BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00003262
         (5794 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...  2660   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2627   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  2603   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  2593   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  2588   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  2588   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  2588   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...  2587   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  2586   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  2586   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...  2585   0.0  
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus...  2584   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...  2583   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...  2583   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...  2583   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...  2583   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  2580   0.0  
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...  2580   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...  2578   0.0  
ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago trunca...  2577   0.0  

>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 2660 bits (6895), Expect = 0.0
 Identities = 1298/1485 (87%), Positives = 1405/1485 (94%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KC++C A MAECPGHFGHLELAKPM+HIGFLKTVLSI+RCVCFNCSRIL
Sbjct: 54   DPRLGTIDRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADEEDHRFKQA+K++NPK RLK+VLDCCKNKTKCEGGD I           VKKK HGGC
Sbjct: 114  ADEEDHRFKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGC 173

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPKITI+GMK++AEY+ PRKK DEQ+Q++PEPVERKQQL AE+VLN+LKRI+DE+CQ
Sbjct: 174  GAQQPKITIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQ 233

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQV+        PSVMM+++SRSEDDLTHQLAM+IRHNE LK+QE
Sbjct: 234  LLGLNPKYARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQE 293

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            KNGAPAHI++EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 294  KNGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 353

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 354  MGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 413

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIR+DGQRLDLRYLK+S DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 414  GKTGAKYIIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 473

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 474  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 533

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGKIPAP I KPRP+WTGKQV
Sbjct: 534  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQV 593

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINLIRYSAWH+ESE GF+T GDT VRIE+GE+L GTLCKKTLG+SSGSLIHV
Sbjct: 594  FNLIIPKQINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHV 653

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQQ FS+GIGDTIADAATMEKINETIS AK +V++
Sbjct: 654  IWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKE 713

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI+ AQEK+LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 714  LIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSK 773

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GFN RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 774  GSFINISQMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 833

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 834  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 893

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIESQKLDSLKMKR EF++ YKYE DQ++WSP+YMLP ++EDLK+IREFQNVF+AE
Sbjct: 894  MDAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAE 953

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EI  +GDNSWP+PVNLKRLIWN QK+FK+D RRPSDMHPMEIVEA+D
Sbjct: 954  VQKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVD 1013

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LT+EAF+W++GEIE+
Sbjct: 1014 KLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIES 1073

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1074 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1133

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLK EV KTKE+AKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFV+
Sbjct: 1134 KTPSLSVYLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVR 1193

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+++P++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1194 SYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA 1253

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIKS KIN
Sbjct: 1254 EKLILRIRIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKIN 1313

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFDENEGF P  EWMLDTEGVN+LAVMC+E+VDA+RTTSNHLIEVI+VLGIEAVR+ALLD
Sbjct: 1314 KFDENEGFKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLD 1373

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1374 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1433

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSYMEG+DF M+
Sbjct: 1434 DAAVYAEADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMT 1493

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            PS SP+  +P H+ MMSP YL SPNM SSPI DAQFSPYVGGMAF
Sbjct: 1494 PSRSPMTGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2627 bits (6810), Expect = 0.0
 Identities = 1284/1485 (86%), Positives = 1394/1485 (93%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADEEDH+FKQA K++NPK+RLK++LD CKNK+KCEGGD I             KK  GGC
Sbjct: 114  ADEEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK+TI+GMK+IAEY+  RKK D+ +QL PEPVERKQQL+AERVLN+LKRISDE+C 
Sbjct: 172  GAQQPKLTIEGMKMIAEYKIQRKKNDDPEQL-PEPVERKQQLSAERVLNVLKRISDEDCI 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIR+DGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGKIPAP I KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL+R SAWH+ESE GF+T GDTQVRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ GFS+GIGDTIADAATMEKINETIS AK +V++
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKE 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI  AQE++LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIE+QKLDSLKMK+ EFD  +KYE D ++W+P+YMLP ++EDLK+IREF+NVF+AE
Sbjct: 891  MDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EIA +GDNSWP+PVNLKRLIWN QK FK+D RRPSDMHPMEIVEA+D
Sbjct: 951  VQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LT+EAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKP+V KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVK
Sbjct: 1131 KTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+++P++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIKS K+N
Sbjct: 1251 EKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVN 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFDE+EGF P  EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR++LLD
Sbjct: 1311 KFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+MLQ AIELQLPSYMEG+DF M+
Sbjct: 1431 DAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            PS SP+  +P HD MMSP+YL SPN+  SPI DAQFSPYVGGMAF
Sbjct: 1491 PSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535



 Score = 61.2 bits (147), Expect = 5e-06
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MD RFP+SPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMS 32


