BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00005005
         (2828 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty...   164   2e-37
emb|CAN60490.1| hypothetical protein VITISV_030841 [Vitis vinifera]   162   8e-37
emb|CAN74302.1| hypothetical protein VITISV_031363 [Vitis vinifera]   154   2e-34
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      151   2e-33
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      147   2e-32
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      147   3e-32
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      146   4e-32
gb|AAO73521.1| gag-pol polyprotein [Glycine max]                      146   4e-32
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      145   7e-32
emb|CAN65575.1| hypothetical protein VITISV_001033 [Vitis vinifera]   144   2e-31
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]             142   6e-31
gb|ABN08973.1| Peptidase aspartic, catalytic; Polynucleotidyl tr...   139   7e-30
gb|ABM55238.1| integrase [Beta vulgaris]                              139   7e-30
gb|ABH08430.1| putative integrase [Beta vulgaris]                     139   7e-30
emb|CAN76677.1| hypothetical protein VITISV_022012 [Vitis vinifera]   139   9e-30
gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japoni...   135   1e-28
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   134   2e-28
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   133   4e-28
emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]         131   1e-27
gb|ABF94836.1| retrotransposon protein, putative, unclassified [...   131   1e-27

>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
            aspartic, catalytic [Medicago truncatula]
          Length = 1715

 Score =  164 bits (415), Expect = 2e-37
 Identities = 120/383 (31%), Positives = 185/383 (48%), Gaps = 14/383 (3%)
 Frame = -1

Query: 1475 RSKQGESSFMTAQKYIKNTKKVWKEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRK 1296
            ++K   +S  T  K +K  K +  +K   +  +  L A      W LDSGC+ HMT  + 
Sbjct: 627  KNKAATASEKTIPKGVK-PKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRHMTGEKA 685

Query: 1295 LIKNITAYDGG-V*FGNNEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDN 1119
            L   +T  DGG V FG N+  K I  G   I     S   V LV  + +NLL I+  CDN
Sbjct: 686  LFLTLTMKDGGEVKFGGNQTGKIIGTG--TIGNSSISINNVWLVDGLKHNLLSISQFCDN 743

Query: 1118 GL*VRFQRNLCYIFDNAENSIT-AGKRMENLYILN-------EDTCLLRNTENTSI*HKI 963
            G  V F +  C + +  + SIT  GKR+EN+Y +N       +  CLL   +   + HK 
Sbjct: 744  GYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKR 803

Query: 962  LGQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLK-----KKNIQAMGS*TLY 798
            LG  ++  I  + K   V+ LP+  + + +     ++G ++K     K  +       L 
Sbjct: 804  LGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELL 863

Query: 797  ILNFVDQCKL*DLEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKF 618
             ++         L G+K+   +    +    ++ +K K Y            ++E   K 
Sbjct: 864  HIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKI 923

Query: 617  KCVRFD*GGEFLSLEFDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSE 438
              VR D GGEF +  F+ FC  HGI H+FS+ R PQ N ++ERKNRT+ E AR M +++ 
Sbjct: 924  LKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENN 983

Query: 437  IPKTFWVDAVHTTIYL*NRGLLR 369
            + K FW +AV+T+ Y+ NR  +R
Sbjct: 984  LAKHFWAEAVNTSCYIQNRIYIR 1006


>emb|CAN60490.1| hypothetical protein VITISV_030841 [Vitis vinifera]
          Length = 1000

 Score =  162 bits (410), Expect = 8e-37
 Identities = 121/378 (32%), Positives = 178/378 (47%), Gaps = 35/378 (9%)
 Frame = -1

Query: 1367 NASTFSNYWILDSGCTTHMT*NRKLIKNITAYDGG-V*FGNNEPCKEI*KGKLNIHGKLS 1191
            N++   + W LDSGC+ HMT +      +T   GG V FG+N   + I +G +  +G  S
Sbjct: 525  NSNAKEDKWFLDSGCSRHMTGDESKFAFLTKRKGGYVTFGDNAKGRIIGQGNIG-NGTSS 583

Query: 1190 STGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNAEN-SITAGKRMENLYILN- 1017
                VLLV  + +NLL I+ LCD G  V F+ + C I D   N +I  G R EN+Y +N 
Sbjct: 584  LIESVLLVDGLKHNLLSISQLCDKGFKVIFEASHCIIKDIQNNKTIFMGHRCENVYGINI 643

Query: 1016 -----EDTCLLRNTENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFST----QSCQT 864
                  D C     + + + H+ LG  +   I  L K   VR LP   F      ++CQ 
Sbjct: 644  SKYDGHDRCFSSMHDQSWLWHRRLGHANMDLISQLNKDELVRGLPKTNFQKDKVYEACQM 703

Query: 863  TNKQGHLLKKKN-IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGLRSLKR 687
              +  +  K KN I       L  ++     +   L G  ++  +    +    +  L +
Sbjct: 704  GKQIKNTFKNKNFISTSRPLELLHMDLFGPSRTPSLRGKSYAYVIVDDFSRYTWVLFLSQ 763

Query: 686  KGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIHHQFSANRIPQ* 507
            K              +N+      C+R D G EF + +F+++C  HGI+H FSA R PQ 
Sbjct: 764  KSEAFYEFSKFCNKVQNKKGFTITCIRSDHGREFENFDFEEYCNKHGINHNFSALRTPQQ 823

Query: 506  NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR-------------- 369
            N ++ERKNRT+ E AR M N++ +PK FW +AV+T+ Y+ NR LLR              
Sbjct: 824  NGVVERKNRTLQEMARTMLNENNLPKYFWAEAVNTSCYVLNRILLRPILKKTPYELWKNK 883

Query: 368  --------VFGSECFIHN 339
                    VFG +CFI N
Sbjct: 884  KPNIIYFKVFGCKCFILN 901


>emb|CAN74302.1| hypothetical protein VITISV_031363 [Vitis vinifera]
          Length = 556

 Score =  154 bits (389), Expect = 2e-34
 Identities = 129/418 (30%), Positives = 190/418 (45%), Gaps = 36/418 (8%)
 Frame = -1

