BLASTX nr result
ID: Ephedra28_contig00004439
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00004439
(540 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABK22548.1| unknown [Picea sitchensis] 128 7e-28
ref|XP_006298953.1| hypothetical protein CARUB_v10015078mg [Caps... 122 7e-26
ref|XP_006409030.1| hypothetical protein EUTSA_v10002049mg [Eutr... 121 1e-25
ref|XP_006409029.1| hypothetical protein EUTSA_v10002049mg [Eutr... 121 1e-25
gb|AAM64943.1| unknown [Arabidopsis thaliana] gi|58761181|gb|AAW... 121 1e-25
ref|NP_565491.1| protein THYLAKOID FORMATION 1 [Arabidopsis thal... 121 1e-25
ref|XP_006841855.1| hypothetical protein AMTR_s00003p00271230 [A... 120 3e-25
ref|XP_004293467.1| PREDICTED: protein THYLAKOID FORMATION1, chl... 120 3e-25
gb|ABV89647.1| chloroplast light-regulated protein [Brassica rapa] 120 3e-25
ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, ch... 119 3e-25
ref|XP_002884230.1| hypothetical protein ARALYDRAFT_900469 [Arab... 118 8e-25
ref|XP_006447402.1| hypothetical protein CICLE_v10016098mg [Citr... 118 1e-24
gb|EOX99296.1| Photosystem II reaction center PSB29 protein [The... 117 2e-24
ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chl... 117 2e-24
ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chl... 117 2e-24
ref|XP_003527468.1| PREDICTED: protein THYLAKOID FORMATION1, chl... 117 2e-24
emb|CBI28372.3| unnamed protein product [Vitis vinifera] 117 2e-24
gb|EMJ16964.1| hypothetical protein PRUPE_ppa009554mg [Prunus pe... 116 3e-24
ref|XP_002985488.1| hypothetical protein SELMODRAFT_122474 [Sela... 116 3e-24
gb|EPS62074.1| hypothetical protein M569_12719, partial [Genlise... 116 4e-24
>gb|ABK22548.1| unknown [Picea sitchensis]
Length = 304
Score = 128 bits (322), Expect = 7e-28
Identities = 80/156 (51%), Positives = 93/156 (59%), Gaps = 8/156 (5%)
Frame = +3
Query: 96 MAGTLASACQSPTLHKHSVCSSHIANANSPSSPI--RLRFRVFP------LQCNVLSRGS 251
MAG LAS C PT + + + PS+ I LR+R L N+ SR
Sbjct: 1 MAGALASVC--PTGFRRLTERTTMLQGIRPSNNIFSSLRWRTITGHDQLLLTVNISSRSL 58
Query: 252 GNPRSVACXXXXXXXXXXXXXXXXXXXXXKSAFLKAYKRPIPSIYNNFIQELIVQQHLMR 431
P++ + KSAFLKAYKRPIPSIYNN IQELIVQQHLMR
Sbjct: 59 --PKASSSLSVTRCSMSITASDIPTVAETKSAFLKAYKRPIPSIYNNVIQELIVQQHLMR 116
Query: 432 YRRTYQYDAVFALGFVTVFDQLMDGYPSEEDREAIF 539
Y+RTYQYDAVFALGFV+V+DQLMDGYPS+ D EAIF
Sbjct: 117 YKRTYQYDAVFALGFVSVYDQLMDGYPSDGDSEAIF 152
>ref|XP_006298953.1| hypothetical protein CARUB_v10015078mg [Capsella rubella]
gi|482567662|gb|EOA31851.1| hypothetical protein
CARUB_v10015078mg [Capsella rubella]
Length = 301
Score = 122 bits (305), Expect = 7e-26
Identities = 73/148 (49%), Positives = 88/148 (59%)
Frame = +3
Query: 96 MAGTLASACQSPTLHKHSVCSSHIANANSPSSPIRLRFRVFPLQCNVLSRGSGNPRSVAC 275
MA T S+ P L + S S+ A + +S IR+ C SR S RS +
Sbjct: 1 MAATAISSLSFPALGQSSDKISNFALSRPLASAIRI--------CTKFSRHSLTYRSTS- 51
Query: 276 XXXXXXXXXXXXXXXXXXXXXKSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYD 455
KS FLKAYKRPIPSIYN +QELIVQQHLMRY+RTY+YD
Sbjct: 52 -RSSIHCMSSVTDDVPPVSETKSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYD 110
Query: 456 AVFALGFVTVFDQLMDGYPSEEDREAIF 539
VFALGFVTV+DQLM+GYPS++DR+AIF
Sbjct: 111 PVFALGFVTVYDQLMEGYPSDQDRDAIF 138
>ref|XP_006409030.1| hypothetical protein EUTSA_v10002049mg [Eutrema salsugineum]
gi|557110186|gb|ESQ50483.1| hypothetical protein
EUTSA_v10002049mg [Eutrema salsugineum]
Length = 306
Score = 121 bits (303), Expect = 1e-25
Identities = 56/67 (83%), Positives = 63/67 (94%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
KS FLKAYKRPIPSIYN +QELIVQQHLMRY+RTY+YD VFALGFVTV+DQLMDGYPS+
Sbjct: 75 KSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSD 134
Query: 519 EDREAIF 539
+DR+AIF
Sbjct: 135 QDRDAIF 141
>ref|XP_006409029.1| hypothetical protein EUTSA_v10002049mg [Eutrema salsugineum]
gi|557110185|gb|ESQ50482.1| hypothetical protein
EUTSA_v10002049mg [Eutrema salsugineum]
Length = 305
Score = 121 bits (303), Expect = 1e-25
Identities = 56/67 (83%), Positives = 63/67 (94%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
KS FLKAYKRPIPSIYN +QELIVQQHLMRY+RTY+YD VFALGFVTV+DQLMDGYPS+
Sbjct: 74 KSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSD 133
Query: 519 EDREAIF 539
+DR+AIF
Sbjct: 134 QDRDAIF 140
>gb|AAM64943.1| unknown [Arabidopsis thaliana] gi|58761181|gb|AAW82331.1|
chloroplast thylakoid formation 1 [Arabidopsis thaliana]
Length = 300
Score = 121 bits (303), Expect = 1e-25
Identities = 74/148 (50%), Positives = 89/148 (60%)
Frame = +3
Query: 96 MAGTLASACQSPTLHKHSVCSSHIANANSPSSPIRLRFRVFPLQCNVLSRGSGNPRSVAC 275
MA T S+ P L + S I+N S S P+ R+ C SR S N RS +
Sbjct: 1 MAATAISSLSFPALGQ----SDKISNFAS-SRPLASAIRI----CTKFSRLSLNSRSTS- 50
Query: 276 XXXXXXXXXXXXXXXXXXXXXKSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYD 455
KS FLKAYKRPIPSIYN +QELIVQQHLMRY++TY+YD
Sbjct: 51 -KSLIHCMSNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYD 109
Query: 456 AVFALGFVTVFDQLMDGYPSEEDREAIF 539
VFALGFVTV+DQLM+GYPS++DR+AIF
Sbjct: 110 PVFALGFVTVYDQLMEGYPSDQDRDAIF 137
>ref|NP_565491.1| protein THYLAKOID FORMATION 1 [Arabidopsis thaliana]
gi|75206547|sp|Q9SKT0.1|THF1_ARATH RecName: Full=Protein
THYLAKOID FORMATION 1, chloroplastic; Flags: Precursor
gi|4454459|gb|AAD20906.1| expressed protein [Arabidopsis
thaliana] gi|17065446|gb|AAL32877.1| Unknown protein
[Arabidopsis thaliana] gi|20148535|gb|AAM10158.1|
unknown protein [Arabidopsis thaliana]
gi|330251998|gb|AEC07092.1| protein THYLAKOID FORMATION
1 [Arabidopsis thaliana]
Length = 300
Score = 121 bits (303), Expect = 1e-25
Identities = 74/148 (50%), Positives = 89/148 (60%)
Frame = +3
Query: 96 MAGTLASACQSPTLHKHSVCSSHIANANSPSSPIRLRFRVFPLQCNVLSRGSGNPRSVAC 275
MA T S+ P L + S I+N S S P+ R+ C SR S N RS +
Sbjct: 1 MAATAISSLSFPALGQ----SDKISNFAS-SRPLASAIRI----CTKFSRLSLNSRSTS- 50
Query: 276 XXXXXXXXXXXXXXXXXXXXXKSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYD 455
KS FLKAYKRPIPSIYN +QELIVQQHLMRY++TY+YD
Sbjct: 51 -KSLIHCMSNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYD 109
Query: 456 AVFALGFVTVFDQLMDGYPSEEDREAIF 539
VFALGFVTV+DQLM+GYPS++DR+AIF
Sbjct: 110 PVFALGFVTVYDQLMEGYPSDQDRDAIF 137
>ref|XP_006841855.1| hypothetical protein AMTR_s00003p00271230 [Amborella trichopoda]
gi|548843876|gb|ERN03530.1| hypothetical protein
AMTR_s00003p00271230 [Amborella trichopoda]
Length = 298
Score = 120 bits (300), Expect = 3e-25
Identities = 65/145 (44%), Positives = 84/145 (57%)
Frame = +3
Query: 105 TLASACQSPTLHKHSVCSSHIANANSPSSPIRLRFRVFPLQCNVLSRGSGNPRSVACXXX 284
+L+ A +P + +C ++N P RLR N S S +P + C
Sbjct: 6 SLSFAAATPASERKGLCRPTLSNNLFNIEPFRLRSTNGSYLVNARSIASYSPSIIRCVSS 65
