BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00003574
         (1217 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 772   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   764   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   762   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   758   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   755   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   752   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   752   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   752   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   752   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   751   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   691   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             562   e-158
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   559   e-157
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   523   e-146
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   512   e-142
gb|AFM77886.1| replicase [Hosta virus X]                              503   e-140
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   503   e-140
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   491   e-136
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               490   e-136
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 467   e-129

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  772 bits (1993), Expect = 0.0
 Identities = 374/388 (96%), Positives = 384/388 (98%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETIKARLTISTPEANIEEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCA
Sbjct: 978  EALLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCA 1037

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS+NQ+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1038 EEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1097

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAF
Sbjct: 1098 QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAF 1157

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE
Sbjct: 1158 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 1217

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQW
Sbjct: 1218 CNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQW 1277

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L
Sbjct: 1278 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDEL 1337

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
             DLLSPRQAHLHQVTVRDLVKFGGSPFL
Sbjct: 1338 HDLLSPRQAHLHQVTVRDLVKFGGSPFL 1365


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  764 bits (1972), Expect = 0.0
 Identities = 370/388 (95%), Positives = 381/388 (98%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWE I+ARL ISTPEANIEEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCA
Sbjct: 995  EALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCA 1054

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKK++ Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASF
Sbjct: 1055 EEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASF 1114

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF
Sbjct: 1115 QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 1174

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE
Sbjct: 1175 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 1234

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW
Sbjct: 1235 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 1294

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 1295 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDL 1354

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1355 QDLLSPHQAHLHQVTVRDLVKFGGSPFL 1382


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  762 bits (1968), Expect = 0.0
 Identities = 370/388 (95%), Positives = 379/388 (97%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLTIS PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCA
Sbjct: 990  EALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCA 1049

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS+ QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1050 EEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1109

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF
Sbjct: 1110 QQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 1169

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTE
Sbjct: 1170 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTE 1229

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 1230 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 1289

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 1290 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDL 1349

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 1350 QDLLSPHQAHLHQVTVRDLVKFGGSPFL 1377


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  758 bits (1958), Expect = 0.0
 Identities = 367/388 (94%), Positives = 379/388 (97%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLTIS+PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCA
Sbjct: 321  EALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCA 380

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS+ QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 381  EEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 440

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAF
Sbjct: 441  QQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAF 500

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTE
Sbjct: 501  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTE 560

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 561  CNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 620

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 621  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDL 680

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 681  QDLLSPHQAHLHQVTVRDLVKFGGSPFL 708


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  755 bits (1950), Expect = 0.0
 Identities = 366/388 (94%), Positives = 377/388 (97%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLT+S PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCA
Sbjct: 990  EALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCA 1049

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1050 EEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1109

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF
Sbjct: 1110 QQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 1169

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTE
Sbjct: 1170 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTE 1229

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 1230 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 1289

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 1290 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDL 1349

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1350 QDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  752 bits (1942), Expect = 0.0
 Identities = 364/388 (93%), Positives = 376/388 (96%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLT+S PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCA
Sbjct: 990  EALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCA 1049

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS++QIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1050 EEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1109

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAF
Sbjct: 1110 QQHAVMLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAF 1169

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTE
Sbjct: 1170 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTE 1229

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 1230 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 1289

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 1290 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDL 1349

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1350 QDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  752 bits (1941), Expect = 0.0
 Identities = 365/388 (94%), Positives = 376/388 (96%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLT+S PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCA
Sbjct: 990  EALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCA 1049

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1050 EEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1109

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAF
Sbjct: 1110 QQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAF 1169

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTE
Sbjct: 1170 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTE 1229

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 1230 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 1289

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 1290 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDL 1349

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1350 QDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  752 bits (1941), Expect = 0.0
 Identities = 365/388 (94%), Positives = 376/388 (96%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLT+S PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCA
Sbjct: 990  EALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCA 1049

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1050 EEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1109

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAF
Sbjct: 1110 QQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAF 1169

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTE
Sbjct: 1170 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTE 1229