Query: 1484 VKNRSKQGESSFMTAQKYIKNTKKVWKEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT* 1305
            +++ S+  ESS    +K + N          C +    L+  +    W LDSGC+ HMT 
Sbjct: 93   MRDESESEESSEXXNEKEVANM---------CFMAIBELDEGSKKVKWFLDSGCSRHMTG 143

Query: 1304 NRKLIKNITAYDGG-V*FGNNEPCKEI*KGKLNIHGKLSSTGE-VLLVQHMSYNLLRINN 1131
            +      +T   GG V FG+NE  + I  G+ NI    SS  E VLLV  + +NLL I+ 
Sbjct: 144  DESKFXFLTKRKGGYVTFGDNEKGRII--GQDNIGNGTSSLIESVLLVDGLKHNLLSISQ 201

Query: 1130 LCDNGL*VRFQRNLCYIFD-NAENSITAGKRMENLYILN------EDTCLLRNTENTSI* 972
            LCD G  V F+ + C I D   + +I  G R +N+Y +N       D C     + + + 
Sbjct: 202  LCDKGFKVIFEASHCIIKDIQNDKTIFMGXRCDNVYAINISKYDGHDRCFSSMHDQSWLW 261

Query: 971  HKILGQIHYSNI*NLVKYNAVRSLPSNKFST----QSCQTTNKQGHLLKKKN-IQAMGS* 807
            H+ LG  +   I  L K   VR LP   F      + CQ   +  +  K K  I      
Sbjct: 262  HRRLGHANMDLISQLNKDELVRGLPKINFQKDKVCEXCQMGKQIKNSFKNKXFISTTRPL 321

Query: 806  TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEAR 627
             L  ++     +   L G  ++ ++    +    +  L +K              +NE  
Sbjct: 322  ELLHMDLFGPSRTPSLGGKSYAFFIVDDFSRYTWVFFLSQKNEAFYEVSKFCNKVQNEKG 381

Query: 626  RKFKCVRFD*GGEFLSLEFDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFN 447
                C+R   G EF +++F+ +C  HGI+H FSA R PQ N ++ERKNRT+ E AR M N
Sbjct: 382  FTITCIRSYHGREFQNIDFEDYCNEHGINHNFSAPRTPQQNGVVERKNRTLQEMARTMLN 441

Query: 446  KSEIPKTFWVDAVHTTIYL*NRGLLR----------------------VFGSECFIHN 339
            ++ +PK FWV+AV+T+ Y  N  LLR                      VFG +CFI N
Sbjct: 442  ENNLPKYFWVEAVNTSCYXLNIILLRPILKKTPYELXKNKKPNISYFKVFGCKCFILN 499


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  151 bits (381), Expect = 2e-33
 Identities = 155/582 (26%), Positives = 241/582 (41%), Gaps = 43/582 (7%)
 Frame = -1

Query: 1961 NTTKTLITSKLNKSSIKLERLIRNGKAHNDKRGLGYINTKG--TSATQFVRSIVPGEENS 1788
            N TK++    LNK S  L+ +++ GK   ++RGLG+ +     T+ T+FV +        
Sbjct: 426  NMTKSI--KMLNKGSDMLDZVLQLGKKVGNQRGLGFNHKSAGRTTMTEFVPA-------- 475

Query: 1787 SYIANXXXXXXXXXXXKLHAAPQVSRIELLCYKQQQSKKIAVDYLASQ*QQNDQLTRQRT 1608
                                                  K +     SQ +     T+Q+ 
Sbjct: 476  --------------------------------------KNSTGATMSQHRSRHHGTQQKR 497

Query: 1607 TVPLSDKQPSRTNTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQKYI 1428
                S ++  R +  G   H   + +HL  H +  T           QG SS        
Sbjct: 498  ----SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT-----------QGSSS-------- 534

Query: 1427 KNTKKVW--KEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNI----TAYDG 1266
               K +W  K K   L+    L AS   + W LDSGC+ HMT  ++ + NI    T+Y  
Sbjct: 535  -GRKMMWVPKHKIVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLVNIEPCSTSY-- 590

Query: 1265 GV*FGNNEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLC 1086
             V FG+    K    GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++ C
Sbjct: 591  -VTFGDGSKGKITGMGKL-VHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSEC 648

Query: 1085 YIFDNAENSITAGKRM-ENLYIL------NEDTCLLRNTENTSI*HKILGQIHYSNI*NL 927
             + +     +  G R  +N Y+       +  TCL    +   I H+  G +H   +  +
Sbjct: 649  LVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKI 708

Query: 926  VKYNAVRSLPSNKFSTQ----SCQTTNKQGHLLKKKNIQAMGS*TLYILNF--VDQCKL* 765
            +   AVR +P+ K         CQ   KQ  +  +K      S  L +L+   +   ++ 
Sbjct: 709  IDKGAVRGIPNLKIEEGRICGECQI-GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVE 767

Query: 764  DLEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEF 585
             L G +++  +    +    +  ++ K  T           + E     K +R D G EF
Sbjct: 768  SLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREF 827

Query: 584  LSLEFDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVH 405
             + +F +FC S GI H+FSA   PQ N I+ERKNRT+ EAAR M +  E+P   W +A++
Sbjct: 828  ENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMN 887

Query: 404  TTIYL*NRGLLR----------------------VFGSECFI 345
            T  Y+ NR  LR                      +FGS C+I
Sbjct: 888  TACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYI 929


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  147 bits (372), Expect = 2e-32
 Identities = 130/458 (28%), Positives = 197/458 (43%), Gaps = 41/458 (8%)
 Frame = -1

Query: 1595 SDKQPSRTNTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQKYIKNTK 1416
            S ++  R +  G   H   + +HL  H +  T                    Q      K
Sbjct: 497  SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT--------------------QSSNSRKK 536

Query: 1415 KVW--KEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNI----TAYDGGV*F 1254
             +W  K K   L+    L AS   + W LDSGC+ HMT  ++ + NI    T+Y   V F
Sbjct: 537  MMWVPKHKAVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLLNIEPCSTSY---VTF 592

