BLASTX nr result
ID: Ephedra28_contig00005020
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00005020
(386 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABR17840.1| unknown [Picea sitchensis] 91 2e-16
gb|ABR16646.1| unknown [Picea sitchensis] 91 2e-16
ref|WP_006785341.1| RNA polymerase sigma factor RpoD [Turicibact... 81 2e-13
ref|WP_021898221.1| rNA polymerase sigma factor [Faecalibacteriu... 78 1e-12
ref|WP_005942267.1| RNA polymerase sigma factor SigB [Gordonia h... 78 1e-12
ref|YP_007315441.1| RNA polymerase sigma factor, sigma-70 family... 78 1e-12
ref|WP_022084551.1| rNA polymerase sigma factor [Mycoplasma sp. ... 77 2e-12
ref|YP_004321454.1| RNA polymerase sigma factor RpoD [Aerococcus... 77 3e-12
ref|WP_008513677.1| RNA polymerase sigma factor RpoD [Dethiobact... 77 3e-12
ref|WP_022109123.1| rNA polymerase sigma factor [Clostridium sp.... 76 4e-12
ref|WP_010623549.1| RNA polymerase sigma factor RpoD [Lactobacil... 76 4e-12
ref|WP_003142143.1| RNA polymerase sigma factor RpoD [Aerococcus... 76 4e-12
ref|YP_003758416.1| RpoD subfamily RNA polymerase sigma-70 subun... 76 4e-12
ref|WP_021921323.1| rNA polymerase sigma factor [Acholeplasma sp... 76 5e-12
ref|YP_003691604.1| RNA polymerase, sigma 70 subunit, RpoD subfa... 76 5e-12
ref|WP_022434996.1| rNA polymerase sigma factor [Firmicutes bact... 75 1e-11
ref|WP_022434509.1| rNA polymerase sigma factor [Mycoplasma sp. ... 75 1e-11
ref|YP_181295.1| RNA polymerase sigma factor RpoD [Dehalococcoid... 75 1e-11
ref|YP_359316.1| RNA polymerase sigma factor RpoD [Carboxydother... 75 1e-11
ref|YP_307630.1| RNA polymerase, sigma factor [Dehalococcoides s... 75 1e-11
>gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 90.9 bits (224), Expect = 2e-16
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Frame = +1
Query: 1 SDITGFSKTRIKDVMSYRKTFVSLDSPAPGKD-EAYLASVVDDPDQLSVDTITSEELGQR 177
+++ G S TR++ V + SLD GKD + + +V D + S +TI S+EL ++
Sbjct: 366 AEVAGISMTRLRHVTRCSRVPTSLDR-CVGKDMDEKFSEIVADTNSESTETIVSKELFKK 424
Query: 178 DIDNVLRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENR 357
D+D VL TLT +E +L EVGE+FSLSRERVRQ+E AMRKLR+N
Sbjct: 425 DLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNH 484
Query: 358 DIRDLEHYL 384
+ L+HYL
Sbjct: 485 RTQHLKHYL 493
>gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 90.9 bits (224), Expect = 2e-16
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Frame = +1
Query: 1 SDITGFSKTRIKDVMSYRKTFVSLDSPAPGKD-EAYLASVVDDPDQLSVDTITSEELGQR 177
+++ G S TR++ V + SLD GKD + + +V D + S +TI S+EL ++
Sbjct: 463 AEVAGISMTRLRHVTRCSRVPTSLDR-CVGKDMDEKFSEIVADTNSESTETIVSKELFKK 521
Query: 178 DIDNVLRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENR 357
D+D VL TLT +E +L EVGE+FSLSRERVRQ+E AMRKLR+N
Sbjct: 522 DLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNH 581
Query: 358 DIRDLEHYL 384
+ L+HYL
Sbjct: 582 RTQHLKHYL 590
>ref|WP_006785341.1| RNA polymerase sigma factor RpoD [Turicibacter]
gi|292645033|gb|EFF63106.1| RNA polymerase sigma factor
RpoD [Turicibacter sanguinis PC909]
gi|325489319|gb|EGC91693.1| RNA polymerase sigma factor
RpoD [Turicibacter sp. HGF1]
Length = 456
Score = 80.9 bits (198), Expect = 2e-13
Identities = 41/128 (32%), Positives = 73/128 (57%)
Frame = +1
Query: 1 SDITGFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRD 180
S+ G + ++++++ + VSL+SP +D+++L + D D LS S E+ +++
Sbjct: 327 SEKMGIAPEKVREILKISQEPVSLESPVGEEDDSHLGDFIPDADALSPSEFASNEMLKKE 386