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 1230 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 1289

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 1290 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDL 1349

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1350 QDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  752 bits (1941), Expect = 0.0
 Identities = 365/388 (94%), Positives = 376/388 (96%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLT+S PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCA
Sbjct: 990  EALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCA 1049

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1050 EEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1109

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAF
Sbjct: 1110 QQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAF 1169

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTE
Sbjct: 1170 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTE 1229

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 1230 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 1289

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDL
Sbjct: 1290 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDL 1349

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1350 QDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  751 bits (1939), Expect = 0.0
 Identities = 364/388 (93%), Positives = 375/388 (96%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARLT+S PEAN+ EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCA
Sbjct: 990  EALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCA 1049

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF
Sbjct: 1050 EEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 1109

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF
Sbjct: 1110 QQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 1169

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTE
Sbjct: 1170 DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTE 1229

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQW
Sbjct: 1230 CNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQW 1289

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDL
Sbjct: 1290 AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDL 1349

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QA LHQVTVRDLVKFGGS FL
Sbjct: 1350 QDLLSPHQARLHQVTVRDLVKFGGSSFL 1377


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  691 bits (1782), Expect = 0.0
 Identities = 332/388 (85%), Positives = 357/388 (92%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETI ARL +STPEAN+ EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA
Sbjct: 971  EALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCA 1030

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
             EVQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASF
Sbjct: 1031 AEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASF 1090

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQ AVMLYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAF
Sbjct: 1091 QQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAF 1150

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTE
Sbjct: 1151 DQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTE 1210

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG W
Sbjct: 1211 CNIAYTHTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAW 1270

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDL
Sbjct: 1271 AEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDL 1330

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            QDLLSP QAHLHQVTVRDL KFGGSPFL
Sbjct: 1331 QDLLSPEQAHLHQVTVRDLTKFGGSPFL 1358


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  562 bits (1449), Expect = e-158
 Identities = 280/388 (72%), Positives = 312/388 (80%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A
Sbjct: 997  EALLWETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSA 1056

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
             EVQNTYL K +N +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASF
Sbjct: 1057 AEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASF 1116

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF   SYANDFTAF
Sbjct: 1117 QQHAVMLYGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAF 1176

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTE
Sbjct: 1177 DQSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTE 1236

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G W
Sbjct: 1237 CNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAW 1296

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  LAY+L D L
Sbjct: 1297 AEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSL 1354

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
             ++LSP QA LHQ TVR LVK     +L
Sbjct: 1355 YEILSPEQAELHQETVRTLVKLTKGTYL 1382


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  559 bits (1440), Expect = e-157
 Identities = 279/388 (71%), Positives = 311/388 (80%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A
Sbjct: 997  EALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSA 1056

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
             EVQNTYL K +N +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASF
Sbjct: 1057 AEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASF 1116

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF   SYANDFTAF
Sbjct: 1117 QQHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAF 1176

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQD AMLQFEILKAK+FN+P  +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTE
Sbjct: 1177 DQSQDAAMLQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTE 1236

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G W
Sbjct: 1237 CNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAW 1296

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY  D  LAY+L D L
Sbjct: 1297 AEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSL 1354

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
             ++LSP QA LHQ TVR LVK     +L
Sbjct: 1355 YEILSPEQAELHQETVRTLVKLTKGAYL 1382


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  523 bits (1348), Expect = e-146
 Identities = 268/393 (68%), Positives = 301/393 (76%), Gaps = 5/393 (1%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EALLWETIKARL IS  + N  EF  KKD+GDILW NY +AM LP++   F E+LW   A
Sbjct: 1065 EALLWETIKARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAA 1123

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
             E+Q+TYL KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIKPGQTIASF
Sbjct: 1124 REIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASF 1183

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQ AVMLYGTMARYMRR RD   P +IMINCE+TP DLS W LNYW+F KPSYANDFTAF
Sbjct: 1184 QQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAF 1243

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSIMRLTGE  TFDANTE
Sbjct: 1244 DQSQDGAMLQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTE 1303

