BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00005250
         (906 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   605   e-171
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   605   e-171
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   604   e-170
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 603   e-170
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   602   e-170
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   602   e-170
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   602   e-170
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   602   e-170
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   601   e-169
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   601   e-169
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   534   e-149
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             450   e-124
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   447   e-123
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   418   e-114
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   415   e-113
gb|AFM77886.1| replicase [Hosta virus X]                              399   e-109
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   399   e-109
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   397   e-108
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               389   e-106
gb|AAF67818.1|AF111193_1 replicase [Potato virus X]                   386   e-105

>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  605 bits (1561), Expect = e-171
 Identities = 292/301 (97%), Positives = 300/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGE 1220

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPA
Sbjct: 1221 GPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPA 1280

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 1281 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 1340

Query: 903  L 905
            L
Sbjct: 1341 L 1341


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  605 bits (1561), Expect = e-171
 Identities = 292/301 (97%), Positives = 299/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGE 1220

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPA
Sbjct: 1221 GPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPA 1280

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 1281 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 1340

Query: 903  L 905
            L
Sbjct: 1341 L 1341


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  604 bits (1558), Expect = e-170
 Identities = 291/301 (96%), Positives = 300/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+I
Sbjct: 1046 SEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEI 1105

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1106 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 1165

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE
Sbjct: 1166 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 1225

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA
Sbjct: 1226 GPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 1285

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAK
Sbjct: 1286 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAK 1345

Query: 903  L 905
            L
Sbjct: 1346 L 1346


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  603 bits (1555), Expect = e-170
 Identities = 291/301 (96%), Positives = 300/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1029 SEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1088

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP
Sbjct: 1089 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKP 1148

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            +YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE
Sbjct: 1149 AYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 1208

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPA
Sbjct: 1209 GPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPA 1268

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 1269 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 1328

Query: 903  L 905
            L
Sbjct: 1329 L 1329


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  602 bits (1553), Expect = e-170
 Identities = 290/301 (96%), Positives = 298/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGE 1220

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPA
Sbjct: 1221 GPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPA 1280

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 1281 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 1340

Query: 903  L 905
            L
Sbjct: 1341 L 1341


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  602 bits (1552), Expect = e-170
 Identities = 291/301 (96%), Positives = 298/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGE 1220

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPA
Sbjct: 1221 GPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPA 1280

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 1281 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 1340

Query: 903  L 905
            L
Sbjct: 1341 L 1341


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  602 bits (1552), Expect = e-170
 Identities = 291/301 (96%), Positives = 298/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGE 1220

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPA
Sbjct: 1221 GPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPA 1280

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 1281 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 1340

Query: 903  L 905
            L
Sbjct: 1341 L 1341


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  602 bits (1552), Expect = e-170
 Identities = 291/301 (96%), Positives = 298/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGE 1220

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPA
Sbjct: 1221 GPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPA 1280

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 1281 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 1340

Query: 903  L 905
            L
Sbjct: 1341 L 1341


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  601 bits (1550), Expect = e-169
 Identities = 289/301 (96%), Positives = 299/301 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 372  SEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 431

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+WDFSKP
Sbjct: 432  KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNHWDFSKP 491

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGE
Sbjct: 492  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGE 551

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAKPA
Sbjct: 552  GPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIALQAKPA 611

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAK
Sbjct: 612  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAK 671

Query: 903  L 905
            L
Sbjct: 672  L 672


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  601 bits (1550), Expect = e-169
 Identities = 290/301 (96%), Positives = 297/301 (98%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGE 1220

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPA
Sbjct: 1221 GPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPA 1280

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAK
Sbjct: 1281 YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAK 1340

Query: 903  L 905
            L
Sbjct: 1341 L 1341


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  534 bits (1376), Expect = e-149
 Identities = 257/301 (85%), Positives = 277/301 (92%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            S +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KI
Sbjct: 1022 SPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKI 1081

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP
Sbjct: 1082 KPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKP 1141

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
             YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGE
Sbjct: 1142 XYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGE 1201

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPA
Sbjct: 1202 GPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPA 1261

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            Y PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK
Sbjct: 1262 YAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAK 1321

Query: 903  L 905
            +
Sbjct: 1322 M 1322


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  450 bits (1158), Expect = e-124
 Identities = 221/301 (73%), Positives = 246/301 (81%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KI
Sbjct: 1048 SEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKI 1107