Query: 1253 GNNEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFD 1074
            G+    K I  GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++ C + +
Sbjct: 593  GDGSKGKIIGMGKL-VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTN 651

Query: 1073 NAENSITAGKRM-ENLYILN------EDTCLLRNTENTSI*HKILGQIHYSNI*NLVKYN 915
                 +  G R  +N Y+          TCL    +   I H+  G +H   +  ++   
Sbjct: 652  EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKG 711

Query: 914  AVRSLPSNKFSTQ----SCQTTNKQGHLLKKKNIQAMGS*TLYILNF--VDQCKL*DLEG 753
            AVR +P+ K         CQ   KQ  +  +K      S  L +L+   +   ++  L G
Sbjct: 712  AVRGIPNLKIEEGRICGECQI-GKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGG 770

Query: 752  TKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLE 573
             +++  +    +    +  ++ K  T           + E     K +R D G EF +  
Sbjct: 771  KRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSR 830

Query: 572  FDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIY 393
            F +FC S GI H+FSA   PQ N I+ERKNRT+ EAAR M +  E+P   W +A++T  Y
Sbjct: 831  FTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 890

Query: 392  L*NRGLLR----------------------VFGSECFI 345
            + NR  LR                      +FGS C+I
Sbjct: 891  IHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYI 928


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  147 bits (370), Expect = 3e-32
 Identities = 130/458 (28%), Positives = 198/458 (43%), Gaps = 41/458 (8%)
 Frame = -1

Query: 1595 SDKQPSRTNTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQKYIKNTK 1416
            S ++  R +  G   H   + +HL  H +  T                    Q      K
Sbjct: 497  SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT--------------------QSSNSRKK 536

Query: 1415 KVW--KEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNI----TAYDGGV*F 1254
             +W  K K   L+    L AS   + W LDSGC+ HMT  ++ + NI    T+Y   V F
Sbjct: 537  MMWVPKHKAVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLLNIEPCSTSY---VTF 592

Query: 1253 GNNEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFD 1074
            G+    K I  GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++ C + +
Sbjct: 593  GDGSKGKIIGMGKL-VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTN 651

Query: 1073 NAENSITAGKRM-ENLYILN------EDTCLLRNTENTSI*HKILGQIHYSNI*NLVKYN 915
                 +  G R  +N Y+          TCL    +   I H+  G +H   +  ++  +
Sbjct: 652  EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKS 711

Query: 914  AVRSLPSNKFSTQ----SCQTTNKQGHLLKKKNIQAMGS*TLYILNF--VDQCKL*DLEG 753
            AVR +P+ K         CQ   KQ  +  +K      S  L +L+   +   ++  L G
Sbjct: 712  AVRGIPNLKIEEGRICGECQI-GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGG 770

Query: 752  TKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLE 573
             +++  +    +    +  ++ K  T           + E     K +R D G EF +  
Sbjct: 771  KRYAYVVVDDFSRFTWVNFIREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGREFENSR 830

Query: 572  FDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIY 393
            F +FC S GI H+FSA   PQ N I+ERKNRT+ EAAR M +  E+P   W +A++T  Y
Sbjct: 831  FTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 890

Query: 392  L*NRGLLR----------------------VFGSECFI 345
            + NR  LR                      +FGS C+I
Sbjct: 891  IHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYI 928


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  146 bits (369), Expect = 4e-32
 Identities = 142/553 (25%), Positives = 237/553 (42%), Gaps = 29/553 (5%)
 Frame = -1

Query: 1940 TSKLNKSSIKLERLIRN----GKAHND-----KRGLGYINTKGTSATQFVRSIVPGEENS 1788
            + K+ +   +L+++I N     +AH D     K  +G++N+K  + T+ ++ +  G +  
Sbjct: 355  SEKILQQEAQLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLENMTKSIKMLNKGSDLL 414

Query: 1787 SYIANXXXXXXXXXXXKLH--AAPQVSRIELLCYKQQQSKKIAVDYLASQ*QQNDQLTRQ 1614
              +               +  +A + +  E +  K      +      SQ +     T+Q
Sbjct: 415  DEVLQLGKNVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGATM------SQHRSRHHGTQQ 468

Query: 1613 RTTVPLSDKQPSRTNTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQK 1434
            +     S ++  R +  G   H   + +HL  H +  T           Q  SS      
Sbjct: 469  KK----SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT-----------QSSSS------ 507

Query: 1433 YIKNTKKVW--KEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNI----TAY 1272
                 K +W  K K   L+    L AS   + W LDSGC+ HMT  ++ + NI    T+Y
Sbjct: 508  ---GRKMMWVPKHKTVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLVNIEPCSTSY 563

Query: 1271 DGGV*FGNNEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRN 1092
               V FG+    K    GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++
Sbjct: 564  ---VTFGDGSKGKITGMGKL-VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 619

Query: 1091 LCYIFDNAENSITAGKR-MENLYILN------EDTCLLRNTENTSI*HKILGQIHYSNI* 933
             C + +     +  G R  +N Y+          TCL    +   I H+  G +H   + 
Sbjct: 620  ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMK 679

Query: 932  NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLKKKNIQAMGS*TLYIL-----NFVDQCKL 768
             ++   AVR +P+ K          + G  +K  N +     T  +L     + +   ++
Sbjct: 680  KIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQV 739

Query: 767  *DLEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGE 588
              L   +++  +    +    +  ++ K  T           + E     K +R D G E
Sbjct: 740  ESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGRE 799

Query: 587  FLSLEFDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAV 408
            F + +F +FC S GI H+FSA   PQ N I+ERKNRT+ EAAR M +  E+P   W +A+
Sbjct: 800  FENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAM 859

Query: 407  HTTIYL*NRGLLR 369
            +T  Y+ NR  LR
Sbjct: 860  NTACYIHNRVTLR 872


>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  146 bits (369), Expect = 4e-32
 Identities = 130/458 (28%), Positives = 198/458 (43%), Gaps = 41/458 (8%)
 Frame = -1