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQ 331
            CNIAYTHTRF+IPEG AQ     D A+   C EKPSF L+++ ++L+      KP    Q
Sbjct: 1304 CNIAYTHTRFDIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQ 1358

Query: 330  ERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS 151
              G+WAEFCGYLITPKGLIKDPLKL AS  LAK + K      + N + NY+ D KLAY 
Sbjct: 1359 IPGEWAEFCGYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYD 1414

Query: 150  LGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            LGDDL +LL+P QA LHQVTVRD++K G S  L
Sbjct: 1415 LGDDLLELLTPEQAQLHQVTVRDMIKLGASDIL 1447


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  512 bits (1319), Expect = e-142
 Identities = 252/388 (64%), Positives = 302/388 (77%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            +ALLW TI+ARL IS P+ANI EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA
Sbjct: 1318 QALLWATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACA 1377

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            +EVQ TYL K IN +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASF
Sbjct: 1378 QEVQGTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASF 1437

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQ AVMLYGTMARYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +YANDFT F
Sbjct: 1438 QQSAVMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQF 1497

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTE
Sbjct: 1498 DQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTE 1557

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTH RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA   Q+RG W
Sbjct: 1558 CNIAYTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFW 1617

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGYLITP G++KDP KL A++ LA+ Q K      +     +++LD KLAY   D L
Sbjct: 1618 AEFCGYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDAL 1671

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
             ++LS +Q  LHQ+TVR LVK G S  L
Sbjct: 1672 TEVLSEKQQELHQLTVRTLVKSGASEIL 1699


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  503 bits (1296), Expect = e-140
 Identities = 249/384 (64%), Positives = 294/384 (76%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA
Sbjct: 1070 EALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCA 1129

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            +EVQ TYL K IN IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF
Sbjct: 1130 QEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASF 1189

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
             Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +YANDFTAF
Sbjct: 1190 HQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAF 1249

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTE
Sbjct: 1250 DQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTE 1309

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G W
Sbjct: 1310 CNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAW 1369

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL+Y LGD L
Sbjct: 1370 AEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHL 1425

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGG 64
            Q+LLS  Q   HQVTVR+LVKF G
Sbjct: 1426 QELLSESQCRTHQVTVRELVKFAG 1449


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  503 bits (1296), Expect = e-140
 Identities = 249/384 (64%), Positives = 294/384 (76%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            EAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA
Sbjct: 1104 EALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCA 1163

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            +EVQ TYL K IN IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF
Sbjct: 1164 QEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASF 1223

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
             Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V   WDFS  +YANDFTAF
Sbjct: 1224 HQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAF 1283

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTE
Sbjct: 1284 DQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTE 1343

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G W
Sbjct: 1344 CNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAW 1403

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +Y  D KL+Y LGD L
Sbjct: 1404 AEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHL 1459

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGG 64
            Q+LLS  Q   HQVTVR+LVKF G
Sbjct: 1460 QELLSESQCRTHQVTVRELVKFAG 1483


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  491 bits (1265), Expect = e-136
 Identities = 233/388 (60%), Positives = 292/388 (75%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            + LLW TI+ARL ISTPE N+ E+  K+++GD+LW +Y  AM LP+E   F + LW  CA
Sbjct: 1117 QTLLWATIEARLKISTPERNLAEYLMKREVGDVLWLHYKNAMNLPEEPIPFEQTLWDTCA 1176

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQ TYL K ++ +K GE RQSPDFH++ I +FLKSQWVKKMEKLGA KIKPGQTIASF
Sbjct: 1177 EEVQKTYLSKPMHMLKNGELRQSPDFHKNTIALFLKSQWVKKMEKLGADKIKPGQTIASF 1236

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQ AVMLYGTMARYMRR R+   P ++ INCE++P+ +S W+ N W+F   +YANDFT F
Sbjct: 1237 QQAAVMLYGTMARYMRRMREVFQPTHVFINCEQSPEGMSDWIKNEWNFKGNAYANDFTQF 1296

