BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00005249
         (459 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   311   6e-83
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   311   6e-83
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   310   1e-82
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   309   2e-82
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 308   4e-82
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   308   5e-82
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   308   5e-82
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   308   6e-82
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   308   6e-82
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   308   6e-82
gb|ACB59265.1| replicase [Tulip virus X]                              273   1e-71
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   271   5e-71
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             252   3e-65
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   249   2e-64
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   246   3e-63
gb|AEP95743.1| RNA-dependent RNA polymerase [Cassava common mosa...   246   3e-63
emb|CAD79453.1| putative RNA-directed RNA polymerase [Hydrangea ...   241   6e-62
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   233   2e-59
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               227   1e-57
emb|CAB91087.1| RNA dependent RNA polymerase (RdRP) [Hydrangea r...   226   2e-57

>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  311 bits (797), Expect = 6e-83
 Identities = 149/152 (98%), Positives = 150/152 (98%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  311 bits (797), Expect = 6e-83
 Identities = 149/152 (98%), Positives = 150/152 (98%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  310 bits (795), Expect = 1e-82
 Identities = 148/152 (97%), Positives = 151/152 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  309 bits (792), Expect = 2e-82
 Identities = 147/152 (96%), Positives = 151/152 (99%)
 Frame = +3

Query: 3   SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
           SEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 372 SEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 431

Query: 183 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
           KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+WDFSKP
Sbjct: 432 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNHWDFSKP 491

Query: 363 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
           SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 492 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 523


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  308 bits (790), Expect = 4e-82
 Identities = 146/152 (96%), Positives = 152/152 (100%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1029 SEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1088

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP
Sbjct: 1089 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKP 1148

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            +YANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1149 AYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1180


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  308 bits (789), Expect = 5e-82
 Identities = 146/152 (96%), Positives = 151/152 (99%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+I
Sbjct: 1046 SEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEI 1105

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP
Sbjct: 1106 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 1165

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1166 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1197


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  308 bits (789), Expect = 5e-82
 Identities = 147/152 (96%), Positives = 149/152 (98%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  308 bits (788), Expect = 6e-82
 Identities = 148/152 (97%), Positives = 149/152 (98%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  308 bits (788), Expect = 6e-82
 Identities = 148/152 (97%), Positives = 149/152 (98%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  308 bits (788), Expect = 6e-82
 Identities = 148/152 (97%), Positives = 149/152 (98%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI
Sbjct: 1041 SEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 1100

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKP
Sbjct: 1101 KPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKP 1160

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE
Sbjct: 1161 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1192


>gb|ACB59265.1| replicase [Tulip virus X]
          Length = 235

 Score =  273 bits (699), Expect = 1e-71
 Identities = 131/152 (86%), Positives = 140/152 (92%)
 Frame = +3

Query: 3   SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
           S +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KI
Sbjct: 53  SPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKI 112

Query: 183 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
           KPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP
Sbjct: 113 KPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKP 172

Query: 363 SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
           SYANDFTAFDQSQDGAMLQFEILKAK+FNLPE
Sbjct: 173 SYANDFTAFDQSQDGAMLQFEILKAKFFNLPE 204


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  271 bits (694), Expect = 5e-71
 Identities = 130/152 (85%), Positives = 139/152 (91%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            S +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KI
Sbjct: 1022 SPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKI 1081

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP
Sbjct: 1082 KPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKP 1141

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
             YANDFTAFDQSQDGAMLQFEILKAK+FNLPE
Sbjct: 1142 XYANDFTAFDQSQDGAMLQFEILKAKFFNLPE 1173


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  252 bits (644), Expect = 3e-65
 Identities = 120/152 (78%), Positives = 132/152 (86%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KI
Sbjct: 1048 SEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKI 1107

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            K GQTIASFQQHAVMLYGTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF   
Sbjct: 1108 KAGQTIASFQQHAVMLYGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPA 1167

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE
Sbjct: 1168 SYANDFTAFDQSQDGAMLQFEILKAKHFNIPE 1199


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  249 bits (637), Expect = 2e-64
 Identities = 119/151 (78%), Positives = 131/151 (86%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            SEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KI
Sbjct: 1048 SEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKI 1107

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            K GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF   
Sbjct: 1108 KAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPA 1167

