +   L+     
Sbjct: 83   DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG-TAEVSVDFGFGMRNLQFRLLYRQKV 141

Query: 3189 YMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSD 3010
            Y L  S+ +I ++  +       KYLV+ LY  P ++ +E  SS  +  + + Y++   D
Sbjct: 142  YRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYEDMNYFRDPDD 201

Query: 3009 TNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTS 2830
              W+RTTDFT    IGQ SS+C+ L +  +  D +  F  YK   G   L+         
Sbjct: 202  --WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNR 259

Query: 2829 RLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALD 2650
             LV           PY IL+ +NLLVQ+G LS PTL  +F+ L+ P R     CI  ALD
Sbjct: 260  DLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRP-CIEFALD 318

Query: 2649 EMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLCRPE 2479
            ++     S + P   L +        +   + +   LD GLV + R Q+TP+K+Y   PE
Sbjct: 319  KLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISLDSGLVYVRRVQITPSKVYFSGPE 378

Query: 2478 VNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKE 2299
            VNVSNR++RQ+S  +D+FLRVSFVDE+ ++L++ DL  + S      TR+Y RV+SVL++
Sbjct: 379  VNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSPRTSTRK---TRIYNRVLSVLRD 435

Query: 2298 GIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQ 2119
            GIV+G+KKFEFLA+S+SQLRE+SLWMFA  +  +A+ IR  MGDF  IRNVAK AAR+GQ
Sbjct: 436  GIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTIRAGMGDFRQIRNVAKYAARLGQ 495

Query: 2118 SFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC-TYTPS 1942
            SF SS +TL V   E+E + D+TV S   +YVFSDGIGKISA  A  VA  CG   +TPS
Sbjct: 496  SFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPS 555

Query: 1941 AFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLL 1762
            AFQIRYGGYKGVVAVDP S+ KLSLR SM K++S++T +DVL+ +K++PCFLNRQ+ITLL
Sbjct: 556  AFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLL 615

Query: 1761 STLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHE 1582
            STL V+D  F K Q   V +L+ +L +   A E L +M  GE  +V+ ++L CGY P  E
Sbjct: 616  STLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVE 675

Query: 1581 PYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQ-F 1405
            P+LSM+L  FRA+KLLEL+ KTRIF+P+GR +MGCLDE+ TLEYG+VFVQ +  +  Q F
Sbjct: 676  PFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLF 735

Query: 1404 DGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGER 1225
            D      ++   +  +I G+V+VAKNPCLHPGDV++L+ V+ P LHHMV+CVVFPQKG R
Sbjct: 736  DDICIHSSL--DSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHR 793

Query: 1224 PHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFANYM 1045
            PHPNECSGSDLDGD+YF+CWD  LIPP+   PM+Y   P + +D DVT+ E++E+F NY+
Sbjct: 794  PHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYI 853

Query: 1044 LNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYP 865
            +ND+LGII+  HTVFADS+ + A S  CL LAKLF++AVDFPKTGVPAE+P  L  KEYP
Sbjct: 854  VNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYP 913

Query: 864  DFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYID 685
            DFMEK DK TY+S  VIG L+R +KD A    SI+SFTR+VA + YD D+E   + +Y++
Sbjct: 914  DFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLE 973

Query: 684  AAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKE 505
             AF  K  YD  L +++ +YGIK EAEI+SG+I + SK    R  + DAI + VK+LRKE
Sbjct: 974  DAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSKSFTKR-RDADAINVAVKSLRKE 1032

Query: 504  LRSFF---ETNVKALVADEYEMASAWYHITYHPQYWGYGDYTEKDRSKPHFISFPWIVHD 334
             R++F   +T + +   D Y  ASAWYH+TYHP Y+G   Y E   ++ HFISFPW V D
Sbjct: 1033 ARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGL--YNE-GMNRAHFISFPWCVFD 1089

Query: 333  KLLTIKRNKTKGSKLLPALFSDLK 262
            KL  IK+ K   ++L+ +L + L+
Sbjct: 1090 KLGHIKKEKVNQARLISSLENRLR 1113


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  926 bits (2393), Expect = 0.0
 Identities = 480/948 (50%), Positives = 658/948 (69%), Gaps = 9/948 (0%)
 Frame = -1

Query: 3102 LYCAPSVFYKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICVELPNGA 2923
            L+ AP ++ + ++S  +       ++K   D  W+RTTDFT ++ IG  SS+C++   G 
Sbjct: 18   LFGAPRIYKRLENSCYS-------FFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGV 69

Query: 2922 KDKDIKGTFYNYKVIKGNLSLQ--MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQ 2749
               + + +F++Y   + N++LQ    FF    S LV           PY+IL+ ++ LVQ
Sbjct: 70   HLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQ 129

Query: 2748 EGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKKSIHARNTRR 2572
             G +  P L   FF L+ P R + V CI  AL+++YY     ++P + L +        R
Sbjct: 130  HGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGR 188

Query: 2571 YADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDED 2398
               ++    LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+
Sbjct: 189  QPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEE 248

