BLASTX nr result
ID: Ephedra28_contig00004036
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00004036
(2070 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI33123.3| unnamed protein product [Vitis vinifera] 473 e-130
ref|XP_002262798.2| PREDICTED: transcription initiation factor I... 468 e-129
ref|XP_006467340.1| PREDICTED: transcription initiation factor I... 468 e-129
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr... 466 e-128
ref|XP_004250258.1| PREDICTED: transcription initiation factor I... 457 e-125
ref|XP_006352367.1| PREDICTED: transcription initiation factor I... 454 e-125
ref|XP_006352364.1| PREDICTED: transcription initiation factor I... 454 e-125
ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [A... 452 e-124
ref|XP_002322538.2| transcription initiation factor IIF alpha su... 448 e-123
gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus... 446 e-122
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|... 444 e-122
gb|EOY28869.1| Transcription activators,DNA binding,RNA polymera... 439 e-120
gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus... 438 e-120
ref|XP_002308775.1| transcription initiation factor IIF alpha su... 438 e-120
ref|XP_006586768.1| PREDICTED: transcription initiation factor I... 437 e-119
ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Popu... 431 e-118
ref|XP_004486214.1| PREDICTED: transcription initiation factor I... 421 e-115
ref|XP_004983299.1| PREDICTED: transcription initiation factor I... 408 e-111
ref|XP_004983298.1| PREDICTED: transcription initiation factor I... 405 e-110
gb|AAX95773.1| putative transcription initiation factor [Oryza s... 403 e-109
>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 473 bits (1217), Expect = e-130
Identities = 258/544 (47%), Positives = 330/544 (60%), Gaps = 5/544 (0%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL+LK +CSGCG+++DLYGS+CKHMTLCL+CG +MAE C DCG P+ +LIREYN
Sbjct: 1 MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ ++ DK++FIGRFV GLP FSKK N+D+KW+L +EGL+GRQ+++ LR+KYKNKP LL
Sbjct: 61 VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLLMM GKEFVAIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKP--XXXXXXXXXXXXXXXXXXXXXX 848
+ RR+ A+GYQRW+MK A +G AAFGEVEK ++ +
Sbjct: 181 KNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSD 240
Query: 849 XXXXXXXXXXXXXSRLGLTKKS-EEDEDGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEA 1019
+RLGL K+S ++DE+GP ++ HEE+FTDDDEA
Sbjct: 241 KAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEA 300
Query: 1020 VGNDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXX 1199
VGNDPEEREDL PEVPAPPEIKQD+ N
Sbjct: 301 VGNDPEEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDA 360
Query: 1200 XXXXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSG 1379
I LSPVLA ++A ++P SK++KGKRKS
Sbjct: 361 EDDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATASARSTPPTSKSSKGKRKSN 420
Query: 1380 NEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQAT 1559
+D K G KK+KTE + S+ KDE P+ +K K S K+ ++ +
Sbjct: 421 GDDMKTTNGGPPKKVKTENE-----SKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSA 475
Query: 1560 GAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVV 1739
G VTEDE+RA L Q AP++TQ+LVA+FKARLK+ EDK++FA IL++IS+IQKT N VV
Sbjct: 476 GPVTEDEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVV 535
Query: 1740 LREK 1751
LR+K
Sbjct: 536 LRDK 539
>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Vitis vinifera]
Length = 534
Score = 468 bits (1204), Expect = e-129
Identities = 255/539 (47%), Positives = 326/539 (60%), Gaps = 5/539 (0%)
Frame = +3
Query: 150 ILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCN 329
+LK +CSGCG+++DLYGS+CKHMTLCL+CG +MAE C DCG P+ +LIREYNVR+ +
Sbjct: 1 MLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNS 60
Query: 330 TTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDIS 509
+ DK++FIGRFV GLP FSKK N+D+KW+L +EGL+GRQ+++ LR+KYKNKP LLED+
Sbjct: 61 SGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETG 120
Query: 510 XXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRK 689
+ATYYLLMM GKEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ RR+
Sbjct: 121 QYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRR 180
Query: 690 NAEGYQRWLMKTAKDGAAAFGEVEKAENVKP--XXXXXXXXXXXXXXXXXXXXXXXXXXX 863
A+GYQRW+MK A +G AAFGEVEK ++ +
Sbjct: 181 TADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEED 240
Query: 864 XXXXXXXXSRLGLTKKS-EEDEDGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDP 1034
+RLGL K+S ++DE+GP ++ HEE+FTDDDEAVGNDP
Sbjct: 241 EEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGNDP 300
Query: 1035 EEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXX 1214
EEREDL PEVPAPPEIKQD+ N
Sbjct: 301 EEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDAEDDDD 360
Query: 1215 XXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTK 1394
I LSPVLA ++A ++P SK++KGKRKS +D K
Sbjct: 361 DEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATASARSTPPTSKSSKGKRKSNGDDMK 420
Query: 1395 PNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTE 1574
G KK+KTE + S+ KDE P+ +K K S K+ ++ + G VTE
Sbjct: 421 TTNGGPPKKVKTENE-----SKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVTE 475