Query: 1595 SDKQPSRTNTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQKYIKNTK 1416
            S ++  R +  G   H   + +HL PH                Q  +S           K
Sbjct: 497  SKRKKWRCHYCGKYGHIKPFCYHLHPH-------------HGTQSSNS---------RKK 534

Query: 1415 KVW--KEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNI----TAYDGGV*F 1254
             +W  K K   L+    L AS   + W LDSGC+ HMT  ++ + NI    T+Y   V F
Sbjct: 535  MMWVPKHKAVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLLNIEPCSTSY---VTF 590

Query: 1253 GNNEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFD 1074
            G+    K I  GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++ C + +
Sbjct: 591  GDGSKGKIIGMGKL-VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTN 649

Query: 1073 NAENSITAGKRM-ENLYILN------EDTCLLRNTENTSI*HKILGQIHYSNI*NLVKYN 915
                 +  G R  +N Y+          TCL    +   I H+  G +H   +  ++   
Sbjct: 650  EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKG 709

Query: 914  AVRSLPSNKFSTQ----SCQTTNKQGHLLKKKNIQAMGS*TLYILNF--VDQCKL*DLEG 753
            AVR +P+ K         CQ   KQ  +  +K      S  L +L+   +   ++  L G
Sbjct: 710  AVRGIPNLKIEEGRICGECQI-GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGG 768

Query: 752  TKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLE 573
             +++  +    +    ++ ++ K  T           + E     K +R D G EF +  
Sbjct: 769  KRYAYVVVDDFSRFTWVKFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSR 828

Query: 572  FDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIY 393
              +FC S GI H+FSA   PQ N I+ERKNRT+ EAAR M +  E+P   W +A++T  Y
Sbjct: 829  LTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 888

Query: 392  L*NRGLLR----------------------VFGSECFI 345
            + NR  LR                      +FGS C+I
Sbjct: 889  IHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYI 926


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  145 bits (367), Expect = 7e-32
 Identities = 148/584 (25%), Positives = 246/584 (42%), Gaps = 52/584 (8%)
 Frame = -1

Query: 1940 TSKLNKSSIKLERLIRNGKAHND---------KRGLGYINTKGTSATQFVRSIVPGEENS 1788
            + K+ +   +L+++I N +A  +         K  +G++N+K  + T+ ++ +  G +  
Sbjct: 381  SEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDML 440

Query: 1787 SYIANXXXXXXXXXXXKLH--AAPQVSRIELLCYKQQQSKKIAVDYLASQ*QQNDQLTRQ 1614
              +               +  +A +++  E +  K      +      SQ +     T+Q
Sbjct: 441  DEVLQLGKNVGNQRGLGFNHKSACRITMTEFVPAKNSTGATM------SQHRSRHHGTQQ 494

Query: 1613 RTTVPLSDKQPSRTNTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQK 1434
            +     S ++  R +  G   H   + +HL  H +  T           Q  SS      
Sbjct: 495  KK----SKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT-----------QSSSS------ 533

Query: 1433 YIKNTKKVW--KEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNI----TAY 1272
                 K +W  K K   L+    L AS   + W LDSGC+ HMT  ++ + NI    T+Y
Sbjct: 534  ---GRKMMWVPKHKIVSLVVHTSLRASAKED-WYLDSGCSRHMTGVKEFLVNIEPCSTSY 589

Query: 1271 DGGV*FGNNEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRN 1092
               V FG+    K    GKL +H  L S  +VLLV+ ++ NL+ I+ LCD G  V F ++
Sbjct: 590  ---VTFGDGSKGKITGMGKL-VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKS 645

Query: 1091 LCYIFDNAENSITAGKRM-ENLYILN------EDTCLLRNTENTSI*HKILGQIHYSNI* 933
             C + +     +  G R  +N Y+          TCL    +   I H+  G +H   + 
Sbjct: 646  ECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMK 705

Query: 932  NLVKYNAVRSLPSNKFSTQ----SCQTTNKQGHLLKKKNIQAMGS*TLYILNF--VDQCK 771
             ++   AVR +P+ K         CQ   KQ  +  +K      S  L +L+   +   +
Sbjct: 706  KIIDKGAVRGIPNLKIEEGRICGECQI-GKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQ 764

Query: 770  L*DLEGTKFSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GG 591
            +  L G +++  +    +    +  ++ K  T           + E     K +R D G 
Sbjct: 765  VESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGR 824

Query: 590  EFLSLEFDKFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDA 411
            EF + +F +FC S GI H+FSA   PQ N I+ERKNRT+ EA R M +  E+P   W +A
Sbjct: 825  EFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEATRVMLHAKELPYNLWAEA 884

Query: 410  VHTTIYL*NRGLLR----------------------VFGSECFI 345
            ++T  Y+ NR  LR                      +FGS C+I
Sbjct: 885  MNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYI 928


>emb|CAN65575.1| hypothetical protein VITISV_001033 [Vitis vinifera]
          Length = 440

 Score =  144 bits (364), Expect = 2e-31
 Identities = 116/373 (31%), Positives = 169/373 (45%), Gaps = 36/373 (9%)
 Frame = -1

Query: 1343 WILDSGCTTHMT*NRKLIKNITAYDGG-V*FGNNEPCKEI*KGKLNIHGKLSSTGE-VLL 1170
            W LDSGC+ +MT +      +    GG V FG+N   + I +G  NI    SS  E VLL
Sbjct: 61   WFLDSGCSRYMTGDESKFSXLIKKXGGYVTFGDNAKGRIIGQG--NIGNDTSSLIESVLL 118

Query: 1169 VQHMSYNLLRINNLCDNGL*VRFQRNLCYIFD-NAENSITAGKRMENLYILN------ED 1011
            V  + + LL I+ LC+ G  V F+ + C I D   + +I  G R +N+Y +N       D
Sbjct: 119  VDGLKHILLSISQLCEKGFKVIFEASHCIIKDIQNDKTIFMGHRCDNVYAINISKYDGYD 178