Query: 181 IDNVLRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRD 360
+D+VL TLT +E TL+EVG+ F ++RER+RQ+E A+RKLR
Sbjct: 387 LDDVLETLTDREERVLRLRFGLEDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSR 446
Query: 361 IRDLEHYL 384
R L+ ++
Sbjct: 447 SRRLKDFM 454
>ref|WP_021898221.1| rNA polymerase sigma factor [Faecalibacterium sp. CAG:1138]
gi|524022098|emb|CCY04091.1| rNA polymerase sigma factor
[Faecalibacterium sp. CAG:1138]
Length = 351
Score = 78.2 bits (191), Expect = 1e-12
Identities = 41/127 (32%), Positives = 72/127 (56%)
Frame = +1
Query: 1 SDITGFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRD 180
++ G S+ R++++ + VSL++P +++++L V+D LS +T +L +
Sbjct: 224 AEYLGCSEERVREIQKIAQDPVSLETPIGEEEDSHLGDFVEDRGALSPVEVTESQLLKEQ 283
Query: 181 IDNVLRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRD 360
+ VL TLTP+E TL+EVG+ F+++RER+RQ+E A+RKLR
Sbjct: 284 LVRVLNTLTPREEKVLRLRYGLDDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPNR 343
Query: 361 IRDLEHY 381
I+ L+ Y
Sbjct: 344 IKHLKDY 350
>ref|WP_005942267.1| RNA polymerase sigma factor SigB [Gordonia hirsuta]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor
SigB [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 322
Score = 78.2 bits (191), Expect = 1e-12
Identities = 45/124 (36%), Positives = 60/124 (48%)
Frame = +1
Query: 10 TGFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDN 189
TG +I D+M + + VSLD P +EA L ++D + +S +T+ L DI
Sbjct: 197 TGIPAAKIADLMDHSRDTVSLDMPVGNDEEAPLGDFIEDSEAVSAETVVISHLLHSDIRT 256
Query: 190 VLRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRD 369
VL TL +E TL ++G F LSRERVRQ+ER M KLRE
Sbjct: 257 VLATLDDRERQVITLRFGLEDGQPRTLDQIGRSFGLSRERVRQIEREVMGKLREGDRAEK 316
Query: 370 LEHY 381
L Y
Sbjct: 317 LRAY 320
>ref|YP_007315441.1| RNA polymerase sigma factor, sigma-70 family [Halobacteroides
halobius DSM 5150] gi|505139968|ref|WP_015327070.1| RNA
polymerase sigma factor, sigma-70 family
[Halobacteroides halobius] gi|433670533|gb|AGB41348.1|
RNA polymerase sigma factor, sigma-70 family
[Halobacteroides halobius DSM 5150]
Length = 278
Score = 77.8 bits (190), Expect = 1e-12
Identities = 38/122 (31%), Positives = 72/122 (59%)
Frame = +1
Query: 19 SKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLR 198
S ++K + + +SLD+P D+ YL V++DP+ L+ D + +E+ + ++++VL
Sbjct: 155 STEKVKKIQRLIQDPISLDTPVGEDDDCYLGDVIEDPNILTPDQLADDEMLREELNDVLD 214
Query: 199 TLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEH 378
TL+ +E TL+E+G+ + LSRER+RQ+E+ A+++LR + + L+
Sbjct: 215 TLSKREKRILQLRFGLLDGRPRTLREIGKDYDLSRERIRQIEKKALQRLRHPKRSKRLKG 274
Query: 379 YL 384
YL
Sbjct: 275 YL 276
>ref|WP_022084551.1| rNA polymerase sigma factor [Mycoplasma sp. CAG:611]
gi|524259445|emb|CDA23701.1| rNA polymerase sigma factor
[Mycoplasma sp. CAG:611]
Length = 366
Score = 77.0 bits (188), Expect = 2e-12
Identities = 41/122 (33%), Positives = 71/122 (58%)
Frame = +1
Query: 19 SKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLR 198
S+ ++++VM + VSL++P +D+++L V D +S + T+ EL + ++DNVL
Sbjct: 243 SEEKVREVMKISQEPVSLETPIGEEDDSHLGDFVPDERTMSPEEYTTSELLKEELDNVLL 302
Query: 199 TLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEH 378
TLT +E TL+EVG+ F ++RER+RQ+E A+RK+R + L+
Sbjct: 303 TLTEREEKVLKLRFGLEDGQCRTLEEVGQIFGVTRERIRQIEAKALRKMRHPSRSKKLKD 362
Query: 379 YL 384
+L
Sbjct: 363 FL 364
>ref|YP_004321454.1| RNA polymerase sigma factor RpoD [Aerococcus urinae
ACS-120-V-Col10a] gi|503435251|ref|WP_013669912.1| RNA
polymerase sigma factor RpoD [Aerococcus urinae]