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 2603 bits (6748), Expect = 0.0
 Identities = 1267/1485 (85%), Positives = 1387/1485 (93%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C AGMAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+D +FKQA+K++NPK+RLKR+ D CK+K  C GGD +           VK++  GGC
Sbjct: 114  ADEDDTKFKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKRR--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQP IT+DGMK++AE++AP+KK D+Q+QL PEPVERKQ L+AERVLN+LKRISDE+C 
Sbjct: 172  GAQQPNITVDGMKMVAEFKAPKKKNDDQEQL-PEPVERKQILSAERVLNVLKRISDEDCL 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P+FARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI+TEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDPNINID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIR+DGQRLDLRY+K+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWE+FDGK+PAP I KPRPIWTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPK INLIR+SAWH+E+E GF+T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ GFS+GIGDTIADAATMEKINETIS AK +V++
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKE 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++A +K LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAHDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIESQKLDSLKMK+ EFD  ++YE D ++W PNYMLP ++EDLK+IREF+NVF AE
Sbjct: 891  MDAVWIESQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EIA +GDN+WP+PVNLKRLIWN QK FKID RRPSDMHPMEIVEAID
Sbjct: 951  VQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAID 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LTKEAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+
Sbjct: 1131 KTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVR 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDED+ PD+ISPWLLRIELNREMMVDKKLSMADIAEKINHEF DD++CIFNDDNA
Sbjct: 1191 SYYEMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILR+RI ND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+N
Sbjct: 1251 DKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVN 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KF++N+GF P  EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLD
Sbjct: 1311 KFEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AESDYLRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+
Sbjct: 1431 DAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SP+  +P H+ MMSPSYL SPN+ +SPI DAQFSPYVGGMAF
Sbjct: 1491 PARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 2593 bits (6722), Expect = 0.0
 Identities = 1267/1485 (85%), Positives = 1382/1485 (93%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
             DE+DH+FK A+++KNPK+RLK++LD CKNKTKCEGGD I             KK  GGC
Sbjct: 114  VDEDDHKFKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQDTDEPL----KKSRGGC 169

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK+TIDGMK++AEY+A RKK+D+Q+QL PEPVERKQ LTAERVL++LKRISDE+CQ
Sbjct: 170  GAQQPKLTIDGMKMVAEYKAQRKKSDDQEQL-PEPVERKQTLTAERVLSVLKRISDEDCQ 228

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 229  LLGLNPKYARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 288

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NG+PAHI++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 289  RNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNL 348

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 349  MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 408

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 409  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 468

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 469  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 528

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQV
Sbjct: 529  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQV 588

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL R SAWH+ESE G +T GDT VRIEKGE+L GTLCKK LG+S+GSLIHV
Sbjct: 589  FNLIIPKQINLQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHV 648

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADAATMEKINETIS AK +V++
Sbjct: 649  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKE 708

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI KAQ K LE EPGRTMM+SFEN+VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 709  LISKAQSKSLEPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSK 768

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 769  GSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 828

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 829  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 888

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIESQKLDSLKMK+KEFD T+ Y FD ++W+P+YMLP ++EDLK+IREF+NVF+AE
Sbjct: 889  MDAVWIESQKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAE 948

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            V KLE DR QLG EIA +GDNSWPLPVNLKRLIWN QK FKID RR SDMHPMEIVEAID
Sbjct: 949  VSKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAID 1008

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERLRVVPGDD LS EAQKNATLFFNILLRST ASKRVL+EY LT+EAFEW++GEIE+
Sbjct: 1009 KLQERLRVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIES 1068

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+I
Sbjct: 1069 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRI 1128

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPE  KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMST+IEED+DFV+
Sbjct: 1129 KTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVR 1188

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+++PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF  D+TCIFNDDNA
Sbjct: 1189 SYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNA 1248

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMN++ PKG+ +D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+N
Sbjct: 1249 EKLILRIRIMNEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVN 1308

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFD+NEGF   QEWMLDTEGVN+LAV+CH+DVDA RTTSNHLIE+IEVLGIEAVR++LLD
Sbjct: 1309 KFDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLD 1368

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1369 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1428

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DA++FAE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSY++G+DF M+
Sbjct: 1429 DASVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVDGLDFGMT 1488

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            PS SPV  +P  D MMSP+YL SPNM  SPI+DAQFSPYVGGMAF
Sbjct: 1489 PSRSPVSGTPFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 2588 bits (6708), Expect = 0.0
 Identities = 1271/1486 (85%), Positives = 1383/1486 (93%), Gaps = 2/1486 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+D +FKQAM+++NPK+RL+++LD CKNKTKCEGGD I             KK  GGC
Sbjct: 114  ADEDDPKFKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPKI+IDGMK++AEY+  +KK+D+ +Q MPEPVERKQQL+AERVL+ILKR+SDE+C 
Sbjct: 172  GAQQPKISIDGMKMVAEYKMQKKKSDDPEQ-MPEPVERKQQLSAERVLSILKRVSDEDCL 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P+FARPDWMILQ L        PSVMM+++SRSEDDLTHQLAMIIRHNE LK+QE
Sbjct: 231  LLGLNPEFARPDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL+RYSAWHN+SEKG++T GDTQVRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQQ FS+GIGDTIADA+TMEKINETISNAK KV++
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKE 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI+ AQEK LEAEPGRTMMESFEN+VNQVLNKARDDAG+SA+KSLSESNNLKAMVTAGSK
Sbjct: 711  LIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MD+VWIE+QKLDSLK K+  FDD Y YE D  +W+P+YMLP  +EDLK IRE ++VF+AE
Sbjct: 891  MDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EIA +GDNSWPLPVN++RL+ N QK FKID RRPSDMHPMEIVEA+D
Sbjct: 951  VQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD LS EAQKNATLFFNILLRS LASKRVLKEY L++EAFEW+VGEIE+
Sbjct: 1011 KLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPEVGKTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMST+IEEDV+FVK
Sbjct: 1131 KTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+I PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ 
Sbjct: 1251 EKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQ 1309