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            K GQTIASFQQHAVMLYGTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF   
Sbjct: 1108 KAGQTIASFQQHAVMLYGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPA 1167

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGE
Sbjct: 1168 SYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGE 1227

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP 
Sbjct: 1228 GPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPV 1287

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  
Sbjct: 1288 YAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVG 1345

Query: 903  L 905
            L
Sbjct: 1346 L 1346


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  447 bits (1149), Expect = e-123
 Identities = 220/301 (73%), Positives = 245/301 (81%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KI
Sbjct: 1048 SEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKI 1107

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            K GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF   
Sbjct: 1108 KAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPA 1167

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            SYANDFTAFDQSQD AMLQFEILKAK+FN+P  +I+GYLDIKL+ KIFLG L IMRLTGE
Sbjct: 1168 SYANDFTAFDQSQDAAMLQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGE 1227

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP 
Sbjct: 1228 GPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPV 1287

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  
Sbjct: 1288 YAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVG 1345

Query: 903  L 905
            L
Sbjct: 1346 L 1346


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  418 bits (1075), Expect = e-114
 Identities = 212/305 (69%), Positives = 236/305 (77%), Gaps = 5/305 (1%)
 Frame = +3

Query: 6    EDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 185
            E+LW   A E+Q+TYL KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIK
Sbjct: 1116 EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIK 1175

Query: 186  PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 365
            PGQTIASFQQ AVMLYGTMARYMRR RD   P +IMINCE+TP DLS W LNYW+F KPS
Sbjct: 1176 PGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPS 1235

Query: 366  YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEG 545
            YANDFTAFDQSQDGAMLQFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSIMRLTGE 
Sbjct: 1236 YANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEY 1295

Query: 546  PTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ----- 710
             TFDANTECNIAYTHTRF+IPEG AQ     D A+   C EKPSF L+++ ++L+     
Sbjct: 1296 QTFDANTECNIAYTHTRFDIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGD 1350

Query: 711  AKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYS 890
             KP    Q  G+WAEFCGYLITPKGLIKDPLKL AS  LAK + K      + N + NY+
Sbjct: 1351 CKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYA 1406

Query: 891  LDAKL 905
             D KL
Sbjct: 1407 RDMKL 1411


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  415 bits (1067), Expect = e-113
 Identities = 201/300 (67%), Positives = 238/300 (79%)
 Frame = +3

Query: 6    EDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 185
            EDLW  CA+EVQ TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIK
Sbjct: 1370 EDLWVACAQEVQGTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIK 1429

Query: 186  PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 365
            PGQTIASFQQ AVMLYGTMARYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +
Sbjct: 1430 PGQTIASFQQSAVMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYA 1489

Query: 366  YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEG 545
            YANDFT FDQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEG
Sbjct: 1490 YANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEG 1549

Query: 546  PTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAY 725
            PTFDANTECNIAYTH RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA 
Sbjct: 1550 PTFDANTECNIAYTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPAL 1609

Query: 726  TPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKL 905
              Q+RG WAEFCGYLITP G++KDP KL A++ LA+ Q K      +     +++LD KL
Sbjct: 1610 FAQKRGFWAEFCGYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKL 1663


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  399 bits (1025), Expect = e-109
 Identities = 197/299 (65%), Positives = 231/299 (77%)
 Frame = +3

Query: 9    DLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKP 188
            DLW  CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKP
Sbjct: 1123 DLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKP 1182

Query: 189  GQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSY 368
            GQTIASF Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +Y
Sbjct: 1183 GQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAY 1242

Query: 369  ANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGP 548
            ANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGP
Sbjct: 1243 ANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGP 1302

Query: 549  TFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYT 728
            TFDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   
Sbjct: 1303 TFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVF 1362

Query: 729  PQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKL 905
            PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL
Sbjct: 1363 PQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKL 1417


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  399 bits (1025), Expect = e-109
 Identities = 197/299 (65%), Positives = 231/299 (77%)
 Frame = +3

Query: 9    DLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKP 188
            DLW  CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKP
Sbjct: 1157 DLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKP 1216

Query: 189  GQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSY 368
            GQTIASF Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +Y
Sbjct: 1217 GQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAY 1276

Query: 369  ANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGP 548
            ANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGP
Sbjct: 1277 ANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGP 1336