Query: 285 XXXXXXXXXXXXXXXXXXKSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVF 464
K FL++YKRPIPSIYN +QELIVQQHL+RY+RTYQYDA+
Sbjct: 66 ATDVPTVAET--------KGNFLRSYKRPIPSIYNTVLQELIVQQHLLRYKRTYQYDAIL 117
Query: 465 ALGFVTVFDQLMDGYPSEEDREAIF 539
ALGFVTV+DQLM+G+PS EDR+AIF
Sbjct: 118 ALGFVTVYDQLMEGFPSNEDRDAIF 142
>ref|XP_004293467.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 292
Score = 120 bits (300), Expect = 3e-25
Identities = 55/67 (82%), Positives = 63/67 (94%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLKAYKRPIPS+YN+ +QELIVQQHLMRY+RTY+YD VFALGFVTV+DQLMDGYPS+
Sbjct: 70 KLNFLKAYKRPIPSVYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSD 129
Query: 519 EDREAIF 539
EDR+AIF
Sbjct: 130 EDRDAIF 136
>gb|ABV89647.1| chloroplast light-regulated protein [Brassica rapa]
Length = 273
Score = 120 bits (300), Expect = 3e-25
Identities = 55/67 (82%), Positives = 63/67 (94%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
KS FLKAYKRPIPSIYN +QELIVQQHLMRY+RTY+YD VFALGFVTV+DQLMDGYPS+
Sbjct: 72 KSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSD 131
Query: 519 EDREAIF 539
+DR++IF
Sbjct: 132 QDRDSIF 138
>ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like
[Cucumis sativus] gi|449493105|ref|XP_004159194.1|
PREDICTED: protein THYLAKOID FORMATION 1,
chloroplastic-like [Cucumis sativus]
Length = 298
Score = 119 bits (299), Expect = 3e-25
Identities = 56/67 (83%), Positives = 62/67 (92%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLKAYKRPIPSIYN +QELIVQQHLMRY+RTY+YD VFALGFVTV+DQLM+GYPS+
Sbjct: 75 KLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMEGYPSD 134
Query: 519 EDREAIF 539
EDREAIF
Sbjct: 135 EDREAIF 141
>ref|XP_002884230.1| hypothetical protein ARALYDRAFT_900469 [Arabidopsis lyrata subsp.
lyrata] gi|297330070|gb|EFH60489.1| hypothetical protein
ARALYDRAFT_900469 [Arabidopsis lyrata subsp. lyrata]
Length = 298
Score = 118 bits (296), Expect = 8e-25
Identities = 54/67 (80%), Positives = 63/67 (94%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
KS FLKAYKRPIPSIYN +QELIVQQHLMRY++TY+YD VFALGFVTV+DQLM+GYPS+
Sbjct: 70 KSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSD 129
Query: 519 EDREAIF 539
+DR+AIF
Sbjct: 130 QDRDAIF 136
>ref|XP_006447402.1| hypothetical protein CICLE_v10016098mg [Citrus clementina]
gi|568831117|ref|XP_006469826.1| PREDICTED: protein
THYLAKOID FORMATION1, chloroplastic-like [Citrus
sinensis] gi|557550013|gb|ESR60642.1| hypothetical
protein CICLE_v10016098mg [Citrus clementina]
Length = 299
Score = 118 bits (295), Expect = 1e-24
Identities = 55/67 (82%), Positives = 61/67 (91%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLK YKRPIPSIYN +QELIVQQHLMRY+RTYQYD VFALGFVTV+D+LM+GYPS+
Sbjct: 77 KMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSD 136
Query: 519 EDREAIF 539
EDREAIF
Sbjct: 137 EDREAIF 143
>gb|EOX99296.1| Photosystem II reaction center PSB29 protein [Theobroma cacao]
Length = 298
Score = 117 bits (293), Expect = 2e-24
Identities = 66/115 (57%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Frame = +3
Query: 201 LRFRVFPLQCNVLSRGSGN--PRSVACXXXXXXXXXXXXXXXXXXXXXKSAFLKAYKRPI 374
LRFR L +V RGS + P V C K FLKAYKRPI
Sbjct: 36 LRFRTSVLYHSVGVRGSASASPSVVHCMCAATDVPTVSET--------KLNFLKAYKRPI 87
Query: 375 PSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSEEDREAIF 539
PS+YN +QELIVQQHLMRY+ TY+YDAVFALGFVTV+DQLM+GYPS+EDR+AIF
Sbjct: 88 PSVYNTVLQELIVQQHLMRYKWTYRYDAVFALGFVTVYDQLMEGYPSDEDRDAIF 142
>ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Vitis
vinifera]
Length = 299
Score = 117 bits (293), Expect = 2e-24
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLK YKRPIPSIYN +QEL+VQQHLMRY+RTY+YDAVFALGFVTV+DQLMDGYPS+
Sbjct: 75 KMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGFVTVYDQLMDGYPSD 134
Query: 519 EDREAIF 539
EDR+ IF
Sbjct: 135 EDRDIIF 141
>ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like isoform
X1 [Glycine max]
Length = 291
Score = 117 bits (293), Expect = 2e-24
Identities = 54/67 (80%), Positives = 63/67 (94%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLKAYKRPIPSIYN +QELIVQQHLMRY+R+Y+YDAVFALGFVTV++QLM+GYPS+
Sbjct: 72 KLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSD 131
Query: 519 EDREAIF 539
EDR+AIF
Sbjct: 132 EDRDAIF 138
>ref|XP_003527468.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like
[Glycine max]
Length = 291
Score = 117 bits (293), Expect = 2e-24
Identities = 54/67 (80%), Positives = 63/67 (94%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLKAYKRPIPSIYN +QELIVQQHLMRY+R+Y+YDAVFALGFVTV++QLM+GYPS+
Sbjct: 72 KLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSD 131
Query: 519 EDREAIF 539
EDR+AIF
Sbjct: 132 EDRDAIF 138
>emb|CBI28372.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 117 bits (293), Expect = 2e-24
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLK YKRPIPSIYN +QEL+VQQHLMRY+RTY+YDAVFALGFVTV+DQLMDGYPS+
Sbjct: 19 KMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGFVTVYDQLMDGYPSD 78
Query: 519 EDREAIF 539
EDR+ IF
Sbjct: 79 EDRDIIF 85
>gb|EMJ16964.1| hypothetical protein PRUPE_ppa009554mg [Prunus persica]
Length = 287
Score = 116 bits (291), Expect = 3e-24
Identities = 53/67 (79%), Positives = 62/67 (92%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
K FLKAYKRPIPS+YN +QELIVQQHL++Y+++Y+YD VFALGFVTVFDQLMDGYPS+
Sbjct: 75 KLNFLKAYKRPIPSVYNTVLQELIVQQHLIKYKKSYRYDPVFALGFVTVFDQLMDGYPSD 134
Query: 519 EDREAIF 539
EDREAIF
Sbjct: 135 EDREAIF 141
>ref|XP_002985488.1| hypothetical protein SELMODRAFT_122474 [Selaginella moellendorffii]
gi|302810785|ref|XP_002987083.1| hypothetical protein
SELMODRAFT_125247 [Selaginella moellendorffii]
gi|300145248|gb|EFJ11926.1| hypothetical protein
SELMODRAFT_125247 [Selaginella moellendorffii]
gi|300146694|gb|EFJ13362.1| hypothetical protein
SELMODRAFT_122474 [Selaginella moellendorffii]
Length = 206
Score = 116 bits (291), Expect = 3e-24
Identities = 53/67 (79%), Positives = 62/67 (92%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
KSAFLKA+++PIPSIYNN +QEL+VQQHLMRY TY+YDAVFALGFVTV+DQLMDGYP+
Sbjct: 9 KSAFLKAFRKPIPSIYNNVLQELLVQQHLMRYNATYKYDAVFALGFVTVYDQLMDGYPNA 68
Query: 519 EDREAIF 539
+D EAIF
Sbjct: 69 QDSEAIF 75
>gb|EPS62074.1| hypothetical protein M569_12719, partial [Genlisea aurea]
Length = 226
Score = 116 bits (290), Expect = 4e-24
Identities = 54/67 (80%), Positives = 61/67 (91%)
Frame = +3
Query: 339 KSAFLKAYKRPIPSIYNNFIQELIVQQHLMRYRRTYQYDAVFALGFVTVFDQLMDGYPSE 518
KS FLKAYK PIPSIYN +QELIVQQHLMRY+++YQYD VFALGFVTV+DQLM+GYPS
Sbjct: 26 KSNFLKAYKTPIPSIYNTVLQELIVQQHLMRYKKSYQYDPVFALGFVTVYDQLMEGYPSA 85
Query: 519 EDREAIF 539
EDR+AIF
Sbjct: 86 EDRDAIF 92