Query: 2397 GKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMF 2218
             ++L++ +L  K S G+ + T +Y+R++S L++G VIG KKFEFLA+S+SQLR++S+WMF
Sbjct: 249  WEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMF 308

Query: 2217 ASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSG 2038
            AS   +T  +IR+WMGDF  I+NVAK AAR+GQSF SSR+TL VL  E+E + D+ V   
Sbjct: 309  ASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVHGT 368

Query: 2037 NERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPS 1858
            +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR S
Sbjct: 369  S--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKS 426

Query: 1857 MKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNK 1678
            M K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D   E+ Q+E V +LD +L++ 
Sbjct: 427  MSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDS 486

Query: 1677 ETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPE 1498
              A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KLL+L+ ++RIF+P 
Sbjct: 487  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPN 546

Query: 1497 GRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGRDPSQTILRSN-KKVITGRVIVAKNP 1324
            GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N   ++ G V+VAKNP
Sbjct: 547  GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 606

Query: 1323 CLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPP 1144
            CLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP
Sbjct: 607  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 666

Query: 1143 QVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLNDALGIISARHTVFADSEPEMARSKS 964
            +    M Y   P + LDH+VT+ E++E+F NY++ND+LGII+  H VFAD EP+MA S  
Sbjct: 667  RQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDP 726

Query: 963  CLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDFMEK-EDKHTYMSKRVIGNLYRAIKD 787
            C  LA+LF++AVDFPKTGVPAE+PS L PKEYPDFM+K  DK TY+S+RVIG L+R +KD
Sbjct: 727  CKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKD 786

Query: 786  YAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAAFNCKNYYDSSLASIMHHYGIKYEA 607
             A Q+ SI+ FTR+VA R+YD DLE   + +YID AF+ K  YD+ L ++M +YGIK EA
Sbjct: 787  KAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEA 846

Query: 606  EIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELRSFFETNVKALVADEYEMASAWYHI 427
            EI+SG I   SK    R  + +AI + V+ALRKE R++F+   +  + D    ASAWYH+
Sbjct: 847  EILSGGIMKASKTFD-RRKDAEAISVAVRALRKEARTWFKR--RNDIDDMLPKASAWYHV 903

Query: 426  TYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLLTIKRNKTKGSKLL 286
            TYHP YWG Y    ++D    HFISFPW V+D+L+ IK+ K +   +L
Sbjct: 904  TYHPTYWGCYNQGLKRD----HFISFPWCVYDQLIQIKKEKARNRPVL 947


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  925 bits (2391), Expect = 0.0
 Identities = 482/948 (50%), Positives = 654/948 (68%), Gaps = 9/948 (0%)
 Frame = -1

Query: 3102 LYCAPSVFYKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSSICVELPNGA 2923
            L+ AP ++ + ++S  +       ++K   D  W+RTTDF  ++ IG  SS+C++   G 
Sbjct: 18   LFGAPRIYKRLENSCYS-------FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGV 69

Query: 2922 KDKDIKGTFYNYKVIKGNLSLQ--MPFFPMPTSRLVXXXXXXXXXXXPYQILYHVNLLVQ 2749
               + +  F++Y   + N++LQ    FF    S LV           PY+IL+ ++ LVQ
Sbjct: 70   HLPNFQEKFFHYAERENNITLQTGFTFFISQKSSLVPNVQPPEGIAIPYKILFKISSLVQ 129

Query: 2748 EGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKKSIHARNTRR 2572
             G +  P L   FF L+ P R + V CI  AL+++YY     ++P + L +        R
Sbjct: 130  HGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGR 188

Query: 2571 YADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDED 2398
               ++    LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+FLRVSFVDE+
Sbjct: 189  QPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEE 248

Query: 2397 GKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMF 2218
             ++L++ +L  K S G+ + T +Y+R++S L++G VIG KK EFLA+S+SQLR++S+WMF
Sbjct: 249  WEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSVWMF 308

Query: 2217 ASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVEDLNDITVGSG 2038
            AS   +TA +IR WMGDF  I+NVAK AAR+GQSF SS++TL VL  E+E + D+ V   
Sbjct: 309  ASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVHGT 368

Query: 2037 NERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPS 1858
            +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAVDP+S+ KLSLR S
Sbjct: 369  S--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKS 426

Query: 1857 MKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNK 1678
            M K++S +  +DVL W+K++PC+LNRQ+ITLLSTLGV+D   E+ Q+E V +LD +L++ 
Sbjct: 427  MSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAILHDS 486

Query: 1677 ETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPE 1498
              A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KLL+L+ K+RIF+P 
Sbjct: 487  LKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPN 546

Query: 1497 GRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGRDPSQTILRSN-KKVITGRVIVAKNP 1324
            GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N   ++ G V+VAKNP
Sbjct: 547  GRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNP 606

Query: 1323 CLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFICWDESLIPP 1144
            CLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+CWD+ +IPP
Sbjct: 607  CLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPP 666

Query: 1143 QVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLNDALGIISARHTVFADSEPEMARSKS 964
            +   PM Y   P + LDHDVT+ E++E+F NY++ND+LGIIS  H VFAD EP+MA S  
Sbjct: 667  RQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDP 726