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFD+NEGF    EWMLDTEGVN+LAVM HEDVDASRTTSNHLIEVIEVLGIEAVR++LLD
Sbjct: 1310 KFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLD 1369

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1370 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1429

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYME-GVDFAM 1147
            DAA+FAESD+LRGVTENIMLGQLAPIGTG CSLYL+++ML+QAIE+ LPSYME G++F M
Sbjct: 1430 DAAVFAESDHLRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGM 1489

Query: 1146 SPSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            +P  SP+  +P HD MMSP+YL SPNM  SPI DAQFSPYVGGMAF
Sbjct: 1490 TPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535



 Score = 60.5 bits (145), Expect = 9e-06
 Identities = 28/32 (87%), Positives = 30/32 (93%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MD RFPFSPAEVAKV+ VQFGI+SPDEIRQMS
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMS 32


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 2588 bits (6707), Expect = 0.0
 Identities = 1264/1486 (85%), Positives = 1382/1486 (93%), Gaps = 2/1486 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C AGMAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+D +FKQA+K++NPK+RLKR+ D CK+K  C GGD +           VKK+  GGC
Sbjct: 114  ADEDDTKFKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKR--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQP IT+DGMK++AE++AP+KK D+QDQL PEPVERKQ L+AERVLN+LKRISDE+C 
Sbjct: 172  GAQQPNITVDGMKMVAEFKAPKKKTDDQDQL-PEPVERKQILSAERVLNVLKRISDEDCL 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P+FARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI+TEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDPNINID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIR+DGQRLDLRY+K+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDT IEKDVFMN LMWW++FDGKIPAP I KPRPIWTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTLIEKDVFMNTLMWWQDFDGKIPAPAILKPRPIWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINLIR+SAWH+E+E GF+T GDT VRIEKGE+L GTLCKK+LG+ SGSLIHV
Sbjct: 591  FNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQQGFS+GIGDTIADAATMEKINETIS AK +V++
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKE 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++AQ+K LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAQDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIESQKLDSLKMK+ EFD+ ++YE D ++W PNYMLP +++DLK+IREF+NVF AE
Sbjct: 891  MDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EI  +GDNSWP+PVNLKRLIWN QK FKID RRPSDMHPMEIVEAID
Sbjct: 951  VQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAID 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LTKEAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+
Sbjct: 1131 KTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVR 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDEDI PD+ISPWLLRIELNREMM+DKKLSMADIAEKIN EF DD++CIFNDDNA
Sbjct: 1191 SYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILRIRI NDDAPKGE++D + EDD FLK+IE NMLT+M+LRGIPDINKVFIK  K+N
Sbjct: 1251 DKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVN 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFD++EGF    EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLD
Sbjct: 1311 KFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+D LRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+
Sbjct: 1431 DAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPI-ADAQFSPYVGGMAF 1012
            P+ SP+  +P H+ MMSPSYL SPN+ +SPI  DA FSPYVG MAF
Sbjct: 1491 PARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 2588 bits (6707), Expect = 0.0
 Identities = 1271/1486 (85%), Positives = 1383/1486 (93%), Gaps = 2/1486 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+K VLSILRCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+D +FKQAM+++NPK+RL+++LD CKNKTKCEGGD I             KK  GGC
Sbjct: 114  ADEDDPKFKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPKI+IDGMK++AEY+  +KK+D+ +Q MPEPVERKQQL+AERVL+ILKR+SDE+C 
Sbjct: 172  GAQQPKISIDGMKMVAEYKMQKKKSDDPEQ-MPEPVERKQQLSAERVLSILKRVSDEDCL 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P+FARPDWMILQ L        PSVMM+++SRSEDDLTHQLAMIIRHNE LK+QE
Sbjct: 231  LLGLNPEFARPDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFH+ATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL+RYSAWHN+SEKG++T GDTQVRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQQ FS+GIGDTIADA+TMEKINETISNAK KV++
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKE 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI+ AQEK LEAEPGRTMMESFEN+VNQVLNKARDDAG+SA+KSLSESNNLKAMVTAGSK
Sbjct: 711  LIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MD+VWIE+QKLDSLK K+  FDD Y YE D  +W+P+YMLP  +EDLK IRE ++VF+AE
Sbjct: 891  MDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EIA +GDNSWPLPVN++RL+ N QK FKID RRPSDMHPMEIVEA+D
Sbjct: 951  VQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD LS EAQKNATLFFNILLRS LASKRVLKEY L++EAFEW+VGEIE+
Sbjct: 1011 KLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPEVGKTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMST+IEEDV+FVK
Sbjct: 1131 KTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+I PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ 
Sbjct: 1251 EKLILRIRIMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQ 1309

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFD+NEGF    EWMLDTEGVN+LAVM HEDVDASRTTSNHLIEVIEVLGIEAVR++LLD
Sbjct: 1310 KFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLD 1369

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1370 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1429

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYME-GVDFAM 1147
            DAA+FAESD+LRGVTENIMLGQLAPIGTG CSLYL+++ML+QAIE+ LPSYME G++F M
Sbjct: 1430 DAAVFAESDHLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGM 1489

Query: 1146 SPSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            +P  SP+  +P HD MMSP+YL SPNM  SPI DAQFSPYVGGMAF
Sbjct: 1490 TPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535



 Score = 60.5 bits (145), Expect = 9e-06
 Identities = 28/32 (87%), Positives = 30/32 (93%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MD RFPFSPAEVAKV+ VQFGI+SPDEIRQMS
Sbjct: 1    MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMS 32