Query: 1010 TCLLRNTENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFSTQSCQTTNKQGHLLK-- 837
             C     + + + H  LG  +   I  L KY  VR LP   F           G  +K  
Sbjct: 179  RCFSSMHDQSWLWHXRLGHANMDLISQLNKYELVRGLPKLNFKKDKVCEAYXVGKXIKNS 238

Query: 836  ---KKNIQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGLRSLKRKGYTLSX 666
               K  I       L  ++     +   L G   +  +    +    +  L +K      
Sbjct: 239  FKNKNFISXSRPLELLHMDLFGPSRTPSLGGKSHAYVIVDDXSRYTWVLFLSQKNEAFYE 298

Query: 665  XXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIHHQFSANRIPQ*NKIMERK 486
                    +NE      C+R D G EF +++F+++C  HGI+H FSA+R  Q N ++ERK
Sbjct: 299  FSKFCNNVQNEKDFTITCIRSDHGREFENIDFEEYCNEHGINHNFSASRTLQQNGVVERK 358

Query: 485  NRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR--------------------- 369
            NRT+ E AR M N++ +PK FW +AV+T+ Y+ NR LLR                     
Sbjct: 359  NRTLQEMARTMLNENNLPKYFWAEAVNTSXYVLNRILLRXILKKNPYELWKNXKPNISYF 418

Query: 368  -VFGSECFIHNND 333
             VFG +CFI N +
Sbjct: 419  KVFGCKCFILNTE 431


>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1643

 Score =  142 bits (359), Expect = 6e-31
 Identities = 108/399 (27%), Positives = 183/399 (45%), Gaps = 35/399 (8%)
 Frame = -1

Query: 1427 KNTKKVWKEKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNITAY-DGGV*FG 1251
            +N+K   + +D      Y   A      W  DSG + HMT ++  + N ++  +  V FG
Sbjct: 586  RNSKMYVRREDLYCHVAYTSIAEGVKKPWYFDSGASRHMTGSQANLNNYSSVKESNVMFG 645

Query: 1250 NNEPCKEI*KGKLNIHGKLSSTGE-----VLLVQHMSYNLLRINNLCDNGL*VRFQRNLC 1086
                     KG++   G L+ T +     V  V+ ++ NL+ ++ LCD GL V F +  C
Sbjct: 646  GGA------KGRIKGKGDLTETEKPHLTNVYFVEGLTANLISVSQLCDEGLTVSFNKVKC 699

Query: 1085 YIFDNA-ENSITAGKRMENLYILNEDT-CLLRNTENTSI*HKILGQIHYSNI*NLVKYNA 912
            +  +   +N++T  +   N Y+  E   CL    E+  + H+ LG ++  ++  LV    
Sbjct: 700  WATNERNQNTLTGVRTGNNCYMWEEPKICLRAEKEDPVLWHQRLGHMNARSMSKLVNKEM 759

Query: 911  VRSLPSNKFSTQSCQTTNKQGHLLKKKNIQAMGS*TLYILNFVDQCKL*DLE-----GTK 747
            VR +P  K   +       QG  ++ ++ +  G  T  +L+ +    +  ++     G +
Sbjct: 760  VRGVPELKHIEKIVCGACNQGKQIRVQHKRVEGIQTTQVLDLIHMDLMGPMQTESIAGKR 819

Query: 746  FSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFD 567
            +   L    +    +R ++ K  T +         +NE +   K +R D GGEF++  F+
Sbjct: 820  YVFVLVDDFSRYAWVRFIREKSETANSFKILALQLKNEKKMGIKQIRSDRGGEFMNEAFN 879

Query: 566  KFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL* 387
             FC S GI HQ+SA R PQ N ++ERKNRT+ E AR M + + +P+ FW +A+ T  Y+ 
Sbjct: 880  SFCESQGIFHQYSAPRTPQSNGVVERKNRTLQEMARAMIHGNGVPEKFWAEAISTACYVI 939

Query: 386  NR----------------------GLLRVFGSECFIHNN 336
            NR                         RVFG  C+I N+
Sbjct: 940  NRVYVRLGSDKTPYEIWKGKKPNLSYFRVFGCVCYIMND 978


>gb|ABN08973.1| Peptidase aspartic, catalytic; Polynucleotidyl transferase,
            Ribonuclease H fold [Medicago truncatula]
          Length = 972

 Score =  139 bits (350), Expect = 7e-30
 Identities = 124/456 (27%), Positives = 200/456 (43%), Gaps = 38/456 (8%)
 Frame = -1

Query: 1598 LSDKQPSRTNTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQKYIKNT 1419
            L+ +   + N  G TH      HH   HS A    +   KNR+K+     M    ++ ++
Sbjct: 416  LNSQIVGKPNGIGFTHEHLKKEHHSNSHSQALEHYQ---KNRNKKPVKKIM----FVTSS 468

Query: 1418 KKVWKEKDTCLLTEYMLNASTFSNYWIL--DSGCTTHMT*NRKLIKNITAYDGG-V*FGN 1248
             KV    D  L     L+ S  + Y  +  DSGC+ HMT     ++N+  Y    V FG+
Sbjct: 469  SKV-SVPDKMLEHSVELSISEKNGYLSVYFDSGCSRHMTGVESFLENVRTYAKSCVTFGD 527

Query: 1247 NEPCKEI*KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNA 1068
                K +  G L   G       VLLV  ++ NL+ I+ LCD GL V F +  C + D  
Sbjct: 528  GAKGKIVEIGDLVREGS-PRLSNVLLVNGLTANLISISQLCDQGLSVNFSKTECQVLDGK 586

Query: 1067 ENSITAGKRM-ENLYI------LNEDTCLLRNTENTSI*HKILGQIHYSNI*NLVKYNAV 909
                  G R  +N Y+       +  +CL+   E   + H+ LG ++   +   + ++A+
Sbjct: 587  GKLSMMGTRSKDNCYLWMSQEKAHLSSCLISKDEEVKLWHQKLGHVNMQGVKKAISHDAI 646

Query: 908  RSLPSNKFSTQS----CQTTNKQGHLLKKKNIQAMGS*TLYILNF--VDQCKL*DLEGTK 747
            R LP    + +S    CQ   KQ  +   +      S TL +L+   + Q ++  + G +
Sbjct: 647  RGLPKLDITERSICGECQI-GKQIRVSHPRLEHQGTSKTLELLHIDLMRQMQVASIGGKR 705