Query: 963  CLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDFMEK-EDKHTYMSKRVIGNLYRAIKD 787
            C  LA+L ++AVDFPKTGVPAE+PS L PKEYPDFM+K  DK TY+S+RVIG L+R +KD
Sbjct: 727  CKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKD 786

Query: 786  YAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAAFNCKNYYDSSLASIMHHYGIKYEA 607
             A Q+ S + FTR+VA R+YD DLE   + +YID AF+ K  YDS L ++M +YGIK EA
Sbjct: 787  KAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEA 846

Query: 606  EIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELRSFFETNVKALVADEYEMASAWYHI 427
            EI+SG I   SK    R  + +AI + V+ALRKE R++F+ +    + D    ASAWYH+
Sbjct: 847  EILSGGIMKTSKTFD-RRKDAEAISIAVRALRKEARTWFKRHND--IDDMLPKASAWYHV 903

Query: 426  TYHPQYWG-YGDYTEKDRSKPHFISFPWIVHDKLLTIKRNKTKGSKLL 286
            TYHP YWG Y    ++D    HFISFPW V+D+L+ IK+ K +   +L
Sbjct: 904  TYHPTYWGCYNQGLKRD----HFISFPWCVYDQLIQIKKEKARNRPVL 947


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  923 bits (2385), Expect = 0.0
 Identities = 497/1035 (48%), Positives = 672/1035 (64%), Gaps = 12/1035 (1%)
 Frame = -1

Query: 3369 DLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCA-NMKKVFIVLIDHGI 3193
            D+V +PR     +    +  GCQV+  ++ VLW   G+VD       M+K+   L    +
Sbjct: 85   DIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE--GNVDLVTFGIGMRKMNFHLKYKSV 142

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYK-EDSSSSADDAQGLEYYKYG 3016
            +Y L  S+  I ++  +       KYL++ L  AP ++ K   +S    D   L ++K  
Sbjct: 143  EYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEA 202

Query: 3015 SDTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMP 2836
            SD  W+RTTDFT +  IGQ SS+C++LPNG +    K  F  Y+  +    L        
Sbjct: 203  SDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFS 262

Query: 2835 TSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSA 2656
              R +           PY+IL+ +N LVQ G + WP L   F+ L++      +  +  A
Sbjct: 263  FCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEFVEHA 322

Query: 2655 LDEMY------YSSPSFNPEKILKKSIHARNTRRYADRNSYLDGGLVRIHRAQVTPTKIY 2494
            L++++      Y   +F  E+  K S H  N+   +     LD GLV + R Q+TP K++
Sbjct: 323  LEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVIS-----LDDGLVYVRRVQITPCKVF 377

Query: 2493 LCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSN-GDKLYTRLYQRV 2317
             C PEVNVSNRV+R FS+Y+D+FLRVSFVDE+  ++ + DL  +MS+  +   T +Y+R+
Sbjct: 378  FCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYRRI 437

Query: 2316 VSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKC 2137
            +SVLK GIVIG K F+FLA+S+SQLR++SLWMFAS  ++ A  IR WMGDF  I+N AK 
Sbjct: 438  LSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKY 497

Query: 2136 AARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC 1957
            AAR+GQSF SS + L V   E E + DI V  G  +YVFSDGIGKIS+  A EVA+ CG 
Sbjct: 498  AARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGF 557

Query: 1956 TYTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQ 1777
               PSAFQIRYGGYKGVVAVDP+ST KLSLR SM KF+S +T +DVL  +K++PCFLNRQ
Sbjct: 558  QAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQ 617

Query: 1776 IITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGY 1597
            +ITL+STLGV D+ FEK Q E V +LD +L +   A E L++M  GE+ +++ +ML+CGY
Sbjct: 618  LITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGY 677

Query: 1596 SPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQ 1417
             P+ EPYLSM+L  FRA+KLLEL+ K+RIF+P GR +MGCLDE+ TLEYG+VFVQ++  +
Sbjct: 678  QPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGR 737

Query: 1416 NSQFDGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQ 1237
            +           I R +  VI G V VAKNPCLHPGDV++L+ V+ P L+HMV+CVVFPQ
Sbjct: 738  HRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQ 797

Query: 1236 KGERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFF 1057
            KG RPHPNECSGSDLDGD+YF+CWD  LIP +   PM+Y   P   LD DVT  +IQE+F
Sbjct: 798  KGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYF 857

Query: 1056 ANYMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNP 877
             NYM+ND+LGII+  HT FAD E   ARS  CL+LAKLF++AVDFPKTGVPA +PS L  
Sbjct: 858  VNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYV 917

Query: 876  KEYPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYH 697
            KE+PDFMEK D+ +Y S +VIG L+RA+KD A     I SFTR+VA R YD D+E   + 
Sbjct: 918  KEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFE 977

Query: 696  NYIDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKA 517
            +Y++ AF  K+ YD  L +++ +YGIK EAE++SG+I   SK    R  + +AI + V++
Sbjct: 978  DYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSF-TRRRDAEAINLAVRS 1036