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score = 2587 bits (6706), Expect = 0.0
 Identities = 1265/1485 (85%), Positives = 1384/1485 (93%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRKLKCE+C A MAECPGHFGHLELAKPM+HIGFLKTVL+I+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE DH+FKQA++++NPK+RLK++LD CKNK+KCEGGD I             KK  GGC
Sbjct: 114  ADENDHKFKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPKITI+GMK+IAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKITIEGMKMIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE LK+QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NG+PAHI++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFI KDVFMNILMWWE+FDGK+PAP I KP P+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINLIRYS+WH+ESE+G +T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TME IN+TIS AK KV+Q
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQ 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI +AQEKKLEAEPGRTMM+SFEN+VNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIREAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIE+QKLDSLKMK+ EFD  ++YEFD ++W P YML   +EDLK+IREF+NVF AE
Sbjct: 891  MDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QL  EIA +GD+S PLPVNLKRLIWN QK FK+D RRPSDMHPMEIVEAID
Sbjct: 951  VQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAID 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPG+D LSQEAQKNATL FNILLRST ASKRVL+EY L++EAFEW+VGEIE+
Sbjct: 1011 KLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+I
Sbjct: 1071 RFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYL+ +VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEED DFVK
Sbjct: 1131 KTPSLSVYLRSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ 
Sbjct: 1251 EKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQ 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFDEN+GF P++EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLD
Sbjct: 1311 KFDENQGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+
Sbjct: 1431 DAAVYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SP+  +P H+ +MSPSYL SPN+  SP +DAQFSPYVGGMAF
Sbjct: 1491 PARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 29/32 (90%), Positives = 31/32 (96%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MD RFPFSPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMS 32


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 2586 bits (6702), Expect = 0.0
 Identities = 1263/1486 (84%), Positives = 1381/1486 (92%), Gaps = 2/1486 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C AGMAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+D +FKQA+K++NPK+RLKR+ D CK+K  C GGD +           VKK+  GGC
Sbjct: 114  ADEDDTKFKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKR--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQP IT+DGMK++AE++AP+KK D+QDQL PEPVERKQ L+AERVLN+LKRISDE+C 
Sbjct: 172  GAQQPNITVDGMKMVAEFKAPKKKTDDQDQL-PEPVERKQILSAERVLNVLKRISDEDCL 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P+FARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI+TEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDPNINID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIR+DGQRLDLRY+K+SSD HL+LGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIREDGQRLDLRYVKKSSDQHLDLGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWW++FDGKIPAP I KPRPIWTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINLIR+SAWH+E+E GF+T GDT VRIEKGE+L GTLCKK+LG+ SGSLIHV
Sbjct: 591  FNLIIPKQINLIRFSAWHSETETGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQQGFS+GIGDTIADAATMEKINETIS AK +V++
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISKAKNEVKE 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++A E  LEAEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAHENHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIESQKLDSLKMK+ EFD+ ++YE D ++W PNYMLP +++DLK+IREF+NVF AE
Sbjct: 891  MDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EI  +GDNSWP+PVNLKRLIWN QK FKID RRPSDMHPMEIVEAID
Sbjct: 951  VQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAID 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD +S EAQKNATLFFNILLRST ASKRVLKEY LTKEAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+
Sbjct: 1131 KTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVR 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDEDI PD+ISPWLLRIELNREMM+DKKLSMADIAEKIN EF DD++CIFNDDNA
Sbjct: 1191 SYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILRIRI NDDAPKGE++D + EDD FLK+IE NMLT+M+LRGIPDINKVFIK  K+N
Sbjct: 1251 DKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVN 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFD++EGF    EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLD
Sbjct: 1311 KFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+D LRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+
Sbjct: 1431 DAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPI-ADAQFSPYVGGMAF 1012
            P+ SP+  +P H+ MMSPSYL SPN+ +SPI  DA FSPYVG MAF
Sbjct: 1491 PARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 2586 bits (6702), Expect = 0.0
 Identities = 1266/1485 (85%), Positives = 1382/1485 (93%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            D RLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGFLKTVLSI+RCVCFNCS+IL
Sbjct: 54   DLRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADEEDH+FKQA+K+KNPK+RLK++LD CKNKTKCEGGD I             KK  GGC
Sbjct: 114  ADEEDHKFKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQP++TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISD++C+
Sbjct: 172  GAQQPRMTIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDDDCR 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LGF+P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE LKKQE
Sbjct: 231  LLGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            K GAPAHI++EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  KGGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINLIR +AWH++SE+G +T GDT VRIEKGE+L GT+CKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ GFS+GIGDTIADAATMEKINETISNAK  V++
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKE 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI KAQ K+LE +PGRTMMESFEN+VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIRKAQNKELEPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIESQKLDSLKMK+ EFD  +KYE D ++W+P YM   +I+DLK+IRE ++VF+AE
Sbjct: 891  MDAVWIESQKLDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QLG EIA +GD+SWPLPVNL+RLIWN QK FK+D RRPSD+HPME VEA+D
Sbjct: 951  VQKLEADRYQLGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD LS EAQKNATLFF ILLRSTLASKRVL++Y LT+EAF+W++GEIE+
Sbjct: 1011 KLQERLKVVPGDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLS++L PE  KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVK
Sbjct: 1131 KTPSLSIFLIPECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+ISP++ISPWLLRIELNREMMVDKKL+MADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEISPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K++
Sbjct: 1251 EKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVS 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFDENEGF   +EWMLDTEGVN+LAVMC+E+VDA RTTSNHLIEVIEVLGIEAVR++LLD
Sbjct: 1311 KFDENEGFKTIEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+DYLRGVTENIMLGQLAPIGTG C+LYL+D ML+ AIELQLPSYM+G+DF M+
Sbjct: 1431 DAAVYAEADYLRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMT 1490