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLP 455
            SYANDFTAFDQSQD AMLQFEILKAK+FN+P
Sbjct: 1168 SYANDFTAFDQSQDAAMLQFEILKAKHFNIP 1198


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  246 bits (627), Expect = 3e-63
 Identities = 118/151 (78%), Positives = 127/151 (84%)
 Frame = +3

Query: 6    EDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 185
            E+LW   A E+Q+TYL KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIK
Sbjct: 1116 EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIK 1175

Query: 186  PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 365
            PGQTIASFQQ AVMLYGTMARYMRR RD   P +IMINCE+TP DLS W LNYW+F KPS
Sbjct: 1176 PGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPS 1235

Query: 366  YANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            YANDFTAFDQSQDGAMLQFEILKAK+ N+PE
Sbjct: 1236 YANDFTAFDQSQDGAMLQFEILKAKHHNIPE 1266


>gb|AEP95743.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
          Length = 245

 Score =  246 bits (627), Expect = 3e-63
 Identities = 118/151 (78%), Positives = 127/151 (84%)
 Frame = +3

Query: 6   EDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 185
           E+LW   A E+Q+TYL KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIK
Sbjct: 58  EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIK 117

Query: 186 PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 365
           PGQTIASFQQ AVMLYGTMARYMRR RD   P +IMINCE+TP DLS W LNYW+F KPS
Sbjct: 118 PGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPS 177

Query: 366 YANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
           YANDFTAFDQSQDGAMLQFEILKAK+ N+PE
Sbjct: 178 YANDFTAFDQSQDGAMLQFEILKAKHHNIPE 208


>emb|CAD79453.1| putative RNA-directed RNA polymerase [Hydrangea ringspot virus]
          Length = 219

 Score =  241 bits (616), Expect = 6e-62
 Identities = 117/144 (81%), Positives = 125/144 (86%)
 Frame = +3

Query: 3   SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
           SEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KI
Sbjct: 58  SEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKI 117

Query: 183 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
           K GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I INCE TPQDLSR+V NYWDF   
Sbjct: 118 KAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIKINCEATPQDLSRFVQNYWDFKPA 177

Query: 363 SYANDFTAFDQSQDGAMLQFEILK 434
           SYANDFTAFDQSQDGAMLQFEILK
Sbjct: 178 SYANDFTAFDQSQDGAMLQFEILK 201


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  233 bits (595), Expect = 2e-59
 Identities = 111/151 (73%), Positives = 124/151 (82%)
 Frame = +3

Query: 6    EDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIK 185
            EDLW  CA+EVQ TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIK
Sbjct: 1370 EDLWVACAQEVQGTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIK 1429

Query: 186  PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 365
            PGQTIASFQQ AVMLYGTMARYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +
Sbjct: 1430 PGQTIASFQQSAVMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYA 1489

Query: 366  YANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            YANDFT FDQSQDGAMLQFEILKAK+ ++PE
Sbjct: 1490 YANDFTQFDQSQDGAMLQFEILKAKHHSIPE 1520


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  227 bits (579), Expect = 1e-57
 Identities = 106/152 (69%), Positives = 123/152 (80%)
 Frame = +3

Query: 3    SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
            S +LW  CAEEVQ TYL K ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KI
Sbjct: 1337 SHELWHACAEEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKI 1396

Query: 183  KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
            KPGQTIASFQQ  VMLYGTMARYMRR R A  P NI +NCE+TPQ L+ ++ + W F +P
Sbjct: 1397 KPGQTIASFQQATVMLYGTMARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQP 1456

Query: 363  SYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 458
            +YANDFT FDQSQDGAMLQFE+LKAK+ N+PE
Sbjct: 1457 AYANDFTQFDQSQDGAMLQFEVLKAKHHNIPE 1488


>emb|CAB91087.1| RNA dependent RNA polymerase (RdRP) [Hydrangea ringspot virus]
          Length = 195

 Score =  226 bits (576), Expect = 2e-57
 Identities = 108/138 (78%), Positives = 118/138 (85%)
 Frame = +3

Query: 3   SEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKI 182
           SEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KI
Sbjct: 58  SEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKI 117

Query: 183 KPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKP 362
           K GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF   
Sbjct: 118 KAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPA 177

Query: 363 SYANDFTAFDQSQDGAML 416
           SYANDFTAFDQSQD AML
Sbjct: 178 SYANDFTAFDQSQDAAML 195