Query: 516  LRKELRSFFET--NVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPW 346
            LRKE R++F       +   D +  ASAWY++TYH  YWG Y +  ++D    H++SFPW
Sbjct: 1037 LRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRD----HYLSFPW 1092

Query: 345  IVHDKLLTIKRNKTK 301
             V+DKL+ IK N  +
Sbjct: 1093 CVYDKLMQIKENNLR 1107


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  923 bits (2385), Expect = 0.0
 Identities = 500/1030 (48%), Positives = 672/1030 (65%), Gaps = 10/1030 (0%)
 Frame = -1

Query: 3372 RDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGI 3193
            +D+V +PR     ++  ++Y GCQV+      LWS+   V       M+K+      +  
Sbjct: 85   QDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSAQD-VSVSFGIGMRKLHFSFSWYQK 143

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGS 3013
             Y L  S+ +I ++  +      +K+LV+ +  AP +F KED   +      +++Y  GS
Sbjct: 144  DYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGM-MDFYSDGS 202

Query: 3012 DTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSL--QMPFFPM 2839
            D  WIRTTDFT +  IGQ ++ C+ELP      D +  F NY   + +  L      +  
Sbjct: 203  DEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASTYLIESGSSYSS 262

Query: 2838 PTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPT---REKTVHC 2668
              ++LV           P++IL+ +N LVQ   L  P L  D + LL P    R    HC
Sbjct: 263  NANKLVPVVDPPPGFDLPFEILFKLNTLVQNACLPGPALDLDVYQLLNPKKIDRALIDHC 322

Query: 2667 ILSALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKI 2497
                L++++Y   S + P + L+K     +++     +    LD GLV ++R QVTP ++
Sbjct: 323  ----LEKLFYLGESCYEPARWLRKQYKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARV 378

Query: 2496 YLCRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRV 2317
            Y   PEVNVSNRV+R +S+Y+++FLRVSFVDED +++ + DL  + S   +  T+LY R+
Sbjct: 379  YFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRR--TKLYDRI 436

Query: 2316 VSVLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKC 2137
             SVL++GIVIG KKFEFLA+S+SQLRE+S WMFA  E +T+ +IR WMGDF  IRNVAK 
Sbjct: 437  YSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAKY 496

Query: 2136 AARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC 1957
            AAR+GQSFSSSR+TL V   E+E + D+ + S   RYVFSDGIGKISA  A  VA  CG 
Sbjct: 497  AARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGL 556

Query: 1956 T-YTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNR 1780
            T ++PSAFQIRYGGYKGVVAVDP S+ KLSLR SM KF+S++T +DVL+W+K++PC++NR
Sbjct: 557  TEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNR 616

Query: 1779 QIITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCG 1600
            Q+ITLLSTLGVED  FEK Q EVV RLD +L +   A E L +M  GE+ +++  ++ CG
Sbjct: 617  QLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCG 676

Query: 1599 YSPEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEP 1420
            Y P+ EP+LSM+L  FRA+KLLEL+ KTRIF+  GR +MGCLDE+ TLEYG+V VQ ++P
Sbjct: 677  YKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDP 736

Query: 1419 QNSQFDGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFP 1240
                              + +ITG V+VAKNPCLHPGDV++L+ V+ P L+HMV+CVVFP
Sbjct: 737  MRP-------------GRRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFP 783

Query: 1239 QKGERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEF 1060
            QKG RPHPNECSGSDLDGD+YF+CWD+ LIPP+   PM+Y   P   LDHDVT+ E++E+
Sbjct: 784  QKGLRPHPNECSGSDLDGDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEY 843

Query: 1059 FANYMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLN 880
            FANY++ND+LGII+  HT FAD EP  A S  C++LA+ F++AVDFPKTGV AE+P  L 
Sbjct: 844  FANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLY 903

Query: 879  PKEYPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAY 700
             KEYPDFMEK DK TY SK VIG L+R +K+ A    SI SFT +VA ++YDKD+E   +
Sbjct: 904  VKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGF 963

Query: 699  HNYIDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVK 520
              Y+D AF+ K  YD  L ++M +YGIK EAEI+SG I   SK    R  + ++I   V+
Sbjct: 964  EEYVDEAFHYKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKR-RDAESIGRAVR 1022

Query: 519  ALRKELRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWI 343
            ALRKE  S F    +    +E   ASAWYHITYH  YWG Y +   +D    HF+SF W 
Sbjct: 1023 ALRKETLSLFNATEE---ENESAKASAWYHITYHSSYWGLYNEGLNRD----HFLSFAWC 1075

Query: 342  VHDKLLTIKR 313
            V+DKL+ IK+
Sbjct: 1076 VYDKLVRIKK 1085


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
            gi|557094740|gb|ESQ35322.1| hypothetical protein
            EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  922 bits (2382), Expect = 0.0
 Identities = 500/1027 (48%), Positives = 664/1027 (64%), Gaps = 7/1027 (0%)
 Frame = -1