Query: 1143 PSMSPV-LSPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SPV ++P HD MMSPSYL SP++  SP  DAQFSPYV GM F
Sbjct: 1491 PARSPVSVTPYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535



 Score = 61.2 bits (147), Expect = 5e-06
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MD RFP+SPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMS 32


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score = 2585 bits (6700), Expect = 0.0
 Identities = 1262/1485 (84%), Positives = 1376/1485 (92%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+DH+FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            KKK  GGC
Sbjct: 114  ADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKK--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK+TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ 
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MD+VWIESQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AE
Sbjct: 891  MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+D
Sbjct: 951  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVK
Sbjct: 1131 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  
Sbjct: 1251 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTT 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            K+D+NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLD
Sbjct: 1311 KYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA+FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+
Sbjct: 1431 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1491 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score = 63.5 bits (153), Expect = 1e-06
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMS 32


>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 2584 bits (6697), Expect = 0.0
 Identities = 1264/1485 (85%), Positives = 1382/1485 (93%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRKLKCE+C A MAECPGHFGHLELAKPM+HIGFLKTVL+I+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE DH+FKQA++++NPK+RLK++LD CKNK+KCEGGD I             KK  GGC
Sbjct: 114  ADENDHKFKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPKITI+GMKIIAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKITIEGMKIIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE LK+QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NG+PAHI++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFI KDVFMN LMWWE+FDGK+P PTI KP P+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPK INLIRYS+WH+ESE+G +T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKPINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TME IN+TIS AK KV+Q
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQ 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI  AQEKKLEAEPGRTMM+SFEN+VNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIRDAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIE+QKLDSLKMK+ EFD  ++YEFD ++W P YML   +EDLK+IREF+NVF AE
Sbjct: 891  MDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QL  EIA +GD+S PLPVNLKRLIWN QK FK+D RRPSDMHPMEIVEAID
Sbjct: 951  VQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAID 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERLRVVPG+D LSQEAQKNATL FNILLRST ASKRVL+EY L++EAFEW+VGEIE+
Sbjct: 1011 KLQERLRVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+I
Sbjct: 1071 RFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYL P+VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDP+PMSTII+EDVDFVK
Sbjct: 1131 KTPSLSVYLNPDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ 
Sbjct: 1251 EKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQ 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFDE+EGF P++EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLD
Sbjct: 1311 KFDESEGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+
Sbjct: 1431 DAAVYAETDHLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SP+  +P H+ +MSPSYL SPN+  SP +DAQFSPYVGGMAF
Sbjct: 1491 PARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 29/32 (90%), Positives = 31/32 (96%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MD RFPFSPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMS 32


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score = 2583 bits (6695), Expect = 0.0
 Identities = 1261/1485 (84%), Positives = 1375/1485 (92%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+DH+FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGC
Sbjct: 114  ADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK+TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ 
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MD+VWIESQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AE
Sbjct: 891  MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+D
Sbjct: 951  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVK
Sbjct: 1131 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  
Sbjct: 1251 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTT 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            K+D+NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLD
Sbjct: 1311 KYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA+FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+
Sbjct: 1431 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1491 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score = 63.5 bits (153), Expect = 1e-06
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMS 32


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score = 2583 bits (6695), Expect = 0.0
 Identities = 1261/1485 (84%), Positives = 1375/1485 (92%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+DH+FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGC
Sbjct: 114  ADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK+TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ 
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MD+VWIESQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AE
Sbjct: 891  MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+D
Sbjct: 951  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVK
Sbjct: 1131 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  
Sbjct: 1251 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTT 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            K+D+NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLD
Sbjct: 1311 KYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA+FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+
Sbjct: 1431 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1491 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score = 63.5 bits (153), Expect = 1e-06
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMS 32


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score = 2583 bits (6695), Expect = 0.0
 Identities = 1261/1485 (84%), Positives = 1375/1485 (92%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+DH+FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGC
Sbjct: 114  ADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK+TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ 
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MD+VWIESQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AE
Sbjct: 891  MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+D
Sbjct: 951  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVK
Sbjct: 1131 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  
Sbjct: 1251 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTT 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            K+D+NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLD
Sbjct: 1311 KYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA+FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+
Sbjct: 1431 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1491 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score = 63.5 bits (153), Expect = 1e-06
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMS 32


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score = 2583 bits (6695), Expect = 0.0
 Identities = 1261/1485 (84%), Positives = 1375/1485 (92%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+R VCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+DH+FKQA+K++NPK+RLK++LD CKNKTKCEGGD I            K K  GGC
Sbjct: 114  ADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK+TI+GMK+IAEY+A RKK D+Q+QL PEPVERKQ LTAERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NGAPAHI++EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+P PTI KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL R +AWH +++KG LT GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA TME IN+TIS AK  V+ 
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI++AQ+K LE EPGRTMMESFEN+VNQVLN ARD+AG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MD+VWIESQ LDSLKMK+ EFD  +++E D+++W+PNYML  YI+DLK+I+E ++VF+AE
Sbjct: 891  MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLEADR QL  EIA SGD+SWPLPVNLKRLIWN QK FK+DPRRPSDMHPME+VEA+D
Sbjct: 951  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPG+D LS EAQKNATLFFNILLRST ASKRVLKE+ LT+EAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVK
Sbjct: 1131 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            +KLILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  
Sbjct: 1251 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTT 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            K+D+NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLD
Sbjct: 1311 KYDDNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA+FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+
Sbjct: 1431 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P+ SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1491 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535