Query: 1575 DEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1751
DE+RA L Q AP++TQ+LVA+FKARLK+ EDK++FA IL++IS+IQKT N VVLR+K
Sbjct: 476 DEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRDK 534
>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X1 [Citrus sinensis]
gi|568825955|ref|XP_006467341.1| PREDICTED: transcription
initiation factor IIF subunit alpha-like isoform X2
[Citrus sinensis]
Length = 538
Score = 468 bits (1203), Expect = e-129
Identities = 262/546 (47%), Positives = 333/546 (60%), Gaps = 7/546 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL+LK CSGCG+ +DLYGS+CKHMTLCL CG +MAE KA C DCG + +LIREYN
Sbjct: 1 MSFDLLLKPQCSGCGSQADLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR N++DK++FIGRFV GLPSFSKK N+++KWTL ++GL+GRQ+T+TLR+KYKNKP +L
Sbjct: 61 VRPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWML 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLL+MH KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ RRK A+GY+RW+MK A +GAAAFGEVEK ++ +
Sbjct: 181 KNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRG 240
Query: 855 XXXXXXXXXXXSRLGLTKKSE-EDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGL K+ E +DE+GP HEE+FTDDDEAVG
Sbjct: 241 EEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
NDPEEREDL PEVPAPPEIKQD+ + +
Sbjct: 301 NDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDD 360
Query: 1206 XXXXXXXXXIALSPVLA--XXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSG 1379
+ SP+LA S A+P+ SK+ KGKRKS
Sbjct: 361 DEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSN 420
Query: 1380 NEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQAT 1559
+D + +GA KK+KTE +TK S+ +DE +++K + P K AS S ST+ A+
Sbjct: 421 GDDARAPSGAPLKKVKTE-NETK----SSARDENVSASKSSAPAKGASSSRTGSTS--AS 473
Query: 1560 GAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANG--NL 1733
G VT +E+RA L Q AP++TQ+LVA+FK RL++ ED+ +FA ILK+IS+IQKT NG N
Sbjct: 474 GPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKT-NGPSNY 532
Query: 1734 VVLREK 1751
VVLREK
Sbjct: 533 VVLREK 538
>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
gi|567915083|ref|XP_006449855.1| hypothetical protein
CICLE_v10014841mg [Citrus clementina]
gi|557552465|gb|ESR63094.1| hypothetical protein
CICLE_v10014841mg [Citrus clementina]
gi|557552466|gb|ESR63095.1| hypothetical protein
CICLE_v10014841mg [Citrus clementina]
Length = 538
Score = 466 bits (1200), Expect = e-128
Identities = 262/546 (47%), Positives = 332/546 (60%), Gaps = 7/546 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL+LK CSGCG+ DLYGS+CKHMTLCL CG +MAE KA C DCG + +LIREYN
Sbjct: 1 MSFDLLLKPQCSGCGSQVDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR N++DK++FIGRFV GLPSFSKK N+++KWTL ++GL+GRQ+T+TLR+KYKNKP +L
Sbjct: 61 VRPSNSSDKNYFIGRFVSGLPSFSKKKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWML 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLL+MH KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQAQYQGHLEGSQSATYYLLVMHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ RRK A+GY+RW+MK A +GAAAFGEVEK ++ +
Sbjct: 181 KNRRKTADGYERWMMKAANNGAAAFGEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRG 240
Query: 855 XXXXXXXXXXXSRLGLTKKSE-EDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGL K+ E +DE+GP HEE+FTDDDEAVG
Sbjct: 241 EEDEDEEAKRKNRLGLNKRGEDDDEEGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVG 300
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
NDPEEREDL PEVPAPPEIKQD+ + +
Sbjct: 301 NDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDD 360
Query: 1206 XXXXXXXXXIALSPVLA--XXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSG 1379
+ SP+LA S A+P+ SK+ KGKRKS
Sbjct: 361 DEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSN 420
Query: 1380 NEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQAT 1559
+D + +GA KK+KTE +TK S+ +DE +++K + P K AS S ST+ A+
Sbjct: 421 GDDARAPSGAPLKKVKTE-NETK----SSARDENVSASKSSAPAKGASSSRTGSTS--AS 473
Query: 1560 GAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANG--NL 1733
G VT +E+RA L Q AP++TQ+LVA+FK RL++ ED+ +FA ILK+IS+IQKT NG N
Sbjct: 474 GPVTAEEIRAVLLQQAPVTTQDLVAKFKPRLRSTEDRTAFADILKRISKIQKT-NGPSNY 532
Query: 1734 VVLREK 1751
VVLREK
Sbjct: 533 VVLREK 538
>ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Solanum lycopersicum]
Length = 534
Score = 457 bits (1175), Expect = e-125
Identities = 261/550 (47%), Positives = 328/550 (59%), Gaps = 11/550 (2%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DLILK +CS CG+SSDLYGSSCKH+TLCL+CG +MAE + C +CG P+ +LIREYN
Sbjct: 1 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+C++ DK+HFI RF GLP FSKK N DSKWTL +EGL+GRQ+T+TLR+KYKNKP LL
Sbjct: 61 VRACSSNDKNHFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 119
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +A YYLLMM G+E AIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 120 EDETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 179
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ RRK A+GYQRW+MK A +G AAFGE+E+ ++ +
Sbjct: 180 KNRRKTADGYQRWMMKAANNGPAAFGELERFDDKEGGSGGTRGRKKTSGDEDEGNASDHG 239
Query: 855 XXXXXXXXXXXSRLGLTKKS-EEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGL K+ ++DE+GP HEE+FTDDDEAVG
Sbjct: 240 DEDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG 299
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
NDPEEREDL PE+PAPPEIKQD+ N
Sbjct: 300 NDPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDEDD 359
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNG-------SKATKG 1364
I SPVLA +++P A+ +G SK+ K
Sbjct: 360 DDDDDTEEDI--SPVLA------PKPKEAPKEEPVETNSPLKAAASGSNRGTPTSKSAKT 411
Query: 1365 KRKSGNEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKST 1544
KRK+ +++KP +GA KK+KTEA D K KDE P+SAK K AS S +K+
Sbjct: 412 KRKANGDESKPTSGAPLKKVKTEA-DAKPG-----KDETPSSAKNTALPKGASSS-SKTA 464
Query: 1545 TSQATGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTAN 1724
S ATG VTEDE+RA L Q P++TQ+LV++FK+RLK EDK +FA +L+KIS+IQKT
Sbjct: 465 PSSATGPVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTT 524
Query: 1725 G-NLVVLREK 1751
G + VVLRE+
Sbjct: 525 GSSYVVLRER 534
>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X4 [Solanum tuberosum]
Length = 535
Score = 454 bits (1167), Expect = e-125
Identities = 258/544 (47%), Positives = 323/544 (59%), Gaps = 5/544 (0%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DLILK +CS CG+SSDLYGSSCKH+TLCL+CG +MAE + C +CG P+ +LIREYN
Sbjct: 1 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+C++ DK+HFI RF GLP FSKK N DSKWTL +EGL+GRQ+T+TLR+KYKNKP LL
Sbjct: 61 VRACSSNDKNHFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 119
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +A YYLLMM G+E AIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 120 EDETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 179
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ RRK A+GYQRW+MK A +G AAFGEVE+ ++ +
Sbjct: 180 KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHG 239
Query: 855 XXXXXXXXXXXSRLGLTKKS-EEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGL K+ ++DE+GP HEE+FTDDDEAVG
Sbjct: 240 DEDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG 299
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
NDPEEREDL PE+PAPPEIKQD+ N
Sbjct: 300 NDPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDAED 359
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAP-TTASPNGSKATKGKRKSGN 1382
+SPVLA +A + SK+ K KRK+
Sbjct: 360 DDDDDDTEE-DISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANG 418
Query: 1383 EDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATG 1562
+++KP +GA KK+KTE D K KDE P+SAK + K AS S +K+ S ATG
Sbjct: 419 DESKPTSGAPLKKVKTET-DAKPG-----KDETPSSAKNSALPKGASSS-SKTAPSPATG 471
Query: 1563 AVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANG-NLVV 1739
VTEDE+RA L Q P++TQ+LV++FK+RLK EDK +FA +L+KIS+IQKT G + VV
Sbjct: 472 PVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVV 531
Query: 1740 LREK 1751
LRE+
Sbjct: 532 LRER 535
>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X1 [Solanum tuberosum]
gi|565371548|ref|XP_006352365.1| PREDICTED: transcription
initiation factor IIF subunit alpha-like isoform X2
[Solanum tuberosum] gi|565371550|ref|XP_006352366.1|
PREDICTED: transcription initiation factor IIF subunit
alpha-like isoform X3 [Solanum tuberosum]
Length = 538
Score = 454 bits (1167), Expect = e-125
Identities = 258/544 (47%), Positives = 323/544 (59%), Gaps = 5/544 (0%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DLILK +CS CG+SSDLYGSSCKH+TLCL+CG +MAE + C +CG P+ +LIREYN
Sbjct: 1 MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+C++ DK+HFI RF GLP FSKK N DSKWTL +EGL+GRQ+T+TLR+KYKNKP LL
Sbjct: 61 VRACSSNDKNHFIARFASGLPKFSKKKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLL 119
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +A YYLLMM G+E AIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 120 EDETGQFQFHGHLEGAQSAQYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKM 179
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ RRK A+GYQRW+MK A +G AAFGEVE+ ++ +
Sbjct: 180 KNRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHG 239
Query: 855 XXXXXXXXXXXSRLGLTKKS-EEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGL K+ ++DE+GP HEE+FTDDDEAVG
Sbjct: 240 DEDEEEEAARKNRLGLNKRGIDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG 299
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
NDPEEREDL PE+PAPPEIKQD+ N
Sbjct: 300 NDPEEREDLAPEIPAPPEIKQDEDDEEEGEEEGGGLSKSGKELKKLLGKANGLNESDAED 359
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAP-TTASPNGSKATKGKRKSGN 1382
+SPVLA +A + SK+ K KRK+
Sbjct: 360 DDDDDDTEE-DISPVLAPKPKEAPKEEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANG 418
Query: 1383 EDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATG 1562
+++KP +GA KK+KTE D K KDE P+SAK + K AS S +K+ S ATG
Sbjct: 419 DESKPTSGAPLKKVKTET-DAKPG-----KDETPSSAKNSALPKGASSS-SKTAPSPATG 471
Query: 1563 AVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANG-NLVV 1739
VTEDE+RA L Q P++TQ+LV++FK+RLK EDK +FA +L+KIS+IQKT G + VV
Sbjct: 472 PVTEDEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVV 531
Query: 1740 LREK 1751
LRE+
Sbjct: 532 LRER 535
>ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [Amborella trichopoda]
gi|548861791|gb|ERN19162.1| hypothetical protein
AMTR_s00061p00167160 [Amborella trichopoda]
Length = 558
Score = 452 bits (1162), Expect = e-124
Identities = 258/554 (46%), Positives = 321/554 (57%), Gaps = 11/554 (1%)
Frame = +3
Query: 123 GNSTISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLI 302
G T+S DL+LKS+C GCG++SDLYGS+CKH+TLC +CG +MAE ++ C +CG PI +LI
Sbjct: 8 GFRTMSGDLVLKSSCVGCGSNSDLYGSNCKHLTLCQSCGKTMAETRSKCYECGTPITRLI 67
Query: 303 REYNVRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNK 482
REYNVR+ TDK+++I RFV GLP FS+K N D KWTL +EGL+GRQ+TE+LR+K+KNK
Sbjct: 68 REYNVRANVNTDKTYYISRFVMGLPGFSRKKNGDVKWTLQKEGLQGRQVTESLREKFKNK 127
Query: 483 PLLLEDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEA 662
P LLED+ +ATYYLL GKEFVAIPAG WY FNKVAQYKQLTLEEA
Sbjct: 128 PWLLEDETGQHQYHGQLEGAQSATYYLLTNQGKEFVAIPAGSWYNFNKVAQYKQLTLEEA 187
Query: 663 EEKMRTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENV--KPXXXXXXXXXXXXXXXXXX 836
EEKM+ RRKNAEGY+RW+MK A +GA+AF ++EK +
Sbjct: 188 EEKMKNRRKNAEGYERWIMKAANNGASAFRDMEKIDGSGGNGGASGGRRRKGSGDEDDDA 247
Query: 837 XXXXXXXXXXXXXXXXXSRLGLTKKSEEDEDGPA----NNXXXXXXXXXXXXXXHEEVFT 1004
+RLGL KK+ +DE ++ HEE+FT
Sbjct: 248 VRSDREGEDDDDEEARKNRLGLNKKTFDDEGEEVPRGDDHDFDDDDIEKGDDWEHEEIFT 307
Query: 1005 DDDEAVGNDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSA 1184
DDDEAVGNDPEERED PEVPAPPEIKQDD
Sbjct: 308 DDDEAVGNDPEEREDFAPEVPAPPEIKQDDEDEDEGNEDEEGGLSKSGRELKKLLGRAGG 367
Query: 1185 --NXXXXXXXXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKAT 1358
+ S VLA +S +P+ SK+T
Sbjct: 368 LNESDGDDDDDDDDLDDDMGTSSVLAPKQKEVKEEPVDNSPTKTATSGSNRGTPSTSKST 427
Query: 1359 KGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNK 1538
K KRKSG++D KP A +KK K E D+K ++ VKDE ++ + N P K S S K
Sbjct: 428 KAKRKSGSDDAKPAASAPSKKPKIE-NDSK--PATTVKDEPASAQRSNTPVKLPSSSGTK 484
Query: 1539 STTSQATGA--VTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQ 1712
S A VTEDE+RA L Q+AP++TQ+LV +FKARL+ EDK SFAA+LKKISRIQ
Sbjct: 485 PAGSPVAAAVPVTEDEIRAVLLQMAPVTTQDLVGKFKARLRTKEDKDSFAAVLKKISRIQ 544
Query: 1713 KTANG-NLVVLREK 1751
KT G N VVLR+K
Sbjct: 545 KTNGGANFVVLRDK 558
>ref|XP_002322538.2| transcription initiation factor IIF alpha subunit family protein
[Populus trichocarpa] gi|550320589|gb|EEF04299.2|
transcription initiation factor IIF alpha subunit family
protein [Populus trichocarpa]
Length = 540
Score = 448 bits (1152), Expect = e-123
Identities = 256/549 (46%), Positives = 325/549 (59%), Gaps = 10/549 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL+LK +CSGCG+++DLYGS+CKHMTLCLNCG +MAE + C DCG + +LIREYN
Sbjct: 1 MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ ++DK++FIGRFV GLPSFSKK N+++KW+L +EG+ GRQIT+ LR+K+KNKP LL
Sbjct: 61 VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQW--YTFNKVAQYKQLTLEEAEE 668
ED+ +ATYYLLMM GKEFVAIPAG W Y FNKVA YKQLTLEEAEE
Sbjct: 121 EDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEE 180
Query: 669 KMRTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVK-PXXXXXXXXXXXXXXXXXXXXX 845
KM+ RRK A+GY+RW+MK A +GAAAFGEVEK ++ +
Sbjct: 181 KMKNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVS 240
Query: 846 XXXXXXXXXXXXXXSRLGLTKK-SEEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDE 1016
SRLGL K+ ++DE+GP HEE+FTDDDE
Sbjct: 241 DRGEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300
Query: 1017 AVGNDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXX 1196
AV DPEEREDL PEVPAPPEIKQD+ AN
Sbjct: 301 AVAIDPEEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLG----KANGLN 356
Query: 1197 XXXXXXXXXXXXI--ALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTA--SPNGSKATKG 1364
+ +SPVLA + +A +P+ SK+ KG
Sbjct: 357 ESDVEDDDDDEDMDDDISPVLAPKQKDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAKG 416
Query: 1365 KRKSGNEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKST 1544
KRK ED K + GA KK+KTE + AVK+E + KG K S +
Sbjct: 417 KRKLNGEDAKSSNGAPVKKVKTENE-----VKPAVKEESSPATKGTATPKVTPPSSKTGS 471
Query: 1545 TSQATGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTAN 1724
TS +TG VTE+E+RA L Q P++TQ+LVARFK+RL+ PEDK++FA IL++IS+IQKT+
Sbjct: 472 TSGSTGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSG 531
Query: 1725 GNLVVLREK 1751
N VVLR+K
Sbjct: 532 SNYVVLRDK 540
>gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus vulgaris]
Length = 540
Score = 446 bits (1146), Expect = e-122
Identities = 251/547 (45%), Positives = 327/547 (59%), Gaps = 8/547 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL LKS+CSGCG+++DLYGS+CKHMTLCL+CG +MAE +A C DCG+ + +LIREYN
Sbjct: 1 MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENRAKCVDCGVTLTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ +T DK++FIGRF+ GLP FSKK ++++KW L +EGL GRQIT+TLR+KYKNKP LL
Sbjct: 61 VRASSTNDKNYFIGRFMTGLPDFSKKKSAENKWALQKEGLLGRQITDTLREKYKNKPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLLM KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQSQYQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ R+K A+GYQRW+MK A +G AAFG+ K + K
Sbjct: 181 KNRKKTADGYQRWMMKAANNGPAAFGDHGKFDE-KESNTGGGRSRKKTGEEEEGHVSDKG 239
Query: 855 XXXXXXXXXXXSRLGLTKK-SEEDEDGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGL K+ +++DE+GP ++ HEE+FTDDDEAVG
Sbjct: 240 EEDEDDESERKNRLGLYKRPADDDEEGPRGGDHDLEDDDVEKGDDWEHEEIFTDDDEAVG 299
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAN--XXXX 1199
NDPEEREDL PEVPAPPEIKQD+ N
Sbjct: 300 NDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGGGLSKSGKELKKLLGKASGLNESDAED 359
Query: 1200 XXXXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSG 1379
+ PV+A ++ SK++KGKRKS
Sbjct: 360 EDDDDDDMDDEVGNPPVIATKTKDAPKEEPVDNSPSKPTATGPARGTPSSKSSKGKRKS- 418
Query: 1380 NEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTK--PASQSPNKSTTSQ 1553
NE+ KP A KK+K E + S+ KD +++K N P K P S S +++
Sbjct: 419 NEEVKPTNTATPKKVKQENEP-----KSSAKDVNGSASKSNAPPKGTPPSSSSKPGSSAT 473
Query: 1554 ATGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANG-N 1730
A+G V+E+E+RA L+Q P++TQ+LVA+FKARL++ EDKQ+FA ILK+IS+IQKTANG +
Sbjct: 474 ASGPVSEEEIRAVLRQKTPVTTQDLVAKFKARLRSSEDKQAFAEILKRISKIQKTANGSS 533
Query: 1731 LVVLREK 1751
V+LR+K
Sbjct: 534 YVILRDK 540
>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1|
tfiif-alpha, putative [Ricinus communis]
Length = 533
Score = 444 bits (1141), Expect = e-122
Identities = 245/539 (45%), Positives = 324/539 (60%), Gaps = 3/539 (0%)
Frame = +3
Query: 144 DLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRS 323
DL+LK +CSGCG+++DLYGS+CKHMTLCL+CG +MAE A C DCG + +LIREYNVR+
Sbjct: 5 DLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNVRA 64
Query: 324 CNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDD 503
+++DK++FIGRFV GLPSFSKK N+++KW+L +EGL+GRQ+T+ LR+KYKN+P LLED+
Sbjct: 65 SSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLEDE 124
Query: 504 ISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTR 683
+ATYYLL++ GKEFVAIPA WY FNKVAQYKQLTLEEAEEKMR R
Sbjct: 125 TGQFQYQGHLEGSQSATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMRNR 184
Query: 684 RKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXX 863
RK A+GY+RW+MK A +G AAFGEVEK ++
Sbjct: 185 RKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRGDED 244
Query: 864 XXXXXXXXSRLGLTKK-SEEDEDGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDP 1034
+RLGL K+ ++DE+GP ++ HEE+FTDDDEAVGND
Sbjct: 245 EEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAVGNDR 304
Query: 1035 EEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXX 1214
EEREDL PEVPAPPEIKQD+ +
Sbjct: 305 EEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGRAGGLNDSDAEDDDDD 364
Query: 1215 XXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTK 1394
+++SPVLA +SA + +P+ SK+ KGKRK +++ K
Sbjct: 365 DDMDEDVSISPVLA-PKQTPKEEPADNSPAKPMTSASSKGTPSTSKSAKGKRKLNSDEAK 423
Query: 1395 PNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTE 1574
A KK+KTE + VK+E ++K + K A S +TS VTE
Sbjct: 424 QTNVAPQKKVKTENE-----LKPTVKEESAPTSKSSATPKAAPPSAKTGSTS----PVTE 474
Query: 1575 DEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1751
+E+RA L Q P++TQ+LVARFK+RLK+ EDK++FA IL++IS+IQKT+ + VVLR+K
Sbjct: 475 EEIRAVLLQNGPVTTQDLVARFKSRLKSSEDKKAFADILRRISKIQKTSGSSYVVLRDK 533
>gb|EOY28869.1| Transcription activators,DNA binding,RNA polymerase II transcription
factors,catalytics,transcription initiation factors
isoform 1 [Theobroma cacao]
Length = 549
Score = 439 bits (1130), Expect = e-120
Identities = 254/558 (45%), Positives = 328/558 (58%), Gaps = 19/558 (3%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL+LKS+CSGCG++ DLYGS+CKHMTLC+ CG +MAE + C +CG + +LIREYN
Sbjct: 1 MSFDLMLKSSCSGCGSTVDLYGSNCKHMTLCVTCGKTMAENQGKCFECGAIVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR +TDK+ FIGRF+ GLPSFSKK N+++KW+L +EGL+GRQ+T+ LR+KYKNKP +L
Sbjct: 61 VRPSPSTDKNFFIGRFMSGLPSFSKKKNAENKWSLQKEGLQGRQLTDPLREKYKNKPWML 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLLMM GKEFVAIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQAQYQGHLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ RRK A+GY+RW+MK A +GAAAFGEVEK ++
Sbjct: 181 KNRRKTADGYERWMMKAANNGAAAFGEVEKFDDKDNSVAGGKGRKKPTGDDDEGHVSDRG 240
Query: 855 XXXXXXXXXXXSRLGLTKK-SEEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGL KK ++DE+GP HEE+FTDDDEAVG
Sbjct: 241 EEDEEEEAARKNRLGLDKKGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVG 300
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
N+PEER DL PEVPAPPEIK+D+ N
Sbjct: 301 NEPEER-DLAPEVPAPPEIKEDEDEEDEEQEGGLSKSGKELKKLLGKAG--GLNDSDADD 357
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSS-APTTASPNGSKATKGKRKSGN 1382
++ +P A +S A + SK+ KGKRK+
Sbjct: 358 DDDDDDDDDMSFNPAPASKQKDAPKEEPADNSPMKPASSASARGTSTASKSAKGKRKANG 417
Query: 1383 EDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQA-- 1556
+DTK + G KK+K+E D+K S+VK+E +++KG+ P K S +TS A
Sbjct: 418 DDTKASNGTPLKKVKSET-DSK----SSVKEESASASKGSVPPKGTPSSAKAGSTSSAVT 472
Query: 1557 -----------TGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKIS 1703
G VTE+E+RA L Q AP++T +LVA+FKARLK+PEDK++FA IL++IS
Sbjct: 473 SSSAKAGSASTAGPVTEEEIRAVLLQKAPVTTSDLVAKFKARLKSPEDKKAFADILRRIS 532
Query: 1704 RIQKTANG--NLVVLREK 1751
+IQKT NG N VVLR+K
Sbjct: 533 KIQKT-NGPNNYVVLRDK 549
>gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus vulgaris]
Length = 540
Score = 438 bits (1127), Expect = e-120
Identities = 246/546 (45%), Positives = 318/546 (58%), Gaps = 7/546 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL+LK TC GCG+++DLYGS+CKHMTLCL CG +MAE KA C DCG + +LIREY+
Sbjct: 1 MSIDLLLKPTCGGCGSTTDLYGSNCKHMTLCLTCGKTMAENKAKCFDCGATVTRLIREYS 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ + +DK +FIGRFV GLP FSKK ++++KW+L +EGL+ RQ+T+ LR+KYKNKP LL