Query: 3372 RDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGI 3193
            +D+V +PR    +++  ++Y GCQV   +  VLWS+  +V       M+K+   +  +  
Sbjct: 84   QDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWSAQ-NVCVSFGTGMRKLHFSISWYEK 142

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGS 3013
             Y L   + +I R+  Y      +K+LV+ +  AP +F KED   +      L+++  GS
Sbjct: 143  DYRLELPYENIWRIDLYSPQGRASKFLVIQVIGAPKIFEKEDQPVNLLFGM-LDFFSDGS 201

Query: 3012 DTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSL--QMPFFPM 2839
            D  WIRTTDFT +  IGQ SS C+ELP      D +  F NY   +    L      +  
Sbjct: 202  DEQWIRTTDFTSSSCIGQSSSFCLELPRQLNVPDFRENFANYAEHEAGTFLIESGSSYSS 261

Query: 2838 PTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILS 2659
              + LV           P++IL+ VN LVQ   +  P L  DF+ LL P + +    I  
Sbjct: 262  DATNLVPVVDPPPGFDLPFEILFKVNALVQSACIPGPVLDLDFYQLLDPQKHERA-LIDH 320

Query: 2658 ALDEMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLC 2488
            +L++++Y     + P + L++      T+     +    LD GLV +HR QVTPT+IY  
Sbjct: 321  SLEKLFYLKECCYEPARWLREGYKEWTTKEKLPESPMISLDDGLVYMHRVQVTPTRIYFQ 380

Query: 2487 RPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSV 2308
             PEVNVSNRV+R +S Y+++FLR+SFVDED +++ + DL  + +   +  T+LY R+ SV
Sbjct: 381  GPEVNVSNRVLRHYSNYINNFLRISFVDEDLEKIRSMDLSPRSTTQRR--TKLYDRIYSV 438

Query: 2307 LKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAAR 2128
            L++GIVIG KKFEFLA+S+SQLRE+S WMFA  + ++AE IR WMGDF  IRNVAK AAR
Sbjct: 439  LRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDGLSAEIIRAWMGDFEHIRNVAKYAAR 498

Query: 2127 MGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-Y 1951
            +GQSFSSSR+TL V   E+E + D+ +     RYVFSDGIGKIS+  A  VA  CG T +
Sbjct: 499  LGQSFSSSRETLNVRTDEIEVIPDVEITYLGTRYVFSDGIGKISSEFARRVAKKCGLTEF 558

Query: 1950 TPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQII 1771
            TPSAFQIRYGGYKGVVAVD  S  KLSLR SM KF+SK+T +DVL+W+K++PC+LNRQ+I
Sbjct: 559  TPSAFQIRYGGYKGVVAVDRNSYKKLSLRKSMSKFESKNTKLDVLAWSKYQPCYLNRQLI 618

Query: 1770 TLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSP 1591
            TLLSTLGV+D  FEK Q EVV +LD +L +   A E L +M  GE+  ++ +++ CGY P
Sbjct: 619  TLLSTLGVKDYVFEKKQREVVDKLDAILTDPLEAHEALGLMAPGENTKILKELILCGYKP 678

Query: 1590 EHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNS 1411
            + EP+LSM+L  FRA+KLLEL+ K+RIF+  GR +MGCLDE+ TLEYG+V VQ + P   
Sbjct: 679  DAEPFLSMMLQNFRASKLLELRTKSRIFIHGGRSMMGCLDETRTLEYGQVVVQFSHPT-- 736

Query: 1410 QFDGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKG 1231
                        R   + ITG V+VAKNPCLHPGDV++LQ V    L HMV+CV+FPQKG
Sbjct: 737  ------------RPGCQYITGPVVVAKNPCLHPGDVRVLQAVYVSALSHMVDCVIFPQKG 784

Query: 1230 ERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFAN 1051
             RPHPNECSGSDLDGD+YF+CWD  LIPP+   PM+Y   P   LDHDVT+ EI+E+F N
Sbjct: 785  LRPHPNECSGSDLDGDIYFVCWDPELIPPETSEPMDYTPEPAQILDHDVTIEEIEEYFTN 844

Query: 1050 YMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKE 871
            Y++ND+LGII+  HT FAD EP  A S  C++LA+ F++AVDFPKTGV AE+P  L  KE
Sbjct: 845  YIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSIAVDFPKTGVAAEIPQHLYVKE 904

Query: 870  YPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNY 691
            YPDFMEK DK TY SK VIG L+R +K+ A    SI SFT +VA +TYD+D+E   +  Y
Sbjct: 905  YPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKTYDQDMEVYGFEEY 964

Query: 690  IDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALR 511
            ID AF  K  YD  L ++M +YGIK EAE++SG I   SK    R  + ++I   V++LR
Sbjct: 965  IDEAFYHKGNYDYKLGNLMDYYGIKTEAEVLSGGIMRMSKSFTKR-RDGESIGRAVRSLR 1023

Query: 510  KELRSFFETNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWIVHD 334
            KE  S+F    K    D    ASAWYH+TYHP YWG Y +   +D    HF+SF W V+D
Sbjct: 1024 KEALSWFNAAEKEEDFDVSAKASAWYHVTYHPSYWGVYNEGLNRD----HFLSFAWCVYD 1079