 Score = 63.5 bits (153), Expect = 1e-06
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MDTRFP+SPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMS 32


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 2580 bits (6688), Expect = 0.0
 Identities = 1264/1485 (85%), Positives = 1379/1485 (92%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVLSI+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
             DE+DH+FKQA+++K+PK+RLK++LD CKNKTKC+GGD I             KK  GGC
Sbjct: 114  VDEDDHKFKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK++I+GMK+ AEY+A RKK+D+Q+QL PEPVERKQ LTAERVL++LKRISDE+ Q
Sbjct: 172  GAQQPKLSIEGMKMNAEYKAQRKKSDDQEQL-PEPVERKQTLTAERVLSVLKRISDEDSQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDWMILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE L++QE
Sbjct: 231  LLGLNPKYARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NG+PAHI++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPE VTPYNIERLKELVE GPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+FDGK+PAP I KPRP+WTGKQV
Sbjct: 531  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINL R SAWH+E+E G +T GDT VRIEKGE+L GTLCKK LG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADAATMEKINETIS AK +V+ 
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKD 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI KAQ K+LEAEPGRTMM+SFEN+VNQVLN+ARDDAG+SAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LISKAQSKQLEAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIPYGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIESQKLDSLKMK+ EFD T+ YE D ++W+P+YML  ++EDLK+IREF+NVF+AE
Sbjct: 891  MDAVWIESQKLDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKLE DR QLG EIA +GDNSWPLPVNLKRLIWN QK FKID RR SDMHPMEIVEAID
Sbjct: 951  VQKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAID 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD LS EAQKNATLFF+ILLRST ASKRVL EY LT+EAFEW++GEIE+
Sbjct: 1011 KLQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+I
Sbjct: 1071 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPE  KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFV 
Sbjct: 1131 KTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVN 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+++PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMN +APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+N
Sbjct: 1251 EKLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVN 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFD NEGF   QEWMLDTEGVN+LAV+CH+DVDA RTTSNHLIE++E+LGIEAVR++LLD
Sbjct: 1311 KFDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA+FAE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+
Sbjct: 1431 DAAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMT 1490

Query: 1143 PSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            PS SPV  +P H+ MMSP+YL SPN+  SPI+DAQFSPYVGGMAF
Sbjct: 1491 PSRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score = 2580 bits (6687), Expect = 0.0
 Identities = 1265/1485 (85%), Positives = 1380/1485 (92%), Gaps = 1/1485 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFG+LELAKPM+HIGFLKTVLSI+RCVCFNCS+IL
Sbjct: 54   DPRLGTIDRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKIL 113

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
            ADE+DH+FKQA+++K+PK+RL+++LD CKNKTKCEGGD I             KK  GGC
Sbjct: 114  ADEQDHKFKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPV--KKSRGGC 171

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPKITI+GMK+IAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL +LKRISDE+CQ
Sbjct: 172  GAQQPKITIEGMKMIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVLGVLKRISDEDCQ 230

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAMIIRHNETLKKQE 4744
            +LG +P++ARPDW+ILQVL        PSVMM+++SRSEDDLTHQLAMIIRHNE LK+QE
Sbjct: 231  LLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQE 290

Query: 4743 KNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 4564
            +NG+PAHI++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNL
Sbjct: 291  RNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNL 350

Query: 4563 MGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHPPP 4384
            MGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERLKELVEYGPHPPP
Sbjct: 351  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 410

Query: 4383 GKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 4204
            GKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG
Sbjct: 411  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 470

Query: 4203 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 4024
            HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N
Sbjct: 471  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 530

Query: 4023 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTIYKPRPIWTGKQV 3844
            RPVMGIVQD+LLGCRKITKRDTFI KDVFMNILMWWE+FDGK+P PTI KP P+WTGKQV
Sbjct: 531  RPVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQV 590

Query: 3843 FNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKKTLGSSSGSLIHV 3664
            FNLIIPKQINLIRYS+WHNE+EKG +T GDT VRIEKGE+L GTLCKKTLG+S+GSLIHV
Sbjct: 591  FNLIIPKQINLIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHV 650

Query: 3663 IWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKINETISNAKVKVQQ 3484
            IWEEVGPDAARKFLGHTQWLVNYWLLQ  FS+GIGDTIADA+TME IN+TIS AK KV+Q
Sbjct: 651  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQ 710

Query: 3483 LIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSK 3304
            LI +AQEKKLEAEPGRTMMESFEN+VNQ LN+ARDDAGNSAQKSLSESNNLKAMVTAGSK
Sbjct: 711  LIREAQEKKLEAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSK 770

Query: 3303 GSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFVENSYLRGLTPQE 3124
            GSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE
Sbjct: 771  GSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 830

Query: 3123 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 2944
            FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG
Sbjct: 831  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 890