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK +  +F GTL IMRLTGEGPTFDANTE
Sbjct: 1297 DQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAHVFTGTLGIMRLTGEGPTFDANTE 1356

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIAYTH RF +P+GTAQ YAGDD  +A +  E+ SF + KN++ L AKP Y PQ +G+W
Sbjct: 1357 CNIAYTHLRFNVPKGTAQAYAGDDSVLACIPEERESFKMWKNKLELTAKPEYFPQMQGEW 1416

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            A+FCG+L TP G +K+PLK+ A +ELAK       +  +   + +Y+LD  L Y  GD L
Sbjct: 1417 AQFCGFLFTPLGALKEPLKMLAVVELAKQ------RGELKKNMRSYALDVLLNYQHGDAL 1470

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            Q + S +Q   HQ+TVR+L+KFGGS  L
Sbjct: 1471 QHVFSEKQLEAHQITVRNLIKFGGSSIL 1498


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  490 bits (1262), Expect = e-136
 Identities = 239/388 (61%), Positives = 294/388 (75%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            + LLW TI+ARL IS P+AN+EEFR KK++GD+LW NY +AMKLP +  EFS +LW  CA
Sbjct: 1286 QTLLWATIEARLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACA 1345

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
            EEVQ TYL K +N IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASF
Sbjct: 1346 EEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASF 1405

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAF 676
            QQ  VMLYGTMARYMRR R A  P NI +NCE+TPQ L+ ++ + W F +P+YANDFT F
Sbjct: 1406 QQATVMLYGTMARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQF 1465

Query: 675  DQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTE 496
            DQSQDGAMLQFE+LKAK+ N+PE +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTE
Sbjct: 1466 DQSQDGAMLQFEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTE 1525

Query: 495  CNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQW 316
            CNIA+ HTRF I + TAQ+YAGDD A +++  EK SF  +  ++AL +KP +  Q++G+W
Sbjct: 1526 CNIAFNHTRFHISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEW 1585

Query: 315  AEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDL 136
            AEFCGY ITP GLIK+P KL A+L LA  Q K  +KD ++    +YS D  LAY   D+L
Sbjct: 1586 AEFCGYSITPLGLIKEPKKLQANLTLAIKQNK--IKDTVN----SYSQDVALAYQHKDEL 1639

Query: 135  QDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
             ++    Q   HQ TVR LVKFGG+  L
Sbjct: 1640 YEIFDENQMRDHQTTVRTLVKFGGNEIL 1667


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  467 bits (1201), Expect = e-129
 Identities = 237/391 (60%), Positives = 284/391 (72%), Gaps = 3/391 (0%)
 Frame = -3

Query: 1215 EALLWETIKARLTISTPEANIEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 1036
            E LLW TI+ARL IS P+AN +EF  K+ +GD+L+  Y +AM LP E   F   LW  C 
Sbjct: 1146 ETLLWATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCI 1205

Query: 1035 EEVQNTYLKKSINQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 856
             EVQ TYL K IN +K G+ RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF
Sbjct: 1206 HEVQRTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASF 1265

Query: 855  QQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLN---YWDFSKPSYANDF 685
             Q  VML+GTMARYMRR R+   P NI INCE TP+DL+ W +     W F+ PS ANDF
Sbjct: 1266 HQATVMLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDF 1325

Query: 684  TAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDA 505
            TAFDQSQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDA
Sbjct: 1326 TAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDA 1385

Query: 504  NTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQER 325
            NTECNIA+TH +F+IP+GTAQ+YAGDD AI    P + SF L++ ++ L++KPA   QE+
Sbjct: 1386 NTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEK 1445

Query: 324  GQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLG 145
            G WAEFCGY ITPKG IKDP KLHASL L   +KK G    + NV+ +Y LD  LAY   
Sbjct: 1446 GDWAEFCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDLALAYQHR 1499

Query: 144  DDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 52
            D+L +LLS  +  LH  TVR LVK GG   L
Sbjct: 1500 DELHELLSEEELRLHYDTVRTLVKSGGGEVL 1530