Query: 333  KLLTIKR 313
            KL+ IK+
Sbjct: 1080 KLVRIKK 1086


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  922 bits (2382), Expect = 0.0
 Identities = 498/1032 (48%), Positives = 675/1032 (65%), Gaps = 11/1032 (1%)
 Frame = -1

Query: 3369 DLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIK 3190
            D++ +PR     +    ++ G Q+++  +CVLW +  +V  +    ++K +  L     +
Sbjct: 84   DIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAI-NVSVKFGFGLRKFYFFLSHGSEE 142

Query: 3189 YMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSD 3010
            Y L  S  +I ++         TK+L++ L  AP ++ K        D   L Y+K   D
Sbjct: 143  YKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEK--------DVSALSYFKETPD 194

Query: 3009 TNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFPMPTS 2830
              W+R  DFT +  IGQ S++C+ELP+G++  +    F  YK       L+         
Sbjct: 195  DQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNL 254

Query: 2829 RLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALD 2650
             LV           P++IL+ +N LVQ G LS PTL  +FF  + P R   +  I  AL+
Sbjct: 255  HLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRIN-ISFIEHALE 313

Query: 2649 EMYYSSPS-FNPEKILKKSIHARNTRRYADRNSY-LDGGLVRIHRAQVTPTKIYLCRPEV 2476
            ++YY     + P + L +      +++ A   +  LD GLV + R Q+TP K+Y C PEV
Sbjct: 314  KLYYLEECCYEPVRWLHEQYRTYISKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEV 373

Query: 2475 NVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEG 2296
            NVSNRV+R +   +D+FLRVSF+DE+ +++H+  +  +MSN  +  T +Y+R++S+L+ G
Sbjct: 374  NVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSNEGRR-TGVYRRILSILQNG 432

Query: 2295 IVIGRKKFEFLAYSNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQS 2116
            IVIG KKF+FLA S+SQLR++S WMFAS   +TA +IR+ MGDF  IRNVAK AAR+GQS
Sbjct: 433  IVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQS 492

Query: 2115 FSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC-TYTPSA 1939
            FSSS++TL+V   E+E + DI        YVFSDGIGKISA LA  VA  CGC   TPSA
Sbjct: 493  FSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSA 552

Query: 1938 FQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLS 1759
            FQIRYGGYKGVVAVDP S+ KLSLR SM K++S++T +DVLSW+K+RPCFLNRQ+ITLLS
Sbjct: 553  FQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLS 612

Query: 1758 TLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEP 1579
            TLGV+D  FEK Q E V +LD +L +   A E L++M  GE+ +++ +ML CGY P+ EP
Sbjct: 613  TLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEP 672

Query: 1578 YLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDG 1399
            +LSM+L  FRAAKLLEL+ KTRIFVP GR +MGCLDE+ TLEYGEVFVQ++     Q  G
Sbjct: 673  FLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFG 732

Query: 1398 RDPSQTILRSNKK----VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKG 1231
               S     S       ++ G+V+VAKNPCLHPGDV+IL  VD P LHHMV+CVVFPQKG
Sbjct: 733  --DSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKG 790

Query: 1230 ERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFAN 1051
             RPHP+ECSGSDLDGD+YF+CWD  LIPP+  +PM+Y   P   LDHDV + E++E+F N
Sbjct: 791  MRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTN 850

Query: 1050 YMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKE 871
            Y+ ND LGII+  HTVFAD E + A    C +LAKLF++A++FPKTGVPAE+P  L+ KE
Sbjct: 851  YIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKE 910

Query: 870  YPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNY 691
            YPDFMEK +K TY S+ VIG L+R +KD A  ++ + SFTR+VA ++YD D+E   + +Y
Sbjct: 911  YPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDY 970

Query: 690  IDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALR 511
            +  AF  K+ YD  L S+M   GI+ E+EI+SG+I   SK    R  + +AI + V++LR
Sbjct: 971  VRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKR-KDAEAIALAVRSLR 1029

Query: 510  KELRSFFE---TNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPWI 343
            KE R++F    +   A   D Y +ASAWYH+TYHP YWG Y +    D    HF+SFPW 
Sbjct: 1030 KEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHD----HFLSFPWC 1085

Query: 342  VHDKLLTIKRNK 307
            V+DKL+ IKR+K
Sbjct: 1086 VYDKLIQIKRDK 1097


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
            arietinum]
          Length = 1126

 Score =  921 bits (2380), Expect = 0.0
 Identities = 507/1035 (48%), Positives = 668/1035 (64%), Gaps = 11/1035 (1%)
 Frame = -1

Query: 3372 RDLVKRPRRGPVEVATTRVYLGCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGI 3193
            RD+V  PR     +    +Y GCQ++   + +LW     V  +L A M+K    +     
Sbjct: 89   RDIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRD-VSVDLSAGMRKWRFCMCHDNK 147