Query: 746  FSCWL*TTSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFD 567
            +   +    +    +  ++ K  T           + E  R    +R D G EF +  F 
Sbjct: 706  YVLVVVDDFSRFTWVNFIREKSDTFESFKELCIQLQREKNRGIVRIRSDHGTEFENSRFH 765

Query: 566  KFCASHGIHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL* 387
            +FCA  GI H+FS+   PQ N ++ERKNRT+ E+AR M +   +P  FW +A++T  ++ 
Sbjct: 766  EFCAKEGIRHEFSSPITPQQNGVVERKNRTLQESARVMLHAKHLPYHFWAEAMNTACHVH 825

Query: 386  NRGLLR----------------------VFGSECFI 345
            NR  LR                      +FGS+C+I
Sbjct: 826  NRVTLRTGTTTTLYELWKERKLTVKYFHIFGSKCYI 861


>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score =  139 bits (350), Expect = 7e-30
 Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 36/375 (9%)
 Frame = -1

Query: 1352 SNYWILDSGCTTHMT*NRKLIKNITAYDGG-V*FGNNEPCKEI*KGKLNIHGKLSSTGEV 1176
            +N W LDSGC+ HMT ++    ++T Y+GG V FG+N+      KG +   GK+      
Sbjct: 568  NNTWYLDSGCSKHMTGDKTKFLSLTTYEGGSVTFGDNK------KGNIVAMGKV------ 615

Query: 1175 LLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFD-NAENSITAGKRMENLYILNED---- 1011
              V+ + +NLL I+  CD G  V+F +  C I +   +  I  G R  N YI++ D    
Sbjct: 616  --VEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQ 673

Query: 1010 ---TCLLRNTENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFST-QSCQTTNKQGHL 843
               TCL    +++ + HK LG   +S +  L   + V  LPS KF   Q C    +   +
Sbjct: 674  INLTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVCDACARGKQV 733

Query: 842  LKKKNIQAMGS*TLYI-LNFVDQC---KL*DLEGTKFSCWL*TTSA**HGLRSLKRKGYT 675
                  + + S T  + L  +D C   ++    G ++   +    +    +  L  K  T
Sbjct: 734  RSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYTWVIFLSSKDET 793

Query: 674  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIHHQFSANRIPQ*NKIM 495
                       +N +  K   +R D G EF + +FD     +G+ H FSA R PQ N ++
Sbjct: 794  YDEFLVFAKRVQNLSGHKIMHIRSDHGKEFENYKFDDLSRDNGLDHNFSAPRTPQQNGVV 853

Query: 494  ERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL------------------- 372
            ERKNRT+ E +  M   SE+P+ FW +AV+T  ++ NR ++                   
Sbjct: 854  ERKNRTLEEMSGTMLIASELPRNFWAEAVNTACHIINRAMMRPIINKTPYELYFGKKPNI 913

Query: 371  ---RVFGSECFIHNN 336
               R FG +C++HNN
Sbjct: 914  TYFRTFGCKCYVHNN 928


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score =  139 bits (350), Expect = 7e-30
 Identities = 110/375 (29%), Positives = 173/375 (46%), Gaps = 36/375 (9%)
 Frame = -1

Query: 1352 SNYWILDSGCTTHMT*NRKLIKNITAYDGG-V*FGNNEPCKEI*KGKLNIHGKLSSTGEV 1176
            +N W LDSGC+ HMT ++    ++T Y+GG V FG+N+      KG +   GK+      
Sbjct: 568  NNTWYLDSGCSKHMTGDKTKFLSLTTYEGGSVTFGDNK------KGNIVAMGKV------ 615

Query: 1175 LLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFD-NAENSITAGKRMENLYILNED---- 1011
              V+ + +NLL I+  CD G  V+F +  C I +   +  I  G R  N YI++ D    
Sbjct: 616  --VEGLKHNLLSISQFCDKGNTVKFDKEKCLIINIKTKKVILEGTRKGNTYIVDLDLVPQ 673

Query: 1010 ---TCLLRNTENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFST-QSCQTTNKQGHL 843
               TCL    +++ + HK LG   +S +  L   + V  LPS KF   Q C    +   +
Sbjct: 674  INLTCLSVIEDDSLLWHKRLGHASFSLLEKLRSKDLVLGLPSIKFHIDQVCDACARGKQV 733

Query: 842  LKKKNIQAMGS*TLYI-LNFVDQC---KL*DLEGTKFSCWL*TTSA**HGLRSLKRKGYT 675
                  + + S T  + L  +D C   ++    G ++   +    +    +  L  K  T
Sbjct: 734  RSSFKSKTIVSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYTWVIFLSSKDET 793

Query: 674  LSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIHHQFSANRIPQ*NKIM 495
                       +N +  K   +R D G EF + +FD     +G+ H FSA R PQ N ++
Sbjct: 794  YDEFLVFAKRVQNLSGHKIMHIRSDHGKEFENYKFDDLSRDNGLDHNFSAPRTPQQNGVV 853

Query: 494  ERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLL------------------- 372
            ERKNRT+ E +  M   SE+P+ FW +AV+T  ++ NR ++                   
Sbjct: 854  ERKNRTLEEMSGTMLIASELPRNFWAEAVNTACHIINRAMMRPIINKTPYELYFGKKPNI 913

Query: 371  ---RVFGSECFIHNN 336
               R FG +C++HNN
Sbjct: 914  TYFRTFGCKCYVHNN 928


>emb|CAN76677.1| hypothetical protein VITISV_022012 [Vitis vinifera]
          Length = 889

 Score =  139 bits (349), Expect = 9e-30
 Identities = 110/381 (28%), Positives = 165/381 (43%), Gaps = 34/381 (8%)
 Frame = -1

Query: 1379 EYMLNASTFSNYWILDSGCTTHMT*NRKLIKNITAYDGG-V*FGNNEPCKEI*KGKLNIH 1203
            E  L   +  + W LDSGC+ HMT        +T    G + FG+N   + I +G +  +
Sbjct: 349  EKELREGSKKDKWFLDSGCSRHMTNYESKFAFLTKKKRGYITFGDNAKGRIIGQGNIG-N 407

Query: 1202 GKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNAENSITAGKRMENLYI 1023
            G  S    VL +  + +NLL I+ LCD  +               + +I  G R +N+Y+
Sbjct: 408  GTSSLIESVLFLDGLKHNLLSISQLCDKDI-------------QNDKTIFMGHRCDNVYV 454

Query: 1022 LN------EDTCLLRNTENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKFST----QS 873
            +N       D C     +   + H+ LG  +   I  L K   VR LP   F      ++
Sbjct: 455  INISKYDGHDRCFSSMHDQIWLGHRRLGHANMDLISQLNKDELVRGLPKINFQKDTVCEA 514

Query: 872  CQTTNKQGHLLKKKN-IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA**HGLRS 696
            CQ   +  +  K KN I       L  ++     +   L G  ++  +    +    +  
Sbjct: 515  CQVGKQIKNSFKNKNFISTSRPLELLHMDLFGPXRTPSLRGKSYAYVIMDDFSRYTWVLF 574

Query: 695  LKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIHHQFSANRI 516
            L +K              +NE      C+R D G E  +++F+++C  HGI H FSA R 
Sbjct: 575  LSQKNEAFYEFSKFCNKVQNEKGFAITCIRSDHGRELKNIDFEEYCNEHGIDHNFSAPRT 634

Query: 515  PQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NRGLLR----------- 369
            PQ N + ERKNRT+ E AR M N + +PK FW +AV+T+ Y+ NR LLR           
Sbjct: 635  PQQNGVFERKNRTLQEIARTMLNDNNLPKYFWAEAVNTSYYVLNRVLLRPILKKTLYELW 694

Query: 368  -----------VFGSECFIHN 339
                       VFG +CFI N
Sbjct: 695  KNKKPNISYFKVFGCKCFILN 715


>gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108712101|gb|ABF99896.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1969

 Score =  135 bits (340), Expect = 1e-28
 Identities = 115/447 (25%), Positives = 195/447 (43%), Gaps = 38/447 (8%)
 Frame = -1

Query: 1571 NTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQKYIKNTKKVWKEKDT 1392
            NTS  T  T+     +VP +  + P E+      KQ E      Q+  K  +K   E   
Sbjct: 682  NTSSSTPKTSE--PKMVPMTSKSKPVELPRPKNPKQVEHK--QNQRQTKPVEKTKYECTY 737

Query: 1391 CLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNITAYDGG--V*FGNNEPCKEI*KG 1218
            C    ++      SN W++DSGC+ HMT   K   ++T   G   + FG+    + + KG
Sbjct: 738  CGKAGHLDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKG 797

Query: 1217 KLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNAENSITAGKRM 1038
             + ++ K     +V LV  + YNLL ++ LCD  L VRF+++   + D +E+ +    R+
Sbjct: 798  TIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRV 856

Query: 1037 ENLYILNEDT-------CLLRNTENTSI*--HKILGQIHYSNI*NLVKYNAVRSLPSNKF 885
              ++  N D+       CL+ + EN  +   H+ LG I + ++  +   + +R LP  K 
Sbjct: 857  GRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKV 915

Query: 884  STQSCQTTNKQGHLLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTS 720
                     + G +    +     +   G   L  ++ V   ++  + G  +   +    
Sbjct: 916  QKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDF 975

Query: 719  A**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIH 540
            +    +  L+ K  T             E     + +R D G EF +  F+ FC S G+ 
Sbjct: 976  SRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVE 1035

Query: 539  HQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR------- 381
            HQFS+  +PQ N ++ERKNRT++E AR M ++   P+ FW +A+    ++ NR       
Sbjct: 1036 HQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTIL 1095

Query: 380  ---------------GLLRVFGSECFI 345
                             LRVFG +CF+
Sbjct: 1096 HKTPYELRFGRRPKVSHLRVFGCKCFV 1122


>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa Japonica
            Group]
          Length = 2145

 Score =  134 bits (338), Expect = 2e-28
 Identities = 115/447 (25%), Positives = 196/447 (43%), Gaps = 38/447 (8%)
 Frame = -1

Query: 1571 NTSGHTHHTATYIHHLVPHSYAATPREV*VKNRSKQGESSFMTAQKYIKNTKKVWKEKDT 1392
            NTS  T  T+     +VP +  + P E+      KQ E      Q+  K  +K   E   
Sbjct: 682  NTSSSTPKTSE--PKMVPMTSKSKPVELPRPKNPKQVEHK--QNQRQTKPVEKTKYECTY 737

Query: 1391 CLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNIT--AYDGGV*FGNNEPCKEI*KG 1218
            C    ++      SN W++DSGC+ HMT   K   ++T  + D  + FG+    + + KG
Sbjct: 738  CGKAGHLDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKG 797

Query: 1217 KLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNAENSITAGKRM 1038
             + ++ K     +V LV  + YNLL ++ LCD  L VRF+++   + D +E+ +    R+
Sbjct: 798  TIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRV 856

Query: 1037 ENLYILNEDT-------CLLRNTENTSI*--HKILGQIHYSNI*NLVKYNAVRSLPSNKF 885
              ++  N D+       CL+ + EN  +   H+ LG I + ++  +   + +R LP  K 
Sbjct: 857  GRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKV 915

Query: 884  STQSCQTTNKQGHLLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTS 720
                     + G +    +     +   G   L  ++ V   ++  + G  +   +    
Sbjct: 916  PKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDF 975

Query: 719  A**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIH 540
            +    +  L+ K  T             E     + +R D G EF +  F+ FC S G+ 
Sbjct: 976  SRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVE 1035

Query: 539  HQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR------- 381
            HQFS+  +PQ N ++ERKNRT++E AR M ++   P+ FW +A+    ++ NR       
Sbjct: 1036 HQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTIL 1095

Query: 380  ---------------GLLRVFGSECFI 345
                             LRVFG +CF+
Sbjct: 1096 HKTPYELRFGRRPKVSHLRVFGCKCFV 1122


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  133 bits (335), Expect = 4e-28
 Identities = 104/390 (26%), Positives = 161/390 (41%), Gaps = 33/390 (8%)
 Frame = -1

Query: 1403 EKDTCLLTEYMLNASTFSNYWILDSGCTTHMT*NRKLIKNITA-YDGGV*FGNNEPCKEI 1227
            +K+   +    +   +  N W++DSGCT HMT N KL   I   +   +  GN       
Sbjct: 10   KKNLVFIARQEIKEPSGGNTWLIDSGCTNHMTPNEKLFTKINRDFKVPIRVGNGAVMMSE 69

Query: 1226 *KGKLNIHGKLSSTG--EVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNAENSI- 1056
             KG + +  +    G  +VLLV  +  NLL +  +  NG  V  + N C I D+A   I 
Sbjct: 70   GKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNNYCTIHDSARKKIG 129

Query: 1055 ---TAGKRMENLYILNEDTCLLRNTENTSI*HKILGQIHYSNI*NLVKYNAVRSLPSNKF 885
                  K     ++ NE+T ++   E T + HK LG   +SN+  L     V  LP    
Sbjct: 130  EVEMVNKSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNV 189

Query: 884  STQSCQTTNKQGH----LLKKKNIQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*TTSA 717
                C++     H      K+   +A     L   +     +   + G+++       + 
Sbjct: 190  EEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSRYILTFIDDAT 249

Query: 716  **HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHGIHH 537
                +  LK K              EN A  + K +R D G E+LS EF +F   +GI  
Sbjct: 250  RMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEFSEFLEGNGIER 309

Query: 536  QFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR-------- 381
            Q +A   PQ N++ ER+NR+++E AR M    ++P   W +AVH   Y  NR        
Sbjct: 310  QLTAAYSPQQNEVSERRNRSLVEMARAMIKAKDLPLKLWAEAVHVAAYAQNRTPTRTLKN 369

Query: 380  --------------GLLRVFGSECFIHNND 333
                            ++VFGS C++H  D
Sbjct: 370  KTPLEAWSDSKPSVSHMKVFGSICYVHIPD 399


>emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]
          Length = 2256

 Score =  131 bits (330), Expect = 1e-27
 Identities = 102/389 (26%), Positives = 176/389 (45%), Gaps = 42/389 (10%)
 Frame = -1

Query: 1385 LTEYMLNASTF----SNYWILDSGCTTHMT*NRKLIKNIT--AYDGGV*FGNNEPCKEI* 1224
            L E +  +S F    SN W++DSGC+ HMT   K   ++T  + D  + FG+    + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 1223 KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNAENSITAGK 1044
            KG + ++ K     +V LV  + YNLL ++ LCD  L VRF+++   + D +E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 1043 RMENLYILNEDT-------CLLRNTENTSI*--HKILGQIHYSNI*NLVKYNAVRSLPSN 891
            R+  ++  N D+       CL+ + EN  +   H+ LG I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 890  KFSTQSCQTTNKQGHLLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*T 726
            K          + G +    +     +   G   L  ++ V   ++  + G  +   +  
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 725  TSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHG 546
              +    +  L+ K  T             E     + +R D G EF +  F+ FC S G
Sbjct: 953  DFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSG 1012

Query: 545  IHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR----- 381
            + HQFS+  +PQ N ++ERKNRT++E AR M ++   P+ FW +A+    ++ NR     
Sbjct: 1013 VEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRT 1072

Query: 380  -----------------GLLRVFGSECFI 345
                               LRVFG +CF+
Sbjct: 1073 ILHKTPYELRFGRRPKVSHLRVFGCKCFV 1101


>gb|ABF94836.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1948

 Score =  131 bits (330), Expect = 1e-27
 Identities = 102/389 (26%), Positives = 176/389 (45%), Gaps = 42/389 (10%)
 Frame = -1

Query: 1385 LTEYMLNASTF----SNYWILDSGCTTHMT*NRKLIKNIT--AYDGGV*FGNNEPCKEI* 1224
            L E +  +S F    SN W++DSGC+ HMT   K   ++T  + D  + FG+    + + 
Sbjct: 715  LLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMA 774

Query: 1223 KGKLNIHGKLSSTGEVLLVQHMSYNLLRINNLCDNGL*VRFQRNLCYIFDNAENSITAGK 1044
            KG + ++ K     +V LV  + YNLL ++ LCD  L VRF+++   + D +E+ +    
Sbjct: 775  KGTIKVNDKFMLK-DVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDIS 833

Query: 1043 RMENLYILNEDT-------CLLRNTENTSI*--HKILGQIHYSNI*NLVKYNAVRSLPSN 891
            R+  ++  N D+       CL+ + EN  +   H+ LG I + ++  +   + +R LP  
Sbjct: 834  RVGRVFFANFDSSAPGPSRCLIAS-ENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 892

Query: 890  KFSTQSCQTTNKQGHLLKKKN-----IQAMGS*TLYILNFVDQCKL*DLEGTKFSCWL*T 726
            K          + G +    +     +   G   L  ++ V   ++  + G  +   +  
Sbjct: 893  KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 952

Query: 725  TSA**HGLRSLKRKGYTLSXXXXXXXXXENEARRKFKCVRFD*GGEFLSLEFDKFCASHG 546
              +    +  L+ K  T             E     + +R D G EF +  F+ FC S G
Sbjct: 953  DFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSG 1012

Query: 545  IHHQFSANRIPQ*NKIMERKNRTMLEAARYMFNKSEIPKTFWVDAVHTTIYL*NR----- 381
            + HQFS+  +PQ N ++ERKNRT++E AR M ++   P+ FW +A+    ++ NR     
Sbjct: 1013 VEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRT 1072

Query: 380  -----------------GLLRVFGSECFI 345
                               LRVFG +CF+
Sbjct: 1073 ILHKTPYELRFGRRPKVSHLRVFGCKCFV 1101