BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00003630
         (626 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMJ11061.1| hypothetical protein PRUPE_ppa003774mg [Prunus pe...    70   5e-10
gb|EOY25135.1| RNA-binding family protein, putative [Theobroma c...    69   1e-09
ref|XP_004300414.1| PREDICTED: uncharacterized protein LOC101311...    65   2e-08
ref|NP_199496.1| RNA recognition motif-containing protein [Arabi...    61   3e-07
ref|NP_001078722.1| RNA recognition motif-containing protein [Ar...    61   3e-07
gb|AAM63703.1| unknown [Arabidopsis thaliana]                          60   7e-07
ref|XP_006280324.1| hypothetical protein CARUB_v10026247mg [Caps...    57   4e-06
ref|XP_003517031.1| PREDICTED: nucleolar protein 12-like [Glycin...    57   4e-06
gb|EXB66545.1| RNA-binding protein 34 [Morus notabilis]                56   7e-06
ref|XP_002865157.1| RNA recognition motif-containing protein [Ar...    56   7e-06
ref|XP_002277589.1| PREDICTED: uncharacterized protein LOC100266...    56   7e-06
ref|XP_004512514.1| PREDICTED: nucleolar protein 12-like [Cicer ...    56   1e-05

>gb|EMJ11061.1| hypothetical protein PRUPE_ppa003774mg [Prunus persica]
          Length = 550

 Score = 70.1 bits (170), Expect = 5e-10
 Identities = 61/150 (40%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHP-----LNDDLKDSNRKRA 460
           DRELRLS AKPDS             P   K   S  K N P     +     D N+  +
Sbjct: 412 DRELRLSHAKPDST------------PSKRKNPSSGSKANSPAKKLAVGSRTPDFNKVGS 459

Query: 459 KLSLSYQGTKANKTDSSVTKVFGTESR-----ENSSNKSV-PKERKFKRPSVAARKTKTS 298
           K + SYQG +A K    V K F ++S      E+ S   V PKERK KRPSVAARK K S
Sbjct: 460 KATKSYQGMRAGKP--GVQKKFHSKSSRQDTFESRSQSGVKPKERKDKRPSVAARKAKAS 517

Query: 297 -KSPVANVTGEKRKREQPRSGNSRTPKRSR 211
            +   A  TG KRK +      SRTP+ S+
Sbjct: 518 FEGGAAKQTGIKRKMD------SRTPESSQ 541


>gb|EOY25135.1| RNA-binding family protein, putative [Theobroma cacao]
          Length = 533

 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 54/154 (35%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKD-------SNRK 466
           DRELRLS A+PD            + P   K   S+   N+P      D        +R 
Sbjct: 391 DRELRLSHARPD------------VTPSKRKNPSSSGTNNNPAKKFAVDPSTPSTNGSRS 438

Query: 465 RAKLSLSYQGTKANKTDSSVTK------VFGTESRENSSNKSVPKERKFKRPSVAARKTK 304
            AK SLSYQG +A+K  S V K      +   +++  +     PKERK KRPSVAARK K
Sbjct: 439 NAKASLSYQGLRASK--SGVQKKAHSKGISPVKTKFKAQKSEKPKERKAKRPSVAARKAK 496

Query: 303 TSKSPVANVT---GEKRKREQPRSGNSRTPKRSR 211
                 A V+   G KRK +   SG++   K+++
Sbjct: 497 AKAHKDAGVSKQAGVKRKLDSSSSGSAHQKKKAK 530


>ref|XP_004300414.1| PREDICTED: uncharacterized protein LOC101311380 [Fragaria vesca
           subsp. vesca]
          Length = 517

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 55/143 (38%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
 Frame = -3

Query: 624 DRELRLSRAKPDS----QKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRAK 457
           +RELRLS AKP+S     K    T + +  P     SKS  KR  P         +  +K
Sbjct: 375 NRELRLSHAKPESVTSKSKNQDSTPSKRSNPSPASNSKSPAKR--PAVGPRTPEFKGNSK 432

Query: 456 LSLSYQGTKANKTDSSVTKVFGTESRENSSNKSVPKERKFKRPSVAARKTKTS--KSPVA 283
            ++SYQG +A K           ESR  S  K  PKER  KRPSVAARK K +   S  +
Sbjct: 433 ATMSYQGVRAGKNGVQKYPKAKFESRPQSGVK--PKERMEKRPSVAARKAKAAFQGSAPS 490

Query: 282 NVTGEKRKREQPRSGNSRTPKRS 214
              G KRK +      SRTP+ S
Sbjct: 491 KEAGVKRKMD------SRTPESS 507


>ref|NP_199496.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|8809667|dbj|BAA97218.1| unnamed protein product
           [Arabidopsis thaliana] gi|32441262|gb|AAP81806.1|
           At5g46840 [Arabidopsis thaliana]
           gi|110736326|dbj|BAF00133.1| hypothetical protein
           [Arabidopsis thaliana] gi|332008049|gb|AED95432.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 501