Query: 3192 KYMLVSSFGSIQRMHHYGSASPGTKYLVMPLYCAPSVF--YKEDSSSSADDAQGLE-YYK 3022
            K+    S+ +I ++  Y       KYL++ L  AP +F  Y   S+S+      L+ Y+K
Sbjct: 148  KFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFK 207

Query: 3021 YGSDTNWIRTTDFTGNFGIGQCSSICVELPNGAKDKDIKGTFYNYKVIKGNLSLQMPFFP 2842
               D  WIR  DFT    IGQ S+IC+ELP      +I+  F +Y+  +G  +L+     
Sbjct: 208  ESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESGSPF 267

Query: 2841 MPTSRLVXXXXXXXXXXXPYQILYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCIL 2662
                 +V           P+ IL+ VN LVQ G LS   L   F+ L+ P R   V  I 
Sbjct: 268  SHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRIN-VDFIE 326

Query: 2661 SALDEMYYSSP-SFNPEKILKKSIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYL 2491
             AL++MYYS    + P + LK          Y  ++    LD GLV + R Q+TP K+Y 
Sbjct: 327  HALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQITPCKVYF 386

Query: 2490 CRPEVNVSNRVIRQFSRYMDDFLRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVS 2311
            C PE+NVSNRV+R F  ++D+FLRVSFVDE+  +L++ DL  ++S G +  T +Y R++S
Sbjct: 387  CGPEINVSNRVVRHFHEHIDNFLRVSFVDEELDKLYSTDLSSRISVGVR--TEVYNRILS 444

Query: 2310 VLKEGIVIGRKKFEFLAYSNSQLRESSLWMFASNEN-VTAENIRNWMGDFMSIRNVAKCA 2134
            +L+ GIVIG KKFEFLA+S+SQLRE+SLWMFA     +TA+ IR WMGDF  IRNVAK A
Sbjct: 445  ILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDFSQIRNVAKYA 504

Query: 2133 ARMGQSFSSSRKTLRVLDTEVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT 1954
            AR+GQSF SS +TL V   E+E + D  V      YVFSDGIGKIS   A  VA  CG  
Sbjct: 505  ARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGKISLEFARRVAKKCGYD 564

Query: 1953 YTPSAFQIRYGGYKGVVAVDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQI 1774
             TPSAFQIRYGGYKGVVAVDP S+ KLSLR SM K+DS +T +DVL+ +K++PC+LNRQ+
Sbjct: 565  STPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMYKYDSDNTKLDVLACSKYQPCYLNRQL 624

Query: 1773 ITLLSTLGVEDQAFEKLQEEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYS 1594
            ITLLSTL VED  FEK Q+E V++L+ +L N   A EVL +M  GE  +++ +ML CGY 
Sbjct: 625  ITLLSTLKVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMSTGEITNILKEMLFCGYK 684

Query: 1593 PEHEPYLSMILHAFRAAKLLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQN 1414
            P  EP+LSM+L  FRA+KLLEL+ KTRIF+P+GR +MG LDE+ TLEYGEVFVQ +    
Sbjct: 685  PNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYS---- 740

Query: 1413 SQFDGRDPSQTILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQK 1234
               + R  S +   +N  V+TG+V+VAKNPCLHPGDV++L+ VD P LHHMV+CVVFPQK
Sbjct: 741  ---NNRISSLSYGSANSLVVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQK 797

Query: 1233 GERPHPNECSGSDLDGDLYFICWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFA 1054
            G RPHPNECSGSDLDGD+YF+CWD  LIPP+   PM Y +   + L HDV + E++E+F 
Sbjct: 798  GHRPHPNECSGSDLDGDIYFVCWDPELIPPETTEPMEYASVQPIVLYHDVEIEEVEEYFT 857

Query: 1053 NYMLNDALGIISARHTVFADSEPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPK 874
            NY+LND+LGII+  H VFAD EP  A+++ C++LAKLF++AVDFPKTG+PA +P  L  K
Sbjct: 858  NYILNDSLGIIANAHIVFADKEPAKAKAEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAK 917

Query: 873  EYPDFMEKEDKHTYMSKRVIGNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHN 694
            EYPDFMEK DK TY S  VIG L+R I+    +  SI+SFT EVA ++YD D+E   + +
Sbjct: 918  EYPDFMEKPDKTTYKSNNVIGKLFREIQGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMD 977

Query: 693  YIDAAFNCKNYYDSSLASIMHHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKAL 514
            Y+D AF  K  YD  L ++M +YGIK E+EI+SGNI   SK    R  + DAI M V++L
Sbjct: 978  YVDDAFYHKTNYDYKLGNLMDYYGIKNESEILSGNIMRMSKSFNKR-RDGDAINMAVRSL 1036

Query: 513  RKELRSFFE---TNVKALVADEYEMASAWYHITYHPQYWG-YGDYTEKDRSKPHFISFPW 346
            RKE RS+F    T V +   D Y  ASAWY++TYH  YWG Y +  ++D    HF+SFPW
Sbjct: 1037 RKEARSWFNDDATGVDSGSVDAYAKASAWYYVTYHHSYWGSYNEGMKRD----HFLSFPW 1092