Query: 2943 MDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLKSIREFQNVFNAE 2764
            MDAVWIE+QKLDSLKMK+ +FD  ++YEFD ++W P YML   +EDLK+IREF+NVF AE
Sbjct: 891  MDAVWIETQKLDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAE 950

Query: 2763 VQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPSDMHPMEIVEAID 2584
            VQKL+ADR QL  EIA +GD+S PLPVNLKRLIWN QK FK+D RRPSDMHPMEIVEAID
Sbjct: 951  VQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAID 1010

Query: 2583 KLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTKEAFEWIVGEIEA 2404
            KLQERL+VVPGDD LSQEAQKNATL FNILLRST ASKRVL+EY L++EAFEW+VGEIE+
Sbjct: 1011 KLQERLKVVPGDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIES 1070

Query: 2403 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 2224
            RFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+I
Sbjct: 1071 RFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRI 1130

Query: 2223 KTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVK 2044
            KTPSLSVYLKPEV KTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVK
Sbjct: 1131 KTPSLSVYLKPEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVK 1190

Query: 2043 SYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNA 1864
            SYYEMPDE+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNA
Sbjct: 1191 SYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA 1250

Query: 1863 EKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKIN 1684
            EKLILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGI DINKVFIK+ KI 
Sbjct: 1251 EKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQ 1310

Query: 1683 KFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLD 1504
            KFDENEGF P +EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR++LLD
Sbjct: 1311 KFDENEGFKPYEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLD 1370

Query: 1503 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1324
            ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL
Sbjct: 1371 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1430

Query: 1323 DAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMS 1144
            DAA++AE+DYLRGVTENIMLGQLAPIGTG C+L L+D+ML+ AIELQLPSYMEG+DF M+
Sbjct: 1431 DAAVYAETDYLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMT 1490

Query: 1143 PSMSPV-LSPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            P  SP+  +P H+ +MSPSYL SPN+  SP  DAQFSPYVGGMAF
Sbjct: 1491 PGRSPISATPYHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 29/32 (90%), Positives = 31/32 (96%)
 Frame = -3

Query: 5579 MDTRFPFSPAEVAKVKMVQFGIISPDEIRQMS 5484
            MD RFPFSPAEVAKV+MVQFGI+SPDEIRQMS
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMS 32


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score = 2578 bits (6682), Expect = 0.0
 Identities = 1268/1507 (84%), Positives = 1383/1507 (91%), Gaps = 23/1507 (1%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFGHLELAKPM+HIGF+KTVL+I+RCVCFNCS+I+
Sbjct: 47   DPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKIM 106

Query: 5283 ADEEDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXXXXEVKKKPHGGC 5104
             DE+DH+FKQA+K+KNPK++LK++LD CKNK+KCEGGD I             KK  GGC
Sbjct: 107  VDEDDHKFKQALKIKNPKNKLKKILDACKNKSKCEGGDDINVQGQESEEPV--KKSRGGC 164

Query: 5103 GSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVLNILKRISDEECQ 4924
            G+QQPK++IDGMK++AEY++ RKK DEQ+QL PEPVERKQ LTAERVL++LKRISDE+CQ
Sbjct: 165  GAQQPKLSIDGMKMVAEYKSQRKKIDEQEQL-PEPVERKQTLTAERVLSVLKRISDEDCQ 223

Query: 4923 MLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSE--DDLTHQLAMIIRHNETLKK 4750
            +LG +P++ARPDWMILQVL        PSVMM+++SRSE  DDLTHQLAMIIRHNE L++
Sbjct: 224  LLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEASDDLTHQLAMIIRHNENLRR 283

Query: 4749 QEKNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRG 4570
            QE+NG+PAHI++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRG
Sbjct: 284  QERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRG 343

Query: 4569 NLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYGPHP 4390
            NLMGKRVDFSARTVITPDP INID+LGVPWSIALNLTYPE VTPYNIERLKELVEYGPHP
Sbjct: 344  NLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 403

Query: 4389 PPGKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYK--------------------VERH 4270
            PPGKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYK                    VERH
Sbjct: 404  PPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKARLPILLLLLLFLGPWSGSVVERH 463

Query: 4269 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 4090
            LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF
Sbjct: 464  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 523

Query: 4089 ETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEE 3910
            ETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE+
Sbjct: 524  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 583

Query: 3909 FDGKIPAPTIYKPRPIWTGKQVFNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKG 3730
            FDGK+PAP I KPRP+WTGKQVFNLIIPKQINL R SAWH ESE G++T GDT VRIEKG
Sbjct: 584  FDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLNRTSAWHAESESGYITPGDTLVRIEKG 643

Query: 3729 EVLCGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTI 3550
            E+L GTLCKKTLG+SSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ GFS+GIGDTI
Sbjct: 644  ELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTI 703

Query: 3549 ADAATMEKINETISNAKVKVQQLIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAG 3370
            ADA+TMEKINETIS AK  V++LI KAQ K+LEAEPGRTMMESFEN+VNQVLNKARDDAG
Sbjct: 704  ADASTMEKINETISRAKNDVKELIRKAQAKELEAEPGRTMMESFENKVNQVLNKARDDAG 763

Query: 3369 NSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKD 3190
            +SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF  RTLPHFTKD
Sbjct: 764  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKD 823

Query: 3189 DKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 3010
            D GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV
Sbjct: 824  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 883