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRAKLSLS 445
           +RELR+SR KPD+  + +   +    P   +  K  V    P             K +LS
Sbjct: 354 ERELRISRVKPDTPSKRKSNPSEAYSPAQKRLQKDKVVTPTPTG-----------KANLS 402

Query: 444 YQGTKANKT----------DSSVTKVF--GTESREN--SSNKSVPKERKFKRPSVAARKT 307
           YQG +A+K+           S+ TK+   G+ S +N  S N S  KER  KRP+VAARK 
Sbjct: 403 YQGVRASKSGDDKKTPYQKSSAQTKMRPRGSSSNDNKKSGNNSASKERSQKRPAVAARKA 462

Query: 306 KTSKSPVANVTGEKRKREQPRSGNSRTPK 220
           K + +  +  +G KR     R   +RTP+
Sbjct: 463 K-ANAKGSKESGGKRFAGTKRKQENRTPE 490


>ref|NP_001078722.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|222424348|dbj|BAH20130.1| AT5G46840 [Arabidopsis
           thaliana] gi|332008050|gb|AED95433.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 364

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRAKLSLS 445
           +RELR+SR KPD+  + +   +    P   +  K  V    P             K +LS
Sbjct: 217 ERELRISRVKPDTPSKRKSNPSEAYSPAQKRLQKDKVVTPTPTG-----------KANLS 265

Query: 444 YQGTKANKT----------DSSVTKVF--GTESREN--SSNKSVPKERKFKRPSVAARKT 307
           YQG +A+K+           S+ TK+   G+ S +N  S N S  KER  KRP+VAARK 
Sbjct: 266 YQGVRASKSGDDKKTPYQKSSAQTKMRPRGSSSNDNKKSGNNSASKERSQKRPAVAARKA 325

Query: 306 KTSKSPVANVTGEKRKREQPRSGNSRTPK 220
           K + +  +  +G KR     R   +RTP+
Sbjct: 326 K-ANAKGSKESGGKRFAGTKRKQENRTPE 353


>gb|AAM63703.1| unknown [Arabidopsis thaliana]
          Length = 501

 Score = 59.7 bits (143), Expect = 7e-07
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRAKLSLS 445
           +RELR+SR KPD+  + +   +    P   +  K  V    P             K +LS
Sbjct: 354 ERELRISRVKPDTPSKRKSNPSEAYSPAQKRLQKDKVVTPTPTG-----------KANLS 402

Query: 444 YQGTKANKT----------DSSVTKVF--GTESREN--SSNKSVPKERKFKRPSVAARKT 307
           YQG +A+++           S+ TK+   G+ S +N  S N S  KER  KRP+VAARK 
Sbjct: 403 YQGVRASRSGDDKKTPYQKSSAQTKMRPRGSSSNDNKKSGNNSASKERSQKRPAVAARKA 462

Query: 306 KTSKSPVANVTGEKRKREQPRSGNSRTPK 220
           K + +  +  +G KR     R   +RTP+
Sbjct: 463 K-ANAKGSKESGGKRFAGTKRKQENRTPE 490


>ref|XP_006280324.1| hypothetical protein CARUB_v10026247mg [Capsella rubella]
           gi|482549028|gb|EOA13222.1| hypothetical protein
           CARUB_v10026247mg [Capsella rubella]
          Length = 511

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRAKLSLS 445
           +RELR+SR KPD+        TP  +     E+ S  ++   L  D   +     K SLS
Sbjct: 362 ERELRISRVKPDA--------TPSKRKSNPSEAYSPAQKR--LQKDKVVTPTPTGKASLS 411

Query: 444 YQGTKANKTDSSVTKVF---------------GTESRENSSNKSVPKERKFKRPSVAARK 310
           YQG +A+K+     K +                 E  + + N S  K+R  KRP+VAARK
Sbjct: 412 YQGVRASKSGDDKKKPYQKSSAQSKMRPRGSSSNEDNKKAGNNSALKQRSQKRPAVAARK 471

Query: 309 TKTSKSPVANVTGEKRKREQPRSGNSRTPK 220
            K + +  +  +G KR     R   +RTP+
Sbjct: 472 AK-ANAKGSKESGGKRFAGTKRKQENRTPE 500


>ref|XP_003517031.1| PREDICTED: nucleolar protein 12-like [Glycine max]
          Length = 515

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 54/151 (35%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
 Frame = -3

Query: 624 DRELRLSRAK----PDSQKRTQQTHTPKL-----QPQFHKESK-----SNVKRNHPLNDD 487
           DRELRL  AK    P  +      H P        P  H  S      S   R+   +++
Sbjct: 371 DRELRLCHAKADATPSKRPNPSSAHAPSTPAKRPNPSAHAPSTPAKKFSVASRSPSSSNN 430