Query: 549  TFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYT 728
            TFDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   
Sbjct: 1337 TFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVF 1396

Query: 729  PQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKL 905
            PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL
Sbjct: 1397 PQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKL 1451


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  397 bits (1021), Expect = e-108
 Identities = 187/296 (63%), Positives = 230/296 (77%), Gaps = 2/296 (0%)
 Frame = +3

Query: 6    EDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 185
            + LW  CAEEVQ TYL K +  +K GE RQSPDFH++ I +FLKSQWVKKMEKLGA KIK
Sbjct: 1169 QTLWDTCAEEVQKTYLSKPMHMLKNGELRQSPDFHKNTIALFLKSQWVKKMEKLGADKIK 1228

Query: 186  PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 365
            PGQTIASFQQ AVMLYGTMARYMRR R+   P ++ INCE++P+ +S W+ N W+F   +
Sbjct: 1229 PGQTIASFQQAAVMLYGTMARYMRRMREVFQPTHVFINCEQSPEGMSDWIKNEWNFKGNA 1288

Query: 366  YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEG 545
            YANDFT FDQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK +  +F GTL IMRLTGEG
Sbjct: 1289 YANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAHVFTGTLGIMRLTGEG 1348

Query: 546  PTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAY 725
            PTFDANTECNIAYTH RF +P+GTAQ YAGDD  +A +  E+ SF + KN++ L AKP Y
Sbjct: 1349 PTFDANTECNIAYTHLRFNVPKGTAQAYAGDDSVLACIPEERESFKMWKNKLELTAKPEY 1408

Query: 726  TPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAK--AQKKAGVKDAISNVIANY 887
             PQ +G+WA+FCG+L TP G +K+PLK+ A +ELAK   + K  ++    +V+ NY
Sbjct: 1409 FPQMQGEWAQFCGFLFTPLGALKEPLKMLAVVELAKQRGELKKNMRSYALDVLLNY 1464


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  389 bits (1000), Expect = e-106
 Identities = 189/301 (62%), Positives = 232/301 (77%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            S +LW  CAEEVQ TYL K ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KI
Sbjct: 1337 SHELWHACAEEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKI 1396

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQ  VMLYGTMARYMRR R A  P NI +NCE+TPQ L+ ++ + W F +P
Sbjct: 1397 KPGQTIASFQQATVMLYGTMARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQP 1456

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            +YANDFT FDQSQDGAMLQFE+LKAK+ N+PE +I+GY+DIK + K+F G L+IMRLTGE
Sbjct: 1457 AYANDFTQFDQSQDGAMLQFEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGE 1516

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIA+ HTRF I + TAQ+YAGDD A +++  EK SF  +  ++AL +KP 
Sbjct: 1517 GPTFDANTECNIAFNHTRFHISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPL 1576

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
            +  Q++G+WAEFCGY ITP GLIK+P KL A+L LA  Q K  +KD ++    +YS D  
Sbjct: 1577 FYKQKKGEWAEFCGYSITPLGLIKEPKKLQANLTLAIKQNK--IKDTVN----SYSQDVA 1630

Query: 903  L 905
            L
Sbjct: 1631 L 1631


>gb|AAF67818.1|AF111193_1 replicase [Potato virus X]
          Length = 1456

 Score =  386 bits (992), Expect = e-105
 Identities = 183/300 (61%), Positives = 232/300 (77%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            S+++W  CA EVQ+ YL KS   +  G  RQSPDF E++I++FLKSQWV K+EKLG  KI
Sbjct: 1118 SQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKI 1177

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIA+F Q  VML+GTMARYMR FR A  P  + INCE TP+D+S W LN W+F +P
Sbjct: 1178 KPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFGRP 1237

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGE 542
            S AND+TAFDQSQDGAMLQFE+LKAK+  +PE +I+ Y+DIK + +IFLGTLSIMRLTGE
Sbjct: 1238 SLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGE 1297

Query: 543  GPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPA 722
            GPTFDANTECNIAYTHT+F+IP GTAQ+YAGDD A+  V   KPSF  L++++ L++KP 
Sbjct: 1298 GPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKPSFHRLEDKLLLKSKPV 1357

Query: 723  YTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAK 902
             T Q++G W EFCG+LITPKG++KDP+KLH SL+LA+A+ +         +  +Y+ D K
Sbjct: 1358 ITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKCQDSYEIDLSYAYDHK 1417