BLASTX nr result
ID: Ephedra28_contig00004729
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00004729
(1318 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma ... 501 e-139
ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an... 492 e-136
ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I an... 485 e-134
ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I an... 484 e-134
ref|XP_001773900.1| predicted protein [Physcomitrella patens] gi... 484 e-134
ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citr... 477 e-132
ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I an... 476 e-132
ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Sela... 476 e-131
ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Sela... 474 e-131
ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, ... 470 e-130
ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycin... 469 e-130
ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I an... 469 e-129
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an... 462 e-127
gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlise... 459 e-126
ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata] ... 457 e-126
ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thalia... 457 e-126
ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I an... 456 e-126
ref|XP_002300385.1| DNA-directed RNA polymerase family protein [... 453 e-125
ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I an... 452 e-124
ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutr... 445 e-122
>gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma cacao]
Length = 383
Score = 501 bits (1290), Expect = e-139
Identities = 258/377 (68%), Positives = 290/377 (76%), Gaps = 5/377 (1%)
Frame = +3
Query: 198 KKKPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSE 377
KKK D+ DVP G+LPPHLELQRTRV+C DAPIHTE V YSGAYA+ GVDNSLRL
Sbjct: 12 KKKFSIWDLPDVPAGQLPPHLELQRTRVLCNKDAPIHTESVLYSGAYASMGVDNSLRLDH 71
Query: 378 FCKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDE 557
FC NFR+EV L +E +EFDM+GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSV+QDE
Sbjct: 72 FCHNFRVEVVRLTEEDMEFDMIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVVQDE 131
Query: 558 VLAHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQL 737
VLAHRLGLIPI VDPRLFEY S+ D NEKNTIVFKL+V C + T VK+D+L
Sbjct: 132 VLAHRLGLIPISVDPRLFEYMSENDQPNEKNTIVFKLHVHCKRGSPRIT-----VKSDEL 186
Query: 738 KWMPNGSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPG 905
KW+PNGSE K QDTLP A PI P Y DIII+KL PG
Sbjct: 187 KWLPNGSELIKESRKVASDSASKPETYTSFSCSQDTLPEFANNPIAPKYPDIIISKLGPG 246
Query: 906 QAIDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIE 1085
Q I+LEAHAVKG GK HAKWSPVATA YRMLPEV LLEE+E AE L ++CPV VFDIE
Sbjct: 247 QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEVEDDLAEGLKSKCPVNVFDIE 306
Query: 1086 DVA-GKKKAKVARPRDCTLCRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTE 1262
D+ GKK+A VARPR CTLCRECIR ++WEKRV + RVK+HFIFTIESTGALPPEVLFTE
Sbjct: 307 DLGKGKKRATVARPRACTLCRECIRDEEWEKRVAIHRVKDHFIFTIESTGALPPEVLFTE 366
Query: 1263 AVKILEEKCERILAELS 1313
AVKILE+KCER++ ELS
Sbjct: 367 AVKILEDKCERVITELS 383
>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
protein product [Vitis vinifera]
Length = 372
Score = 492 bits (1267), Expect = e-136
Identities = 247/372 (66%), Positives = 292/372 (78%), Gaps = 5/372 (1%)
Frame = +3
Query: 213 AMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNF 392
A+DM DVPKG+LPPH+ELQRTRV+C DAP HTE VQYSGAY++ GVDNSLR+ +FC NF
Sbjct: 6 ALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFCNNF 65
Query: 393 RIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHR 572
R+EV L+++ +EFDM+GID SIANAFRRIL+AE+PTMAIEKVLI NNTS++QDEVLAHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 573 LGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPN 752
LGLIPI DPRLF+ S+ D NEKNTIVF L+V+C + T VK+++LKW+P+
Sbjct: 126 LGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLT-----VKSNELKWLPH 180
Query: 753 GSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDL 920
GSE+ E QD+LP +++ I P + DIIIAKL PGQ I+L
Sbjct: 181 GSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIEL 240
Query: 921 EAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-G 1097
EAHAVKG GK HAKWSPVATA YRMLPEV LL+EIE AE+LV +CPV VFDIED+A G
Sbjct: 241 EAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVFDIEDIAKG 300
Query: 1098 KKKAKVARPRDCTLCRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKIL 1277
KKKA VARPR CTLCRECIRGDDW+K V +RRVK HFIFTIESTGALPPEVLF EAVK+L
Sbjct: 301 KKKATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIESTGALPPEVLFNEAVKVL 360
Query: 1278 EEKCERILAELS 1313
E+KCER++ ELS
Sbjct: 361 EDKCERVITELS 372
>ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Solanum lycopersicum]
Length = 393
Score = 485 bits (1248), Expect = e-134
Identities = 247/375 (65%), Positives = 287/375 (76%), Gaps = 5/375 (1%)
Frame = +3
Query: 204 KPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFC 383
K D+ D+PKGKLPPH+ELQRTRV+C S AP +TE V YSGAYAA GVDNS+R +F
Sbjct: 24 KVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAMGVDNSVRFEQFR 83
Query: 384 KNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVL 563
NF++E+ L ++ +EFDM+GID S+ANAFRRIL+AE+PTMAIEKVLI NNTS+IQDEVL
Sbjct: 84 DNFKVEIVRLEEDELEFDMIGIDPSLANAFRRILIAELPTMAIEKVLIANNTSIIQDEVL 143
Query: 564 AHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKW 743
AHRLGLIPIKVDPRLFEY S+ D NEKNTIVFKL+V+CTK D V + +LKW
Sbjct: 144 AHRLGLIPIKVDPRLFEYMSENDVPNEKNTIVFKLHVRCTKGSD-----RLRVLSSELKW 198
Query: 744 MPNGSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQA 911
+PNGSE E QDT P ++EPI P +DII+AKL PGQ
Sbjct: 199 LPNGSELILGTEHSASSSSAKPKTYTSFSCSQDTRPEFSDEPIAPKDADIIVAKLGPGQE 258
Query: 912 IDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV 1091
I+LEAHAVKG GK HAKWSPVATA YRMLPEV LL +IE +AE LV +CP+KVFDIED+
Sbjct: 259 IELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLRDIEDDEAEALVKKCPLKVFDIEDI 318
Query: 1092 A-GKKKAKVARPRDCTLCRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAV 1268
GKK+A VARPR CTLCRECIR + W+K V LRRV +HFIFTIESTGALPPEVLFTEAV
Sbjct: 319 GKGKKRATVARPRACTLCRECIREEGWDKNVALRRVNDHFIFTIESTGALPPEVLFTEAV 378
Query: 1269 KILEEKCERILAELS 1313
KILEEKCER++ ELS
Sbjct: 379 KILEEKCERVITELS 393
>ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Solanum tuberosum]
Length = 393
Score = 484 bits (1245), Expect = e-134
Identities = 246/375 (65%), Positives = 286/375 (76%), Gaps = 5/375 (1%)
Frame = +3
Query: 204 KPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFC 383
K D+ D+PKGKLPPH+ELQRTRV+C S AP +TE V YSGAYAA GVDNS+R +F
Sbjct: 24 KVSVWDLPDLPKGKLPPHIELQRTRVLCGSLAPTNTENVNYSGAYAAMGVDNSVRFEQFR 83
Query: 384 KNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVL 563
NF++E+ L ++ +EFDM+GID S+ANAFRRIL+AE+PTMAIEKVLI NNTS+IQDEVL
Sbjct: 84 NNFKVEIVRLEEDELEFDMIGIDPSLANAFRRILIAELPTMAIEKVLIANNTSIIQDEVL 143
Query: 564 AHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKW 743
AHRLGLIPI+VDPRLFEY S+ D NEKNTIVFKL+ +CTK D V + +LKW
Sbjct: 144 AHRLGLIPIEVDPRLFEYMSENDVPNEKNTIVFKLHARCTKGSD-----RLRVLSSELKW 198
Query: 744 MPNGSEY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQA 911
+PNGSE E QDTLP + +PI P +DII+AKL PGQ
Sbjct: 199 LPNGSELILGTEHSASSSSAKPKTYTSFSCSQDTLPEFSNDPIAPKDADIIVAKLGPGQE 258
Query: 912 IDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV 1091
I+LEAHAVKG GK HAKWSPVATA YRMLPEV LL +IE +AE LV +CPVKVFDIED+
Sbjct: 259 IELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLRDIEDDEAEALVKKCPVKVFDIEDI 318
Query: 1092 A-GKKKAKVARPRDCTLCRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAV 1268
GKK+A VARPR CTLCRECIR + W+K V LRRV +HFIFTIESTGALPPEVLFTEAV
Sbjct: 319 GKGKKRATVARPRICTLCRECIREEGWDKNVALRRVNDHFIFTIESTGALPPEVLFTEAV 378
Query: 1269 KILEEKCERILAELS 1313
KILEEKCER++ ELS
Sbjct: 379 KILEEKCERVITELS 393
>ref|XP_001773900.1| predicted protein [Physcomitrella patens] gi|162674744|gb|EDQ61248.1|
predicted protein [Physcomitrella patens]
Length = 360
Score = 484 bits (1245), Expect = e-134
Identities = 243/357 (68%), Positives = 284/357 (79%)
Frame = +3
Query: 243 KLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRIEVTTLNDE 422
+LPPHLELQRTRVVCA DAP +TE VQYSGAY A GVDNSLR+ +FCKN R+E+ ++N+E
Sbjct: 12 ELPPHLELQRTRVVCAPDAPSYTESVQYSGAYMAYGVDNSLRIEDFCKNLRVEIISMNEE 71
Query: 423 TVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLGLIPIKVDP 602
+EFD+VGIDA+IANAFRRIL+AEVPTMAIEKV I NNTSVIQDEVLAHRLGL+PIK DP
Sbjct: 72 DIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHRLGLLPIKADP 131
Query: 603 RLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGSEYEKPXXX 782
RLF+YKS+ + ANEKNTIVFK++V CT+ G+ +NS V +DQ+KW+P GSE
Sbjct: 132 RLFDYKSEEENANEKNTIVFKIDVVCTRK--GERVLNSSVTSDQMKWLPEGSEMP----- 184
Query: 783 XXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVKGQGKVHAK 962
Q LP + E I Y DII+AKLRPGQAI+LE HA+KG G +HAK
Sbjct: 185 -FNTMTKFTSFGSSQKNLPGLPAEGISCQYPDIIVAKLRPGQAIELEGHAIKGSGNIHAK 243
Query: 963 WSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKKAKVARPRDCTLC 1142
WSPVATARYRMLPEV L+E+I+G AE+LV +CP VFDIEDV KKA VARPR+CTLC
Sbjct: 244 WSPVATARYRMLPEVNLMEDIQGKLAEELVQKCPTGVFDIEDVGTVKKAIVARPRNCTLC 303
Query: 1143 RECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS 1313
REC+RG DW+KRVQL RVK+HFIFTIESTGAL PEVLFTEA+KIL EKC RI+ ELS
Sbjct: 304 RECVRGTDWDKRVQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEKCHRIITELS 360
>ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citrus clementina]
gi|557555856|gb|ESR65870.1| hypothetical protein
CICLE_v10008413mg [Citrus clementina]
Length = 421
Score = 477 bits (1228), Expect = e-132
Identities = 249/370 (67%), Positives = 286/370 (77%), Gaps = 5/370 (1%)
Frame = +3
Query: 219 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 398
D+ DVP+ KLPPH+E QRTRV C DAPIHTE V YSGAYA+ GVDNSL+L FC NFR+
Sbjct: 59 DLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 117
Query: 399 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 578
EV L + +EFD++GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSVIQDEVLAHRLG
Sbjct: 118 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 177
Query: 579 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 758
LIPI VDPRLFEY S+ D +NEKNTIVFKL+V C + T VKT++LKW+PNGS
Sbjct: 178 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT-----VKTNELKWLPNGS 232
Query: 759 EY---EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAH 929
E KP QD LP + PIRP DI IA+L PGQ I+LEAH
Sbjct: 233 ELPLETKPDSNPSSKPRTYTSFSSSQDLLPEFSNNPIRPML-DITIARLGPGQEIELEAH 291
Query: 930 AVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV-AGKKK 1106
AVKG GK HAKWSPVATA YRMLPE+ LLE++E DAEKLV CPV VFDIED+ +GKK+
Sbjct: 292 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 351
Query: 1107 AKVARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEE 1283
A VARPR CTLCREC+R G++WEKRV +RRVK+HFIFTIESTGAL PE LFTEAVKILE+
Sbjct: 352 ATVARPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 411
Query: 1284 KCERILAELS 1313
KCER++ ELS
Sbjct: 412 KCERVITELS 421
>ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Citrus sinensis]
Length = 382
Score = 476 bits (1226), Expect = e-132
Identities = 248/370 (67%), Positives = 287/370 (77%), Gaps = 5/370 (1%)
Frame = +3
Query: 219 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 398
D+ DVP+ KLPPH+E QRTRV C DAPIHTE V YSGAYA+ GVDNSL+L FC NFR+
Sbjct: 20 DLPDVPQ-KLPPHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVDNSLQLDHFCNNFRV 78
Query: 399 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 578
EV L + +EFD++GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSVIQDEVLAHRLG
Sbjct: 79 EVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRLG 138
Query: 579 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 758
LIPI VDPRLFEY S+ D +NEKNTIVFKL+V C + T VKT++LKW+PNGS
Sbjct: 139 LIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCERGGPRLT-----VKTNELKWLPNGS 193
Query: 759 EY---EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAH 929
E KP QD+LP + PIRP DI IA+L PGQ I+LEAH
Sbjct: 194 ELPLETKPDSNPLSKPRTYTSFSSSQDSLPEFSNNPIRPML-DITIARLGPGQEIELEAH 252
Query: 930 AVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDV-AGKKK 1106
AVKG GK HAKWSPVATA YRMLPE+ LLE++E DAEKLV CPV VFDIED+ +GKK+
Sbjct: 253 AVKGIGKTHAKWSPVATAWYRMLPEIVLLEDVEDEDAEKLVKTCPVNVFDIEDIGSGKKR 312
Query: 1107 AKVARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEE 1283
A VA+PR CTLCREC+R G++WEKRV +RRVK+HFIFTIESTGAL PE LFTEAVKILE+
Sbjct: 313 ATVAQPRACTLCRECLRCGEEWEKRVSIRRVKDHFIFTIESTGALSPETLFTEAVKILED 372
Query: 1284 KCERILAELS 1313
KCER++ ELS
Sbjct: 373 KCERVITELS 382
>ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein
SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 476 bits (1224), Expect = e-131
Identities = 243/358 (67%), Positives = 281/358 (78%)
Frame = +3
Query: 240 GKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRIEVTTLND 419
G LP HLELQRTRV+CASDAP +TE VQYSGAY++ DNSLRL +F +NF +E+ +L +
Sbjct: 5 GGLPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTE 64
Query: 420 ETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLGLIPIKVD 599
+ +EFDM+GIDA++ANAFRRIL+AEVPTMAIEKVLI +NTSVIQDEV AHRLGL+PIK D
Sbjct: 65 DDLEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKAD 124
Query: 600 PRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGSEYEKPXX 779
PRLF K++ D A EKNTIVF L VKCT+ G IN+ VK+DQLKW+P GS Y
Sbjct: 125 PRLFNEKTNEDVATEKNTIVFSLEVKCTRQ--GDRMINASVKSDQLKWLPGGSLYSMTDD 182
Query: 780 XXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVKGQGKVHA 959
QDT+ + I P Y DI++AKLRPGQAI+LEAHAVKG GK HA
Sbjct: 183 SNKTYTSFSCR----QDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHA 234
Query: 960 KWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKKAKVARPRDCTL 1139
KWSPVATA YRMLPEV LLEEIE AE+LV +CP+KVFDIED+ G K+A+VA PR CTL
Sbjct: 235 KWSPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGGKRARVAAPRSCTL 294
Query: 1140 CRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS 1313
CRECIRGDDWEKRVQLRRVK+HFIFT+ESTGALPPEVLFTEAVKIL KC+RI ELS
Sbjct: 295 CRECIRGDDWEKRVQLRRVKDHFIFTVESTGALPPEVLFTEAVKILSAKCQRIYNELS 352
>ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein
SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 474 bits (1220), Expect = e-131
Identities = 242/356 (67%), Positives = 280/356 (78%)
Frame = +3
Query: 246 LPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRIEVTTLNDET 425
LP HLELQRTRV+CASDAP +TE VQYSGAY++ DNSLRL +F +NF +E+ +L ++
Sbjct: 8 LPAHLELQRTRVICASDAPSYTETVQYSGAYSSINYDNSLRLGDFRRNFHVEIKSLTEDD 67
Query: 426 VEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLGLIPIKVDPR 605
+EFDM+GIDA++ANAFRRIL+AEVPTMAIEKVLI +NTSVIQDEV AHRLGL+PIK DPR
Sbjct: 68 LEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADPR 127
Query: 606 LFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGSEYEKPXXXX 785
LF K++ D A EKNTIVF L VKCT+ G IN+ VK+DQLKW+P GS Y
Sbjct: 128 LFNEKTNEDVATEKNTIVFSLEVKCTRQ--GDRMINASVKSDQLKWLPGGSLYSMTDDSN 185
Query: 786 XXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVKGQGKVHAKW 965
QDT+ + I P Y DI++AKLRPGQAI+LEAHAVKG GK HAKW
Sbjct: 186 KTYTSFSCR----QDTI----QNDIAPRYKDILLAKLRPGQAIELEAHAVKGIGKTHAKW 237
Query: 966 SPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKKAKVARPRDCTLCR 1145
SPVATA YRMLPEV LLEEIE AE+LV +CP+KVFDIED+ G K+A+VA PR CTLCR
Sbjct: 238 SPVATAAYRMLPEVVLLEEIEDELAEELVQKCPMKVFDIEDIMGGKRARVAAPRSCTLCR 297
Query: 1146 ECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCERILAELS 1313
ECIRGDDWEKRVQLRRVK+HFIFT+ESTGALPPEVLFTEAVKIL KC+RI ELS
Sbjct: 298 ECIRGDDWEKRVQLRRVKDHFIFTVESTGALPPEVLFTEAVKILSAKCQRIYNELS 353
>ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis] gi|223538024|gb|EEF39637.1| DNA-directed RNA
polymerase I/III subunits, putative [Ricinus communis]
Length = 374
Score = 470 bits (1210), Expect = e-130
Identities = 240/372 (64%), Positives = 284/372 (76%), Gaps = 1/372 (0%)
Frame = +3
Query: 201 KKPMAMDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEF 380
KK D+ DVP G+LPPHL+LQRTRVVC SDAPIHT+ + YSGAYA+ GVDNSL+L F
Sbjct: 12 KKFSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCF 71
Query: 381 CKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEV 560
NF++EV L + +EFDM+GIDA+IANAFRRIL++E+PTMAIEKVLI NNTS+IQDEV
Sbjct: 72 RDNFKVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEV 131
Query: 561 LAHRLGLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLK 740
LAHRLGLIPI DPRLFEY S D NEKNTIVFKL+ C + + +T V +++LK
Sbjct: 132 LAHRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCKRGEPRRT-----VYSEELK 186
Query: 741 WMPNGSEYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDL 920
W+P GS+ K QD +P +P+ P+ II+AKL PGQ I+L
Sbjct: 187 WLPGGSQLLKESEKADSKPSTYTSFTDKQDFIP----KPVSPSEDKIIVAKLGPGQEIEL 242
Query: 921 EAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-G 1097
EAHAVKG GK HAKWSPVATA YRMLPEV LLE+IE AE+L +CPV VFDIED+ G
Sbjct: 243 EAHAVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCPVNVFDIEDIGNG 302
Query: 1098 KKKAKVARPRDCTLCRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKIL 1277
KK+A VARPR CTLCRECIRG +W+KRV LRRVK+HFIFTIESTGALPPEVLFTEAVK+L
Sbjct: 303 KKRATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVL 362
Query: 1278 EEKCERILAELS 1313
E+KCER++ ELS
Sbjct: 363 EDKCERVITELS 374
>ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 469 bits (1208), Expect = e-130
Identities = 248/384 (64%), Positives = 292/384 (76%), Gaps = 9/384 (2%)
Frame = +3
Query: 189 MSSKKKPMAMD----MDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVD 356
MS + + +D +D+VP KLPPHLEL +TRV+C +DAP+HT+ VQYSGAYA GVD
Sbjct: 11 MSEQSNELGLDFILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVD 69
Query: 357 NSLRLSEFCKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNN 536
NS+RL FC+NF++EV L D +EFDM+GID +IANAFRRIL+AEVPTMAIE+V I NN
Sbjct: 70 NSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANN 129
Query: 537 TSVIQDEVLAHRLGLIPIKVDPRLFEY-KSDGDPANEKNTIVFKLNVKCTKDKDGKTWIN 713
TSV+QDEVL+HRLGLIPI+ DPRLFEY ++ GD NEKNTIVFKL+V+C + T
Sbjct: 130 TSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRIT--- 186
Query: 714 SMVKTDQLKWMPNGSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIII 887
VK+D+LKW+PNGSE E QD+LP + I TYSDII+
Sbjct: 187 --VKSDKLKWLPNGSELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIIL 244
Query: 888 AKLRPGQAIDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPV 1067
AKL PGQ I+LEAHAVKG GK HAKWSPVATA YRMLPEV LLE +E AE+L +CPV
Sbjct: 245 AKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPV 304
Query: 1068 KVFDIEDVA-GKKKAKVARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALP 1241
VFDIED+ GK++AKVARPRDCTLCRECIR G +WE RV LRRVK HFIFTIESTGALP
Sbjct: 305 NVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALP 364
Query: 1242 PEVLFTEAVKILEEKCERILAELS 1313
PEVLFTEAVKILE+KCER++ ELS
Sbjct: 365 PEVLFTEAVKILEDKCERVITELS 388
>ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Glycine max]
Length = 393
Score = 469 bits (1207), Expect = e-129
Identities = 246/384 (64%), Positives = 292/384 (76%), Gaps = 9/384 (2%)
Frame = +3
Query: 189 MSSKKKPMAMD----MDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVD 356
MS + + +D +D+VP KLPPHLEL +TRV+C +DAP+HT+ VQYSGAYA GVD
Sbjct: 16 MSEQSNELGLDFILSLDNVPS-KLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAIMGVD 74
Query: 357 NSLRLSEFCKNFRIEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNN 536
NS+RL FC+NF++EV L D +EFDM+GID +IANAFRRIL+AEVPTMAIE+V I NN
Sbjct: 75 NSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANN 134
Query: 537 TSVIQDEVLAHRLGLIPIKVDPRLFEY-KSDGDPANEKNTIVFKLNVKCTKDKDGKTWIN 713
TSV+QDEVL+HRLGLIPI+ DPRLFEY ++ GD NEKNTIVFKL+V+C + T
Sbjct: 135 TSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRIT--- 191
Query: 714 SMVKTDQLKWMPNGSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIII 887
VK+D+LKW+PNGSE E QD+LP + I TYSDII+
Sbjct: 192 --VKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIIL 249
Query: 888 AKLRPGQAIDLEAHAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPV 1067
AKL PGQ I+LEAHAVKG GK HAKWSPVAT YRMLPEV LL+++E AE+L +CPV
Sbjct: 250 AKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKNKCPV 309
Query: 1068 KVFDIEDVA-GKKKAKVARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALP 1241
VFDIED+ GK++AKVARPRDCTLCRECIR G +WE RV LRRVK HFIFTIESTGALP
Sbjct: 310 NVFDIEDIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALP 369
Query: 1242 PEVLFTEAVKILEEKCERILAELS 1313
PEVLFTEAVKILE+KCER++ ELS
Sbjct: 370 PEVLFTEAVKILEDKCERVITELS 393
>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Cucumis sativus] gi|449522768|ref|XP_004168398.1|
PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 462 bits (1189), Expect = e-127
Identities = 240/369 (65%), Positives = 282/369 (76%), Gaps = 3/369 (0%)
Frame = +3
Query: 216 MDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFR 395
M++ DVP KLPPH+ELQRTRV C +DAPIHT+ +QYSGA+A+ G DNSLRL F NF+
Sbjct: 30 MNLPDVPM-KLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGFDNSLRLDNFRNNFK 88
Query: 396 IEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRL 575
IEV L ++ +EFDM+GID ++ANAFRRIL++EVPTMAIEKVL NNTS++QDEVLAHRL
Sbjct: 89 IEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKVLFANNTSIVQDEVLAHRL 148
Query: 576 GLIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNG 755
GL+PI+VDPRLF+Y SD D NE NTIVF+L+ C + K T V + L W+PNG
Sbjct: 149 GLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLT-----VTSKALTWLPNG 202
Query: 756 SEYE--KPXXXXXXXXXXXXXXXXXQDTLPV-IAEEPIRPTYSDIIIAKLRPGQAIDLEA 926
SE+ Q+TL + PI P SDII+A+L PGQ I+LEA
Sbjct: 203 SEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPGQEIELEA 262
Query: 927 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKKK 1106
HAVKG GK HAKWSPVATA YRMLPEV L+EEIE AE+L +CPV VFDIED+AGKK+
Sbjct: 263 HAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELEKKCPVNVFDIEDIAGKKR 322
Query: 1107 AKVARPRDCTLCRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEK 1286
A VARPRDCTLCRECIRGD WEKRV LRRVK+HFIF IESTGALPPEVLFTEAVKILE+K
Sbjct: 323 ATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDK 382
Query: 1287 CERILAELS 1313
CER++AELS
Sbjct: 383 CERLIAELS 391
>gb|EPS59249.1| hypothetical protein M569_15560, partial [Genlisea aurea]
Length = 364
Score = 459 bits (1181), Expect = e-126
Identities = 229/367 (62%), Positives = 281/367 (76%), Gaps = 5/367 (1%)
Frame = +3
Query: 219 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 398
D+ DVP G+LPPHL+LQRTRV+C S+AP +TE +QYSGAYA GVDNSL F +NFR+
Sbjct: 3 DLPDVPGGELPPHLQLQRTRVLCTSEAPTYTENIQYSGAYALMGVDNSLPFDSFRENFRV 62
Query: 399 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 578
E+ ++++ +EFD++GIDA+IANAFRRIL+AE+PTMAIEKVLI NNTSVI DEVL+HRLG
Sbjct: 63 EIVSMDEHDIEFDLIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVIPDEVLSHRLG 122
Query: 579 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 758
LIP+KVDPR F + S+ D NEKNT+VFKL+V C + KT VKTD+LKW+PNGS
Sbjct: 123 LIPLKVDPRPFSFMSEHDEPNEKNTVVFKLHVSCERKGSRKT-----VKTDELKWLPNGS 177
Query: 759 EY----EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEA 926
E E+P QD++P + +RPT +I IA+L PGQ I+LEA
Sbjct: 178 ELRLETERPNINSTSKIQTYTSFNCSQDSMPEFSGSTLRPTSDEITIARLGPGQEIELEA 237
Query: 927 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVAGKK- 1103
HAVKG GK HAKWSPVATA YR+LPE+ALL+EI+ A++LV +CP KVFDIED G
Sbjct: 238 HAVKGMGKTHAKWSPVATAWYRLLPEIALLDEIKNKKAKELVKKCPQKVFDIEDAGGDGI 297
Query: 1104 KAKVARPRDCTLCRECIRGDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEE 1283
+A VARPR+C+LCRECIR ++WEK V +RRVK+HFIF IESTGALPPEVLFTEAVKILEE
Sbjct: 298 RATVARPRNCSLCRECIRDEEWEKLVSVRRVKDHFIFKIESTGALPPEVLFTEAVKILEE 357
Query: 1284 KCERILA 1304
KCE +A
Sbjct: 358 KCENAMA 364
>ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata
subsp. lyrata]
Length = 385
Score = 457 bits (1177), Expect = e-126
Identities = 236/367 (64%), Positives = 278/367 (75%), Gaps = 2/367 (0%)
Frame = +3
Query: 219 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 398
D+ DVP G LPPHLELQRTR VC +DAPIH V YSGAYA+ GVDNS+RL F ++F++
Sbjct: 25 DLPDVPTG-LPPHLELQRTRAVCKNDAPIHPTSVLYSGAYASMGVDNSVRLENFSEDFKV 83
Query: 399 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 578
+V +L + + FDM+G+ A IANAFRRILLAE+P+MAIEKV + NNTSVIQDEVLAHRLG
Sbjct: 84 DVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVANNTSVIQDEVLAHRLG 143
Query: 579 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 758
LIPI DPRLFEY S+ D NEKNTIVFKL+VKC K + V T +LKW+PNGS
Sbjct: 144 LIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCPKGDPRR-----KVLTSELKWLPNGS 198
Query: 759 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 938
E K QD+ P A+ PI P++ DI+IAKL PGQ I+LEAHAVK
Sbjct: 199 ELVKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDILIAKLGPGQEIELEAHAVK 258
Query: 939 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1115
G GK HAKWSPVATA YRMLPEV LL+E EG AE+LV CP KVFDIED+ G+K+A V
Sbjct: 259 GIGKTHAKWSPVATAWYRMLPEVILLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATV 318
Query: 1116 ARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCE 1292
ARPRDC+LCRECIR G +W K+V LRRVK HFIFTIESTG+ PP+VLF EAVKILE+KCE
Sbjct: 319 ARPRDCSLCRECIREGVEWAKQVDLRRVKNHFIFTIESTGSQPPDVLFNEAVKILEDKCE 378
Query: 1293 RILAELS 1313
R+++ELS
Sbjct: 379 RVISELS 385
>ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase
subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit
[Arabidopsis thaliana] gi|2462755|gb|AAB71974.1| RNA
polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit
(isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43
[Arabidopsis thaliana] gi|1586550|prf||2204246B RNA
polymerase
Length = 385
Score = 457 bits (1175), Expect = e-126
Identities = 236/367 (64%), Positives = 277/367 (75%), Gaps = 2/367 (0%)
Frame = +3
Query: 219 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 398
D+ DVP G LPPHLELQRTRVVC D+ IH + +SGAY++ GVDNS+RL F ++F++
Sbjct: 25 DLPDVPTG-LPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFKV 83
Query: 399 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 578
+V +L + + FDM+G+ A IANAFRRILLAE+P+MAIEKV + NNTSVIQDEVLAHRLG
Sbjct: 84 DVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRLG 143
Query: 579 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 758
LIPI DPRLFEY S+ D NEKNTIVFKL+VKC K + V T +LKW+PNGS
Sbjct: 144 LIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRR-----KVLTSELKWLPNGS 198
Query: 759 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 938
E K QD+ P AE PIRPT DI+IAKL PGQ I+LEAHAVK
Sbjct: 199 ELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVK 258
Query: 939 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1115
G GK HAKWSPVATA YRMLPEV LL+E EG AE+LV CP KVFDIED+ G+K+A V
Sbjct: 259 GIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATV 318
Query: 1116 ARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCE 1292
ARPRDC+LCRECIR G +WE +V LRRVK HFIFTIESTG+ PPEVLF EAVKILE+KCE
Sbjct: 319 ARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCE 378
Query: 1293 RILAELS 1313
R+++ELS
Sbjct: 379 RVISELS 385
>ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Cicer arietinum]
Length = 388
Score = 456 bits (1174), Expect = e-126
Identities = 231/371 (62%), Positives = 285/371 (76%), Gaps = 5/371 (1%)
Frame = +3
Query: 216 MDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFR 395
M+++DVP KL PHLEL +TRVVC+ DAP HT+ + YSGAYAA GVDNS+RL FC+NF+
Sbjct: 24 MNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCRNFK 82
Query: 396 IEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRL 575
+EV L D+ +EFDM+GID S+ANAFRRIL+AEVPTMAIE+V I NNTS+IQDEVL+HRL
Sbjct: 83 VEVKKLTDDDIEFDMIGIDPSLANAFRRILIAEVPTMAIERVYIANNTSIIQDEVLSHRL 142
Query: 576 GLIPIKVDPRLFEYKSD-GDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPN 752
GLIPI DP LFEY + G NEKNTIVFKL+V+C K + +VK+D+LKW+PN
Sbjct: 143 GLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRCEKGQP-----RIIVKSDELKWLPN 197
Query: 753 GSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEA 926
GS+ + QD+LP ++ P+ PTY DII+AKL PGQ I+LE
Sbjct: 198 GSDLIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKRPLGPTYPDIILAKLGPGQEIELEV 257
Query: 927 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKK 1103
HAVKG GK HAKWSPVATA YRMLPEV L+E+++ A++LV +CPV VFDIED+ G+K
Sbjct: 258 HAVKGVGKTHAKWSPVATAWYRMLPEVVLMEDVKDELADELVTKCPVNVFDIEDIGKGRK 317
Query: 1104 KAKVARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILE 1280
+A V +PR CTLCRECIR G +WE RV LRRVK+HFIFTIESTGA+PP+VLFT+AVKILE
Sbjct: 318 RATVVKPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPDVLFTQAVKILE 377
Query: 1281 EKCERILAELS 1313
+KCER++ ELS
Sbjct: 378 DKCERVITELS 388
>ref|XP_002300385.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 390
Score = 453 bits (1165), Expect = e-125
Identities = 236/367 (64%), Positives = 274/367 (74%), Gaps = 2/367 (0%)
Frame = +3
Query: 219 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 398
++ DV +G+LPPH+ Q TRV C DAP +TE +QYSG+YA+ GVDNSLRL F +NFRI
Sbjct: 30 NLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASMGVDNSLRLDSFRENFRI 89
Query: 399 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 578
+V L+ + +EFDM+GIDA++ANAFRRIL++EVPTMAIEKV I NNTSVIQDEVLAHRLG
Sbjct: 90 KVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQDEVLAHRLG 149