Query: 486 LKDSNRKRAKLSLSYQGTKANKTDSSVTKVFGTESRENSSNKSVPKERKFKRPSVAARKT 307
           +  SNRK    + SYQG +A K+D    K+ G E          PKERK KRPSVAARK 
Sbjct: 431 MSKSNRKT---NTSYQGLRATKSDVH-KKIQGGEK---------PKERKTKRPSVAARKA 477

Query: 306 KTS---KSPVANVTGEKRKREQPRSGNSRTP 223
           K +   +S +    G KRK +      SRTP
Sbjct: 478 KANLVKQSDLPKQAGMKRKVD------SRTP 502


>gb|EXB66545.1| RNA-binding protein 34 [Morus notabilis]
          Length = 510

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRA--KLS 451
           DRELRL  AKPDS      T   +  P   +++ S  K+     D       K+A   +S
Sbjct: 373 DRELRLFHAKPDS------TPFKRKNPASAEKTSSPAKK---FRDSGSGDVSKKAFTNIS 423

Query: 450 LSYQGTKANKT--DSSVTKVFGTESRENSSNKSVPKERKFKRPSVAARKTKT---SKSPV 286
            SYQG +A+K+     V K F  E     ++  V +ERK KRP+VAARK K    S+   
Sbjct: 424 TSYQGLRASKSGVQKKVAKGFRPEKSTTKAHNGV-RERKEKRPAVAARKAKANALSEIGA 482

Query: 285 ANVTGEKRKREQPRSGNSRTPKRSR 211
           +   G KRK +     +S   K+++
Sbjct: 483 SKQAGTKRKMDSWTPESSHRKKKAK 507


>ref|XP_002865157.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
           lyrata] gi|297310992|gb|EFH41416.1| RNA recognition
           motif-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 509

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRAKLSLS 445
           +RELR+SR KPD+        TP  +     E+ S  ++   L  D   +     K +LS
Sbjct: 360 ERELRISRVKPDA--------TPSKRKSNPSEAYSPAQKR--LQKDKVVTPTPTGKANLS 409

Query: 444 YQGTKANKTDSSVTKVF---------------GTESRENSSNKSVPKERKFKRPSVAARK 310
           YQG +A+K+       +                 E  + S N S  K+R  KRP+VAARK
Sbjct: 410 YQGVRASKSGDDKKNPYQKSPAQAKMRPRGSSSNEDNKKSGNNSALKQRSQKRPAVAARK 469

Query: 309 TKTSKSPVANVTGEKRKREQPRSGNSRTPK 220
            K + S  +  +G KR     R   +RTP+
Sbjct: 470 AK-ANSKGSKESGGKRFAGTKRKQENRTPE 498


>ref|XP_002277589.1| PREDICTED: uncharacterized protein LOC100266124 [Vitis vinifera]
          Length = 541

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
 Frame = -3

Query: 624 DRELRLSRAKPDS----QKRTQQTHTPKLQPQFHKESKSNVKRNHPLNDDLKDSNRKRAK 457
           DR+LRL  AKP S    ++R        + P     S S +         L+ SNR + K
Sbjct: 395 DRDLRLYHAKPSSTTPSKRRNPTPAEADISPAKKLASGSRIS--------LESSNRLKTK 446

Query: 456 LSLSYQGTKANKTDSSVTKVFGTESRE------NSSNKSVPKERKFKRPSVAARKTKTSK 295
             +SYQG +A+K  S V K    +++E       +  ++  KE++ KRP+VAARK K + 
Sbjct: 447 SVISYQGLQASK--SGVPKKGRLQTKEAVKFKSKNQKENTLKEQQKKRPAVAARKAKINA 504

Query: 294 SPVANVTGEKRKREQPRSGNSRTPKRSRAA*K 199
              A   G  ++  + R   S+TP+  R + K
Sbjct: 505 VNAAGGGGGSKQTGKKRKLESQTPEGGRRSKK 536


>ref|XP_004512514.1| PREDICTED: nucleolar protein 12-like [Cicer arietinum]
          Length = 525

 Score = 55.8 bits (133), Expect = 1e-05
 Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 19/157 (12%)
 Frame = -3

Query: 624 DRELRLSRAKPDSQKRTQQTHTPKLQPQFHKESKSNVKRNHP----------------LN 493
           DRELRLS AK D+   +++ ++P  +P   K   +  KR +                   
Sbjct: 377 DRELRLSHAKADATP-SKRPYSPAARPSHGKADATPSKRPYSPAARAHSTPAKKFSGASR 435

Query: 492 DDLKDSNRKRAKLSLSYQGTKANKTDSSVTKVFGTESRENSSNKSVPKERKFKRPSVAAR 313
                +NR     + SYQG +A K+D            + S     PKER  KRP+VAAR
Sbjct: 436 SPSSSNNRANKNATASYQGLRATKSDV----------HKKSHGGEKPKERTKKRPTVAAR 485

Query: 312 KTKTS---KSPVANVTGEKRKREQPRSGNSRTPKRSR 211
           K K +   +      TG KRK +      SRTP  SR
Sbjct: 486 KAKANLQKEGGTPKQTGSKRKFD------SRTPDSSR 516