Query: 345  IVHDKLLTIKRNKTK 301
             V+  L+ IK+ K +
Sbjct: 1093 CVYHLLVQIKKEKAR 1107


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  920 bits (2378), Expect = 0.0
 Identities = 480/977 (49%), Positives = 667/977 (68%), Gaps = 8/977 (0%)
 Frame = -1

Query: 3309 GCQVNHNEYCVLWSSTGHVDFELCANMKKVFIVLIDHGIKYMLVSSFGSIQRMHHYGSAS 3130
            GCQ++ +++ VL S+   + F +   +KK++  L      Y L  S+ +I ++  +    
Sbjct: 102  GCQISDDKFAVLGSTEVSIKFGI--GLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYG 159

Query: 3129 PGTKYLVMPLYCAPSVFYKEDSSSSADDAQGLEYYKYGSDTNWIRTTDFTGNFGIGQCSS 2950
               ++L++ L+ AP ++ + ++S  +       ++K   D  W+RTTDF  ++ IG  SS
Sbjct: 160  QNAQFLLIQLFGAPRIYKRLENSCYS-------FFKETPDDQWVRTTDFAPSW-IGLSSS 211

Query: 2949 ICVELPNGAKDKDIKGTFYNYKVIKGNLSLQ--MPFFPMPTSRLVXXXXXXXXXXXPYQI 2776
            +C++   G    + + +F++Y   + N++LQ    FF    S LV           PY+I
Sbjct: 212  LCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKI 271

Query: 2775 LYHVNLLVQEGVLSWPTLKRDFFSLLQPTREKTVHCILSALDEMYYSSPS-FNPEKILKK 2599
            L+ ++ LVQ G +  P+L   FF L+ P R + V CI  AL+++YY     ++P + L +
Sbjct: 272  LFKISSLVQHGCIPGPSLNVYFFRLVDPQR-RNVACIEQALEKLYYLKECCYDPVRWLTE 330

Query: 2598 SIHARNTRRYADRNSY--LDGGLVRIHRAQVTPTKIYLCRPEVNVSNRVIRQFSRYMDDF 2425
                    R   ++    LD GLV + R  VTP K+Y C PEVNVSNRV+R +S  +D+F
Sbjct: 331  QYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 390

Query: 2424 LRVSFVDEDGKQLHAYDLCRKMSNGDKLYTRLYQRVVSVLKEGIVIGRKKFEFLAYSNSQ 2245
            LRVSFVDE+ ++L++ +L  K S G+ + T +Y+R++S +++G VIG KKFEFLA+S+SQ
Sbjct: 391  LRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQ 450

Query: 2244 LRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDTEVED 2065
            LR++S+WMFAS   +TA +IR WMGDF  I+NVAK AAR+GQSF SS++TL VL  E+E 
Sbjct: 451  LRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEV 510

Query: 2064 LNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAVDPFS 1885
            + D+ V   +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAVDP+S
Sbjct: 511  IPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAVDPYS 568

Query: 1884 TYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQEEVVS 1705
            + KLSLR SM K++S +  +DVL W+K++PC+LNRQ+ITLLSTLGV+D   E+ Q+E V 
Sbjct: 569  SMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVD 628

Query: 1704 RLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKLLELK 1525
            +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KLL+L+
Sbjct: 629  QLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLR 688

Query: 1524 VKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGRDPSQTILRSN-KKVIT 1351
             K+RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N   ++ 
Sbjct: 689  TKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILK 748

Query: 1350 GRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFI 1171
            G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD+YF+
Sbjct: 749  GNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 808

Query: 1170 CWDESLIPPQVESPMNYFAPPEMALDHDVTVAEIQEFFANYMLNDALGIISARHTVFADS 991
            CWD+ +IPP+   PM Y   P + LDHDVT+ E++E+F NY++ND+LGIIS  H VFAD 
Sbjct: 809  CWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADR 868

Query: 990  EPEMARSKSCLDLAKLFTLAVDFPKTGVPAEVPSTLNPKEYPDFMEK-EDKHTYMSKRVI 814
            EP+MA S  C  LA+L ++AVDFPKTGVPAE+PS   PKEYPDFM+K  DK TY+S+RVI
Sbjct: 869  EPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVI 928

Query: 813  GNLYRAIKDYAMQSFSISSFTREVAHRTYDKDLEHGAYHNYIDAAFNCKNYYDSSLASIM 634
            G LYR +KD A Q+ S + FTR+VA R+YD DLE   + +YID AF+ K  YD+ L ++M
Sbjct: 929  GKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLM 988

Query: 633  HHYGIKYEAEIVSGNIFSWSKYHGLRLGNRDAILMDVKALRKELRSFFETNVKALVADEY 454
             +YGIK EAEI+SG I   SK    R  + +AI + V+ALRKE R++F+   +  + D  
Sbjct: 989  DYYGIKTEAEILSGGIMKTSKTFD-RRKDAEAISIAVRALRKEARTWFKR--RNDIDDML 1045

Query: 453  EMASAWYHITYHPQYWG 403
              ASAWYH+TYHP YWG
Sbjct: 1046 PKASAWYHVTYHPTYWG 1062