gi|326651510|gb|AEA01693.1| RNA polymerase sigma factor
RpoD [Aerococcus urinae ACS-120-V-Col10a]
Length = 401
Score = 76.6 bits (187), Expect = 3e-12
Identities = 37/119 (31%), Positives = 70/119 (58%)
Frame = +1
Query: 28 RIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLRTLT 207
+++++M + VSL++P +D+++L ++D D + D T++EL + ++ VL TLT
Sbjct: 281 KVRNIMKISQEPVSLETPIGEEDDSHLGDFIEDNDAMQPDEYTNQELLKEQLNEVLDTLT 340
Query: 208 PKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEHYL 384
+E TL++VG+ F ++RER+RQ+E A+RKLR ++ L+ +L
Sbjct: 341 DREENVLRLRFGLEDGQTKTLEQVGQQFGVTRERIRQIEAKALRKLRHPSRLKQLKDFL 399
>ref|WP_008513677.1| RNA polymerase sigma factor RpoD [Dethiobacter alkaliphilus]
gi|225169937|gb|EEG78732.1| RNA polymerase, sigma 70
subunit, RpoD subfamily [Dethiobacter alkaliphilus AHT
1]
Length = 372
Score = 76.6 bits (187), Expect = 3e-12
Identities = 40/126 (31%), Positives = 71/126 (56%)
Frame = +1
Query: 7 ITGFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDID 186
+ S+ R+++++ + VSL++P +D+++L ++D D + + EL + +D
Sbjct: 246 VMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELLKEQLD 305
Query: 187 NVLRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIR 366
+VL TLTP+E TL+EVG+ F ++RER+RQ+E A+RKLR +
Sbjct: 306 DVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSK 365
Query: 367 DLEHYL 384
L+ YL
Sbjct: 366 RLKDYL 371
>ref|WP_022109123.1| rNA polymerase sigma factor [Clostridium sp. CAG:533]
gi|524292285|emb|CDA52949.1| rNA polymerase sigma factor
[Clostridium sp. CAG:533]
Length = 370
Score = 76.3 bits (186), Expect = 4e-12
Identities = 40/124 (32%), Positives = 71/124 (57%)
Frame = +1
Query: 13 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 192
G S ++++VM + VSL++P +++++L V D LS + T+ E+ + +I +V
Sbjct: 245 GISPDKVREVMKISQDPVSLETPIGEEEDSHLGDFVPDERSLSPEEYTTNEILKEEIKSV 304
Query: 193 LRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDL 372
L TL P+E TL+EVG+ F+++RER+RQ+E A+RKLR + L
Sbjct: 305 LSTLQPREQQVLELRFGLIDGTSYTLEEVGKRFNVTRERIRQIEAKALRKLRHPSRAKKL 364
Query: 373 EHYL 384
+ ++
Sbjct: 365 KDFM 368
>ref|WP_010623549.1| RNA polymerase sigma factor RpoD [Lactobacillus versmoldensis]
Length = 383
Score = 76.3 bits (186), Expect = 4e-12
Identities = 40/120 (33%), Positives = 69/120 (57%)
Frame = +1
Query: 25 TRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLRTL 204
T+++D++ + VSL++P +D+++L ++D D S + S EL + ++NVL TL
Sbjct: 263 TKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDSDATSPEDHASYELLKEQLENVLDTL 322
Query: 205 TPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEHYL 384
T +E TL+EVG+ F ++RER+RQ+E A+RKLR + L+ +L
Sbjct: 323 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 382
>ref|WP_003142143.1| RNA polymerase sigma factor RpoD [Aerococcus viridans]
gi|294974189|gb|EFG49937.1| RNA polymerase sigma factor
RpoD [Aerococcus viridans ATCC 11563]
Length = 374
Score = 76.3 bits (186), Expect = 4e-12
Identities = 39/119 (32%), Positives = 68/119 (57%)
Frame = +1
Query: 28 RIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLRTLT 207
+++D++ + VSL++P +D+++L ++D D S D TS EL + ++ VL TLT
Sbjct: 255 KVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPDDYTSAELLKEQLNEVLDTLT 314
Query: 208 PKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEHYL 384
+E TL++VG+ F ++RER+RQ+E A+RKLR + L+ +L
Sbjct: 315 DREENVLRLRFGLEDGQSKTLEQVGQQFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>ref|YP_003758416.1| RpoD subfamily RNA polymerase sigma-70 subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|502983263|ref|WP_013218239.1| RNA polymerase sigma70