Sbjct: 61 VRASSGSDKHYFIGRFVSGLPDFSKKKSAENKWSLQKEGLQSRQVTDALREKYKNKPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLLMM KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQSQFQGHLEGAQSATYYLLMMERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ R+K A+GY+RW+MK A +G AAFGE + + +
Sbjct: 181 KNRKKTADGYERWMMKAANNGPAAFGERGRFDEKESNVGGGGKNRKKTDEDEEGHVSDKG 240
Query: 855 XXXXXXXXXXXSRLGLTKK-SEEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
SRLGL KK ++DE+GP HEE+FTDDDEAVG
Sbjct: 241 EEDEDDEVARRSRLGLNKKGGDDDEEGPRGGDLDQDDDDIEKGDDWEHEEIFTDDDEAVG 300
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
NDPEEREDL PEVPAPPEIKQDD
Sbjct: 301 NDPEEREDLAPEVPAPPEIKQDDEDEDEDNEEGGGLSKSGKELKKLLRTSGLNESDAEDD 360
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTT-ASPNGSKATKGKRKSGN 1382
+ PV+A + T + + SK +KGKRK N
Sbjct: 361 DDDDDVDDEAGVPPVIASKPKDAPKEEPADNSPSKPAVTGTARGTLSTSKPSKGKRKL-N 419
Query: 1383 EDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTK---PASQSPNKSTTSQ 1553
E+TK GA KK+K E + S VKDE +++K N P+K P S S++
Sbjct: 420 EETKAANGAPPKKVKIENEP-----KSTVKDENGSTSKNNTPSKGVPPTPSSKGGSSSPI 474
Query: 1554 ATGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNL 1733
A+G V+E+E+RA L Q P++TQ+LVA+F+ARL+ PEDK++FA ILK+IS+IQKT +
Sbjct: 475 ASGPVSEEEIRAVLMQKTPLTTQDLVAKFRARLRCPEDKKAFADILKRISKIQKTNASSY 534
Query: 1734 VVLREK 1751
V+LR++
Sbjct: 535 VILRDR 540
>ref|XP_002308775.1| transcription initiation factor IIF alpha subunit family protein
[Populus trichocarpa] gi|222854751|gb|EEE92298.1|
transcription initiation factor IIF alpha subunit family
protein [Populus trichocarpa]
Length = 541
Score = 438 bits (1127), Expect = e-120
Identities = 252/549 (45%), Positives = 320/549 (58%), Gaps = 10/549 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL L+ +CSGCG+++DLYGS+CKHMTLCL CG +MAE + C DCG + +LIREYN
Sbjct: 1 MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ +++K++FIGRFV GLP FSKK N+++KW+L++EG+ GRQIT+TLR+K+KNKP LL
Sbjct: 61 VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQW--YTFNKVAQYKQLTLEEAEE 668
ED+ +ATYYLLMM GKEFVAIPAG W Y FNKVA YKQLTLEEAEE
Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEE 180
Query: 669 KMRTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVK-PXXXXXXXXXXXXXXXXXXXXX 845
KM+ RRK A+GY+RW+MK A +GAAAFGEVEK ++
Sbjct: 181 KMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVS 240
Query: 846 XXXXXXXXXXXXXXSRLGLTK-KSEEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDE 1016
SRLGL K ++DE+GP HEE+FTDDDE
Sbjct: 241 DKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300
Query: 1017 AVGNDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXX 1196
AV DPEEREDL PEVPAPPEIKQD+ AN
Sbjct: 301 AVAIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLG----KANGLN 356
Query: 1197 XXXXXXXXXXXXI--ALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTA--SPNGSKATKG 1364
+ +SPVLA + P +A +P+ SK+ KG
Sbjct: 357 ESDAEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKG 416
Query: 1365 KRKSGNEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKST 1544
KRK +D K + GA KK+KTE + VK+E + KG K S
Sbjct: 417 KRKLNADDAKTSNGAPVKKVKTENE-----VKPTVKEESSPATKGTATPKIMPSSSKTGP 471
Query: 1545 TSQATGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTAN 1724
TS TG VTE+E+RA L Q P++TQ+LVARFK+RL+ PEDK++FA IL++IS+IQKT+
Sbjct: 472 TSGPTGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSG 531
Query: 1725 GNLVVLREK 1751
N VVLR+K
Sbjct: 532 SNFVVLRDK 540
>ref|XP_006586768.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Glycine max]
Length = 536
Score = 437 bits (1123), Expect = e-119
Identities = 251/546 (45%), Positives = 322/546 (58%), Gaps = 7/546 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL LKS+CSGCG+++DLYGS+CKHMTLCL CG +MA +A C DCG + +LIREYN
Sbjct: 1 MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ + DK++FIGRF+ GLP FSKK ++++KW+L ++GL GRQIT+TLR+KYKNKP LL
Sbjct: 61 VRASSPNDKNYFIGRFINGLPDFSKKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLLM KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQSQFQGHLEGSQSATYYLLMKERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ R+K A+GYQRW+MK A +G AAFGE K ++
Sbjct: 181 KNRKKTADGYQRWMMKAANNGPAAFGEHGKFDD-NESNTGGGRSHKKTDEDDEGHVSDKG 239
Query: 855 XXXXXXXXXXXSRLGLTKKS-EEDEDGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
SRLGL K++ E+DE+GP ++ HEE+FTDDDEAVG
Sbjct: 240 EEDEEEESERKSRLGLNKRAGEDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVG 299
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAN--XXXX 1199
NDPEEREDL PEVPAPPEIKQD+ N
Sbjct: 300 NDPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGEGLSKSGKELKKLLGKASGLNESDAED 359
Query: 1200 XXXXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSG 1379
+ + PV+A ++ SK++KGKRK
Sbjct: 360 DDDDDDDVDDDVGVPPVIATKQKDALKEEPIDNSPSKPTATGPARGTPSSKSSKGKRKL- 418
Query: 1380 NEDTKP-NTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQA 1556
NE+TKP NT K+ K A+D V+GS++ P KG T P S STT+ A
Sbjct: 419 NEETKPSNTATPKKEPKLSAKD--VNGSASKSSAPP---KG---TPPLSSKGGSSTTTTA 470
Query: 1557 TGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANG-NL 1733
+G V+E+E+RA L+Q P++TQ+LVA+FKARL+ EDKQ+FA ILK+IS+IQKT G +
Sbjct: 471 SGPVSEEEIRAVLRQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTTGASY 530
Query: 1734 VVLREK 1751
V+LR+K
Sbjct: 531 VILRDK 536
>ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa]
gi|550335193|gb|ERP58675.1| hypothetical protein
POPTR_0006s01070g [Populus trichocarpa]
Length = 536
Score = 431 bits (1107), Expect = e-118
Identities = 251/549 (45%), Positives = 318/549 (57%), Gaps = 10/549 (1%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
+S DL L+ +CSGCG+++DLYGS+CKHMTLCL CG +MAE + C DCG + +LIREYN
Sbjct: 1 MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ +++K++FIGRFV GLP FSKK N+++KW+L++EG+ GRQIT+TLR+K+KNKP LL
Sbjct: 61 VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQW--YTFNKVAQYKQLTLEEAEE 668
ED+ +ATYYLLMM GKEFVAIPAG W Y FNKVA YKQLTLEEAEE
Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEE 180
Query: 669 KMRTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVK-PXXXXXXXXXXXXXXXXXXXXX 845
KM+ RRK A+GY+RW+MK A +GAAAFGEVEK ++
Sbjct: 181 KMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVS 240
Query: 846 XXXXXXXXXXXXXXSRLGLTK-KSEEDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDE 1016
SRLGL K ++DE+GP HEE+FTDDDE
Sbjct: 241 DKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDE 300
Query: 1017 AVGNDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXX 1196
AV DPEEREDL PEVPAPPEIKQD+ AN
Sbjct: 301 AVAIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLG----KANGLN 356
Query: 1197 XXXXXXXXXXXXI--ALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTA--SPNGSKATKG 1364
+ +SPVLA + P +A +P+ SK+ KG
Sbjct: 357 ESDAEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKG 416
Query: 1365 KRKSGNEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKST 1544
KRK +D K + GA KK E + T VK+E + KG K S
Sbjct: 417 KRKLNADDAKTSNGAPVKK---EVKPT-------VKEESSPATKGTATPKIMPSSSKTGP 466
Query: 1545 TSQATGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTAN 1724
TS TG VTE+E+RA L Q P++TQ+LVARFK+RL+ PEDK++FA IL++IS+IQKT+
Sbjct: 467 TSGPTGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSG 526
Query: 1725 GNLVVLREK 1751
N VVLR+K
Sbjct: 527 SNFVVLRDK 535
>ref|XP_004486214.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X1 [Cicer arietinum]
Length = 538
Score = 421 bits (1081), Expect = e-115
Identities = 247/548 (45%), Positives = 319/548 (58%), Gaps = 12/548 (2%)
Frame = +3
Query: 135 ISADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYN 314
++ DL LKS CSGC +++DLYGS+CKHMTLCL CG +MAE +A C DCG + +LIREYN
Sbjct: 1 MTMDLQLKSCCSGCRSTTDLYGSNCKHMTLCLTCGKTMAENRAKCYDCGATLTRLIREYN 60
Query: 315 VRSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLL 494
VR+ + DK++FIGRF+ GLP FSKK ++++KW L ++GL+ R++T+ LR+K+KN+P LL
Sbjct: 61 VRASSANDKNYFIGRFMTGLPDFSKKKSAENKWCLQKDGLQRREVTDALREKFKNRPWLL 120
Query: 495 EDDISXXXXXXXXXXXXNATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKM 674
ED+ +ATYYLLM KEFVA PAG WY FNKVAQYKQLTLEEAEEKM
Sbjct: 121 EDETGQSQYQGHLEGSQSATYYLLMKEKKEFVAXPAGSWYNFNKVAQYKQLTLEEAEEKM 180
Query: 675 RTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXX 854
+ R+K A+GYQRW+MK A +G AAFGE K + K
Sbjct: 181 KNRKKTADGYQRWMMKAANNGPAAFGEHGKLDE-KESNTGGGRSRKKTGDDDEGVVSDKG 239
Query: 855 XXXXXXXXXXXSRLGLTKKSEEDED---GP--ANNXXXXXXXXXXXXXXHEEVFTDDDEA 1019
SRLGL KKS D+D GP ++ HEE+FTDDDEA
Sbjct: 240 EEDEDEEVDRKSRLGLNKKSGYDDDEDEGPKGGDSDIDGDDIEKGDDWEHEEIFTDDDEA 299
Query: 1020 VGNDPEEREDLGPEVPAPPEIKQ--DDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXX 1193
VGNDPEEREDL PE+PAPPEIKQ D+ +
Sbjct: 300 VGNDPEEREDLAPEIPAPPEIKQDDDEEDEDNEEEGGLSKSGKELKKLLGRTSGLDESDA 359
Query: 1194 XXXXXXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNG----SKATK 1361
+ + PV A S PTT P SK++K
Sbjct: 360 EDDDDDDDDIDDEVGVPPVTAAKKEPKEEPVDTSP------SKPTTTGPARGTPTSKSSK 413
Query: 1362 GKRKSGNEDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKS 1541
GKRK+ +E+ KPN A TKK+KTE + K SG KD +++K N P+K A P+K+
Sbjct: 414 GKRKA-SEEAKPNI-APTKKVKTE-NEPKSSG----KDVNGSTSKSNAPSKGAPPPPSKA 466
Query: 1542 TTSQA-TGAVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKT 1718
+S A +G VTE+E+R L Q P++TQ+LVA+FKARL+ EDKQ+FA ILK+IS+IQKT
Sbjct: 467 GSSTAASGPVTEEEIRTVLMQKTPVTTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKT 526
Query: 1719 ANGNLVVL 1742
NG+ V+
Sbjct: 527 TNGSSYVI 534
>ref|XP_004983299.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X2 [Setaria italica]
Length = 530
Score = 408 bits (1049), Expect = e-111
Identities = 241/541 (44%), Positives = 299/541 (55%), Gaps = 4/541 (0%)
Frame = +3
Query: 138 SADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNV 317
SADL+LK C GCG +SDLYG+ CKH TLC CG SMA ++A C C PI +LIREYNV
Sbjct: 3 SADLVLKPACEGCGNTSDLYGTGCKHTTLCSECGKSMARSRARCLVCSSPITRLIREYNV 62
Query: 318 RSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLE 497
R+ TDK++ IGRFV GLP FSKK ++++KW+L +EGL+GRQI E +R+KY KP +LE
Sbjct: 63 RANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILE 122
Query: 498 DDISXXXXXXXXXXXXN--ATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEK 671
D+ + ATYYLLM HGKEF A PAG WY F+K+AQYKQLTLEEAEEK
Sbjct: 123 DETGQYQYQGQMEGSQSATATYYLLMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAEEK 182
Query: 672 MRTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXX 851
M R+ +A GY+RW+MK A +G AAFG K
Sbjct: 183 MNKRKTSATGYERWMMKAAANGPAAFGSDIKKLEATNSGEKESGRPKKAKNNEEGNNSDK 242
Query: 852 XXXXXXXXXXXXSRLGLTKK--SEEDEDGPANNXXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGLTKK +++E G + HEE FTDDDEAV
Sbjct: 243 GEEDEEEEAARKNRLGLTKKGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEAVD 302
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
DPEER DL PE+PAPPEIKQDD R+A
Sbjct: 303 IDPEERADLAPEIPAPPEIKQDD------EENEEEGGLSKSGKELKKLLGRAAGLNDSDA 356
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNE 1385
SPVLA + + S + K KRKSG +
Sbjct: 357 DEDEEEEDEDESSPVLAPKQKDQVKDEPVDNSPAKQTPSGHARSTPPASKFKQKRKSGAD 416
Query: 1386 DTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGA 1565
DTK + GAA+KK K E+ DTK SG +K+E PASA KP S++ S +
Sbjct: 417 DTKTSGGAASKKAKVES-DTKASG---IKEEAPASA------KPTSKTSASSKSGTNVSP 466
Query: 1566 VTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLR 1745
VTEDE+R+ L VAP++TQ+LV+RFK+RL+ PEDK +FA ILKKIS+IQKT N VVLR
Sbjct: 467 VTEDEIRSVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLR 526
Query: 1746 E 1748
+
Sbjct: 527 D 527
>ref|XP_004983298.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
isoform X1 [Setaria italica]
Length = 531
Score = 405 bits (1040), Expect = e-110
Identities = 240/541 (44%), Positives = 297/541 (54%), Gaps = 4/541 (0%)
Frame = +3
Query: 138 SADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNV 317
SADL+LK C GCG +SDLYG+ CKH TLC CG SMA ++A C C PI +LIREYNV
Sbjct: 3 SADLVLKPACEGCGNTSDLYGTGCKHTTLCSECGKSMARSRARCLVCSSPITRLIREYNV 62
Query: 318 RSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLE 497
R+ TDK++ IGRFV GLP FSKK ++++KW+L +EGL+GRQI E +R+KY KP +LE
Sbjct: 63 RANAITDKTYSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILE 122
Query: 498 DDISXXXXXXXXXXXXN--ATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEK 671
D+ + ATYYLLM HGKEF A PAG WY F+K+AQYKQLTLEEAEEK
Sbjct: 123 DETGQYQYQGQMEGSQSATATYYLLMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAEEK 182
Query: 672 MRTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXX 851
M R+ +A GY+RW+MK A +G AAFG K
Sbjct: 183 MNKRKTSATGYERWMMKAAANGPAAFGSDIKKLEATNSGEKESGRPKKAKNNEEGNNSDK 242
Query: 852 XXXXXXXXXXXXSRLGLTKK--SEEDEDGPANNXXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RLGLTKK +++E G + HEE FTDDDEAV
Sbjct: 243 GEEDEEEEAARKNRLGLTKKGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEAVD 302
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
DPEER DL PE+PAPPEIKQDD S
Sbjct: 303 IDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRAAGLNDSDADEDEEE 362
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNE 1385
SPVLA + + S + K KRKSG +
Sbjct: 363 EDQEDES-----SPVLAPKQKDQVKDEPVDNSPAKQTPSGHARSTPPASKFKQKRKSGAD 417
Query: 1386 DTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGA 1565
DTK + GAA+KK K E+ DTK SG +K+E PASA KP S++ S +
Sbjct: 418 DTKTSGGAASKKAKVES-DTKASG---IKEEAPASA------KPTSKTSASSKSGTNVSP 467
Query: 1566 VTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLR 1745
VTEDE+R+ L VAP++TQ+LV+RFK+RL+ PEDK +FA ILKKIS+IQKT N VVLR
Sbjct: 468 VTEDEIRSVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLR 527
Query: 1746 E 1748
+
Sbjct: 528 D 528
>gb|AAX95773.1| putative transcription initiation factor [Oryza sativa Japonica
Group] gi|78708004|gb|ABB46979.1| mutant TFIIF-alpha,
putative, expressed [Oryza sativa Japonica Group]
Length = 531
Score = 403 bits (1036), Expect = e-109
Identities = 241/542 (44%), Positives = 300/542 (55%), Gaps = 5/542 (0%)
Frame = +3
Query: 138 SADLILKSTCSGCGTSSDLYGSSCKHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNV 317
SADL+LK+ C GCG+ SDLYG+SCKH TLC +CG SMA + A C C PI LIREYNV
Sbjct: 3 SADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREYNV 62
Query: 318 RSCNTTDKSHFIGRFVQGLPSFSKKTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLE 497
R+ TTDKS IGRFV GLP FSKK ++++KW+L +EGL+GRQI E +R+KY KP +LE
Sbjct: 63 RANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILE 122
Query: 498 DDISXXXXXXXXXXXXN--ATYYLLMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEK 671
D+ + ATYYLLMMHGKEF A PAG WY F+K+AQYKQLTLEEAEEK
Sbjct: 123 DETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAEEK 182
Query: 672 MRTRRKNAEGYQRWLMKTAKDGAAAFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXX 851
M R+ +A GY+RW+MK A +G AAFG K
Sbjct: 183 MNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNSDK 242
Query: 852 XXXXXXXXXXXXSRLGLTKKS--EEDEDGPANNXXXXXXXXXXXXXXHEEVFTDDDEAVG 1025
+RL L KKS +++E G + HEE FTDDDEAV
Sbjct: 243 GEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEAVD 302
Query: 1026 NDPEEREDLGPEVPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXX 1205
DPEER DL PE+PAPPEIKQDD ++A
Sbjct: 303 IDPEERADLAPEIPAPPEIKQDD------EENEEEGGLSKSGKELKKLLGKAAGLNESDA 356
Query: 1206 XXXXXXXXXIALSPVLAXXXXXXXXXXXXXXXXXXXS-SAPTTASPNGSKATKGKRKSGN 1382
SPVLA + S +P SK+ + ++ G
Sbjct: 357 DEDDEDDDEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGGG 416
Query: 1383 EDTKPNTGAATKKIKTEAQDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATG 1562
+D+K + GAA+KK K E+ DTK S KDE P+S +KPAS++ S TS
Sbjct: 417 DDSKASGGAASKKAKVES-DTK---PSVAKDETPSS------SKPASKATAASKTSANVS 466
Query: 1563 AVTEDEVRAFLKQVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVL 1742
VTEDE+R L VAP++TQ+LV+RFK+RL+ PEDK +FA ILKKIS+IQKT N VVL
Sbjct: 467 PVTEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVL 526
Query: 1743 RE 1748
R+
Sbjct: 527 RD 528