Query: 579 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 758
LIPIKVDPRLFEY S D NEKNTIV KL+ +C + + V + +LKW+PNGS
Sbjct: 150 LIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQP-----RCSVYSQELKWLPNGS 204
Query: 759 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 938
E+ K QD+LP A PI T DII+AKL PGQ I+LEAHAVK
Sbjct: 205 EFAKESEKPDSKPSTYTSFSCGQDSLPEFAGNPI-STVEDIILAKLGPGQEIELEAHAVK 263
Query: 939 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1115
G GK HAKWSPV TA YRM PEV LLE I+G DAE+L+ +CP VFDIED KKKA V
Sbjct: 264 GMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAIV 323
Query: 1116 ARPRDCTLCRECIRGD-DWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILEEKCE 1292
A R CTLCRECIRGD +WEKRV L RVK+HFIFTIESTGALPPEVLFTEAVKILE KCE
Sbjct: 324 ADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCE 383
Query: 1293 RILAELS 1313
R++ ELS
Sbjct: 384 RVITELS 390
>ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
[Cicer arietinum]
Length = 388
Score = 452 bits (1164), Expect = e-124
Identities = 232/371 (62%), Positives = 283/371 (76%), Gaps = 5/371 (1%)
Frame = +3
Query: 216 MDMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFR 395
M+++DVP KL PHLEL +TRVVC+ DAP HT+ + YSGAYAA GVDNS+RL FC+NF+
Sbjct: 24 MNLEDVPS-KLSPHLELIKTRVVCSIDAPQHTDTINYSGAYAALGVDNSVRLDSFCQNFK 82
Query: 396 IEVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRL 575
+EV L D+ +EFDM+GID S+ANAFRRIL+AEVPTMAIE+V I NNTS+IQDEVL+HRL
Sbjct: 83 VEVKKLTDDDIEFDMIGIDPSLANAFRRILIAEVPTMAIERVYIANNTSIIQDEVLSHRL 142
Query: 576 GLIPIKVDPRLFEYKSD-GDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPN 752
GLIPI DP LFEY + G NEKNTIVFKL+V+C K + T VK+D+LKW+PN
Sbjct: 143 GLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRCEKGQPRIT-----VKSDELKWLPN 197
Query: 753 GSEY--EKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEA 926
GS+ + QD+LP +++P+ PT DII+AKL PGQ I+LE
Sbjct: 198 GSDLIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKKPLGPTNPDIILAKLGPGQEIELEV 257
Query: 927 HAVKGQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKK 1103
HAVKG GK HAKWSPVATA YRMLPEV L E++ A++LV +CPV VFDIED+ G+K
Sbjct: 258 HAVKGVGKTHAKWSPVATAWYRMLPEVVLTEDVTDELADELVTKCPVNVFDIEDIGKGRK 317
Query: 1104 KAKVARPRDCTLCRECIR-GDDWEKRVQLRRVKEHFIFTIESTGALPPEVLFTEAVKILE 1280
+A V +PR CTLCRECIR G +WE RV LRRVK+HFIFTIESTGA+PPEVLFT+AVKILE
Sbjct: 318 RATVVKPRACTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGAIPPEVLFTQAVKILE 377
Query: 1281 EKCERILAELS 1313
+KCER++ ELS
Sbjct: 378 DKCERVITELS 388
>ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutrema salsugineum]
gi|557115433|gb|ESQ55716.1| hypothetical protein
EUTSA_v10025407mg [Eutrema salsugineum]
Length = 394
Score = 445 bits (1144), Expect = e-122
Identities = 237/384 (61%), Positives = 274/384 (71%), Gaps = 19/384 (4%)
Frame = +3
Query: 219 DMDDVPKGKLPPHLELQRTRVVCASDAPIHTEGVQYSGAYAASGVDNSLRLSEFCKNFRI 398
D DVP +LPPHLELQRTRV+C +DAPIHT VQYSGAY GVDNS++L F +NFR+
Sbjct: 17 DHPDVP-ARLPPHLELQRTRVLCKNDAPIHTSSVQYSGAYKFVGVDNSVKLESFSENFRV 75
Query: 399 EVTTLNDETVEFDMVGIDASIANAFRRILLAEVPTMAIEKVLIGNNTSVIQDEVLAHRLG 578
+V + + +EFDM+GIDA+IANAFRRILLAE+PTMAIEKV + NNTSV+QDEVLA R+G
Sbjct: 76 DVISEDGMELEFDMIGIDAAIANAFRRILLAELPTMAIEKVFVANNTSVVQDEVLAQRMG 135
Query: 579 LIPIKVDPRLFEYKSDGDPANEKNTIVFKLNVKCTKDKDGKTWINSMVKTDQLKWMPNGS 758
LIPI DPRLFEY S+ D NEKNTIVFKL+ KC K + V T +L W+PNGS
Sbjct: 136 LIPIAADPRLFEYLSENDQPNEKNTIVFKLHAKCEKGEP-----RLKVLTKELIWLPNGS 190
Query: 759 EYEKPXXXXXXXXXXXXXXXXXQDTLPVIAEEPIRPTYSDIIIAKLRPGQAIDLEAHAVK 938
E K QD+ P A PI P+Y DI+IAKL PGQ I+LEAHAVK
Sbjct: 191 ELIKESGGSTSKPRTYTSFSRSQDSFPEFANNPITPSYPDILIAKLGPGQEIELEAHAVK 250
Query: 939 GQGKVHAKWSPVATARYRMLPEVALLEEIEGIDAEKLVARCPVKVFDIEDVA-GKKKAKV 1115
G GK HAKWSPVATA YRMLPEV LL+E EG DAEKLV C KVFDIED+ G+KKA V
Sbjct: 251 GIGKTHAKWSPVATAWYRMLPEVILLKEFEGEDAEKLVKACAEKVFDIEDMGNGRKKATV 310
Query: 1116 ARPRDCTLCREC-------------IRGDD-----WEKRVQLRRVKEHFIFTIESTGALP 1241
ARPR CTLCREC ++G+D W V LRRVK HFIF IESTG+LP
Sbjct: 311 ARPRQCTLCRECLSEEFGEPIVKPILKGEDKSKREWVDNVALRRVKNHFIFKIESTGSLP 370
Query: 1242 PEVLFTEAVKILEEKCERILAELS 1313
P+VLFTEAVKILE+KCER++A LS
Sbjct: 371 PDVLFTEAVKILEDKCERVIAVLS 394