[Dehalogenimonas lykanthroporepellens]
gi|299527627|gb|ADJ26095.1| RNA polymerase, sigma 70
subunit, RpoD subfamily [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 502
Score = 76.3 bits (186), Expect = 4e-12
Identities = 40/119 (33%), Positives = 68/119 (57%)
Frame = +1
Query: 28 RIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLRTLT 207
+++++ + VSL+SP +++++L ++D + L S +L + IDNVL +LT
Sbjct: 383 KVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALPPPDAASRQLLKEQIDNVLDSLT 442
Query: 208 PKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEHYL 384
P+E TL+EVG+ F+++RER+RQ+E A+RKLR R L+ YL
Sbjct: 443 PRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPTRSRKLKDYL 501
>ref|WP_021921323.1| rNA polymerase sigma factor [Acholeplasma sp. CAG:878]
gi|524046500|emb|CCY27810.1| rNA polymerase sigma factor
[Acholeplasma sp. CAG:878]
Length = 358
Score = 75.9 bits (185), Expect = 5e-12
Identities = 42/122 (34%), Positives = 69/122 (56%)
Frame = +1
Query: 19 SKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLR 198
S +I+++ + VSL++P +D+++L + D +S + T+ EL + +ID+VL
Sbjct: 235 SVEKIREIYKISQDPVSLETPIGEEDDSHLGDFIKDEHNMSPEDYTTNELLKDEIDDVLL 294
Query: 199 TLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEH 378
TLT +E TL+EVG+ F ++RER+RQ+E A+RKLR R L+
Sbjct: 295 TLTEREEKVIRLRFGLEDGKARTLEEVGQMFGVTRERIRQIEAKALRKLRHPSRSRKLKD 354
Query: 379 YL 384
YL
Sbjct: 355 YL 356
>ref|YP_003691604.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfurivibrio
alkaliphilus AHT2] gi|502929523|ref|WP_013164499.1| RNA
polymerase subunit sigma-70 [Desulfurivibrio
alkaliphilus] gi|296926175|gb|ADH86985.1| RNA
polymerase, sigma 70 subunit, RpoD subfamily
[Desulfurivibrio alkaliphilus AHT2]
Length = 555
Score = 75.9 bits (185), Expect = 5e-12
Identities = 38/112 (33%), Positives = 65/112 (58%)
Frame = +1
Query: 13 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 192
G ++K ++ K +SLD+P ++++L+ ++D D S D T + Q ++ V
Sbjct: 429 GVDIAKVKSILKIAKEPLSLDTPVGSGEDSFLSDFIEDADSTSPDEATIYDSLQDNLARV 488
Query: 193 LRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLR 348
L+TLTP+E TL+EVGE+FS++RER+RQ+E A++KL+
Sbjct: 489 LKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLK 540
>ref|WP_022434996.1| rNA polymerase sigma factor [Firmicutes bacterium CAG:321]
gi|524738108|emb|CDE38939.1| rNA polymerase sigma factor
[Firmicutes bacterium CAG:321]
Length = 365
Score = 74.7 bits (182), Expect = 1e-11
Identities = 41/124 (33%), Positives = 70/124 (56%)
Frame = +1
Query: 13 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 192
G S +I++V+ + VSL++P +++++L V D + +S + T E+ + +I +V
Sbjct: 240 GMSPEKIREVIKIAQDPVSLETPIGEEEDSHLGDFVPDENNMSPEDFTIHEMLKEEISDV 299
Query: 193 LRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDL 372
L TLT +E TL+EVG+ F ++RER+RQ+E A+RKLR R L
Sbjct: 300 LLTLTEREEQVLRLRFGLDDGSSKTLEEVGQMFGVTRERIRQIEAKALRKLRHPSRSRKL 359
Query: 373 EHYL 384
+ +L
Sbjct: 360 KDFL 363
>ref|WP_022434509.1| rNA polymerase sigma factor [Mycoplasma sp. CAG:472]
gi|524735953|emb|CDE38435.1| rNA polymerase sigma factor
[Mycoplasma sp. CAG:472]
Length = 370
Score = 74.7 bits (182), Expect = 1e-11
Identities = 38/122 (31%), Positives = 70/122 (57%)
Frame = +1
Query: 19 SKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLR 198
S ++++V+ + VSL++P +D+++L + D LS + T E+ + +ID+VL+
Sbjct: 247 SVDKVREVIKISQDPVSLETPIGEEDDSHLGDFIKDESSLSPEEYTENEILKEEIDDVLQ 306
Query: 199 TLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEH 378
+L P+E TL+EVG+ F+++RER+RQ+E A+RKLR + L
Sbjct: 307 SLQPREQEVLRLRFGLKDGTCHTLEEVGKKFNVTRERIRQIEAKALRKLRHPSRAKKLRD 366
Query: 379 YL 384
++
Sbjct: 367 FM 368
>ref|YP_181295.1| RNA polymerase sigma factor RpoD [Dehalococcoides ethenogenes 195]
gi|499238788|ref|WP_010936328.1| RNA polymerase sigma70
[Dehalococcoides mccartyi] gi|57225094|gb|AAW40151.1|
RNA polymerase sigma factor RpoD [Dehalococcoides
ethenogenes 195]
Length = 520
Score = 74.7 bits (182), Expect = 1e-11
Identities = 39/119 (32%), Positives = 68/119 (57%)
Frame = +1
Query: 28 RIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLRTLT 207
+++++ + VSL+SP +++++L ++D + L+ S +L + ID VL +LT
Sbjct: 401 KVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLT 460
Query: 208 PKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEHYL 384
P+E TL+EVG+ F+++RER+RQ+E A+RKLR R L+ YL
Sbjct: 461 PRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 519
>ref|YP_359316.1| RNA polymerase sigma factor RpoD [Carboxydothermus hydrogenoformans
Z-2901] gi|499662658|ref|WP_011343392.1| RNA polymerase
sigma factor RpoD [Carboxydothermus hydrogenoformans]
gi|77996139|gb|ABB15038.1| RNA polymerase sigma factor
RpoD [Carboxydothermus hydrogenoformans Z-2901]
Length = 370
Score = 74.7 bits (182), Expect = 1e-11
Identities = 40/124 (32%), Positives = 70/124 (56%)
Frame = +1
Query: 13 GFSKTRIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNV 192
G S+ +++++M + VSL++P +++++L V+DPD + S L + +D V
Sbjct: 246 GISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEV 305
Query: 193 LRTLTPKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDL 372
L+TLT +E TL+EVG+ F ++RER+RQ+E A+RKLR + L
Sbjct: 306 LKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKL 365
Query: 373 EHYL 384
+ +L
Sbjct: 366 KDFL 369
>ref|YP_307630.1| RNA polymerase, sigma factor [Dehalococcoides sp. CBDB1]
gi|147669171|ref|YP_001213989.1| RpoD family RNA
polymerase sigma factor [Dehalococcoides sp. BAV1]
gi|289432439|ref|YP_003462312.1| RpoD subfamily RNA
polymerase sigma-70 subunit [Dehalococcoides sp. GT]
gi|452203396|ref|YP_007483529.1| RNA polymerase sigma
factor RpoD [Dehalococcoides mccartyi DCMB5]
gi|452204832|ref|YP_007484961.1| RNA polymerase sigma
factor RpoD [Dehalococcoides mccartyi BTF08]
gi|499628333|ref|WP_011309067.1| RNA polymerase sigma70
[Dehalococcoides mccartyi] gi|73660107|emb|CAI82714.1|
RNA polymerase, sigma factor [Dehalococcoides sp. CBDB1]
gi|146270119|gb|ABQ17111.1| RNA polymerase, sigma 70
subunit, RpoD family [Dehalococcoides sp. BAV1]
gi|288946159|gb|ADC73856.1| RNA polymerase, sigma 70
subunit, RpoD subfamily [Dehalococcoides sp. GT]
gi|452110455|gb|AGG06187.1| RNA polymerase sigma factor
RpoD [Dehalococcoides mccartyi DCMB5]
gi|452111888|gb|AGG07619.1| RNA polymerase sigma factor
RpoD [Dehalococcoides mccartyi BTF08]
Length = 520
Score = 74.7 bits (182), Expect = 1e-11
Identities = 39/119 (32%), Positives = 68/119 (57%)
Frame = +1
Query: 28 RIKDVMSYRKTFVSLDSPAPGKDEAYLASVVDDPDQLSVDTITSEELGQRDIDNVLRTLT 207
+++++ + VSL+SP +++++L ++D + L+ S +L + ID VL +LT
Sbjct: 401 KVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLT 460
Query: 208 PKEXXXXXXXXXXXXXXXXTLQEVGEHFSLSRERVRQMERTAMRKLRENRDIRDLEHYL 384
P+E TL+EVG+ F+++RER+RQ+E A+RKLR R L+ YL
Sbjct: 461 PRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 519