Query: 3009 KYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNY 2830
            KYDGTVRNSLGDVIQFLYGEDGMD+VWIESQKLDSLKMK+ EF+  ++YEFD ++W+P Y
Sbjct: 884  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKTEFERVFRYEFDNETWNPTY 943

Query: 2829 MLPVYIEDLKSIREFQNVFNAEVQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQK 2650
            MLP ++EDLK+IREF+NVF+AEVQKLE+DR QLG EIA +GDNSWPLPVNLKRLI N QK
Sbjct: 944  MLPEHVEDLKTIREFRNVFDAEVQKLESDRLQLGTEIATTGDNSWPLPVNLKRLIQNAQK 1003

Query: 2649 LFKIDPRRPSDMHPMEIVEAIDKLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASK 2470
             FKID RR SDMHPMEIVEAIDKLQERL+VVPG+D LS EAQKNATLFFNILLRST ASK
Sbjct: 1004 TFKIDFRRTSDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1063

Query: 2469 RVLKEYHLTKEAFEWIVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 2290
            RVL+EY LT+E FEW++GEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV
Sbjct: 1064 RVLEEYRLTREGFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1123

Query: 2289 SAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEA 2110
            SAKNVTLGVPRLREIINVAK+IKTPSLSV+LKPE  KTKERAK VQCALEYTTLRSVT+A
Sbjct: 1124 SAKNVTLGVPRLREIINVAKRIKTPSLSVFLKPEASKTKERAKTVQCALEYTTLRSVTQA 1183

Query: 2109 TEVWYDPDPMSTIIEEDVDFVKSYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMAD 1930
            TEVWYDPDPMSTII+EDVDFV+SYYEMPDE+I+PD+ISPWLLRIELNREMMVDKKLSMAD
Sbjct: 1184 TEVWYDPDPMSTIIDEDVDFVRSYYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMAD 1243

Query: 1929 IAEKINHEFKDDITCIFNDDNAEKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNML 1750
            IAEKIN EF DD+TCIFNDDNAEKLILRIRIMND+APKG++ D   EDD FLK+IESNML
Sbjct: 1244 IAEKINVEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGDLTDEAAEDDVFLKKIESNML 1303

Query: 1749 TDMSLRGIPDINKVFIKSVKINKFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTT 1570
            T+MSLRGIPDINKVFIK  K+NKFDEN+GF P  EWMLDTEGVN+LAV+CHEDVDA RTT
Sbjct: 1304 TEMSLRGIPDINKVFIKHGKVNKFDENDGFKPENEWMLDTEGVNLLAVICHEDVDAKRTT 1363

Query: 1569 SNHLIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1390
            SNHLIEVIEVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG
Sbjct: 1364 SNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1423

Query: 1389 INRNDTGPMMRCSFEETVDILLDAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDK 1210
            INRNDTGPMMRCSFEETVDILLDAA++AE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+
Sbjct: 1424 INRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGGCALYLNDE 1483

Query: 1209 MLQQAIELQLPSYMEGVDFAMSPSMSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSP 1033
            ML+ AIELQLPSYM+G+DF M+PS SPV  +P H+ MMSP YL SPN+  SPI+DAQFSP
Sbjct: 1484 MLKNAIELQLPSYMDGLDFGMTPSRSPVSGTPYHEGMMSPGYLLSPNLRLSPISDAQFSP 1543

Query: 1032 YVGGMAF 1012
            YVGGMAF
Sbjct: 1544 YVGGMAF 1550


>ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
            gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1864

 Score = 2577 bits (6680), Expect = 0.0
 Identities = 1266/1497 (84%), Positives = 1380/1497 (92%), Gaps = 13/1497 (0%)
 Frame = -2

Query: 5463 DPRLGTIDRKLKCESCAAGMAECPGHFGHLELAKPMYHIGFLKTVLSILRCVCFNCSRIL 5284
            DPRLGTIDRK+KCE+C A MAECPGHFG+LELAKPM+HIGFLKTVLSI+RCVCFNCS+IL
Sbjct: 60   DPRLGTIDRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKIL 119

Query: 5283 ADE------------EDHRFKQAMKVKNPKHRLKRVLDCCKNKTKCEGGDSIXXXXXXXX 5140
            ADE             DH+FKQAM++KNPKHRL+++LD CKNKTKCEGGD I        
Sbjct: 120  ADEVLSRPFKPVLLINDHKFKQAMRIKNPKHRLRKILDACKNKTKCEGGDDIDLPEHDTK 179

Query: 5139 XXEVKKKPHGGCGSQQPKITIDGMKIIAEYRAPRKKADEQDQLMPEPVERKQQLTAERVL 4960
                 KK  GGCG+QQPKITI+GMK+IAEY+A RKK+D+Q+QL PEPVERKQ L+AERVL
Sbjct: 180  EPL--KKSRGGCGAQQPKITIEGMKMIAEYKAQRKKSDDQEQL-PEPVERKQTLSAERVL 236

Query: 4959 NILKRISDEECQMLGFDPQFARPDWMILQVLXXXXXXXXPSVMMNSTSRSEDDLTHQLAM 4780
             +LKRISDE+CQ+LG +P++ARPDW+ILQVL        PSVMM+++SRSEDDLTHQLAM
Sbjct: 237  GVLKRISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAM 296

Query: 4779 IIRHNETLKKQEKNGAPAHIVTEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSR 4600
            IIRHNE LK+QE+NG+PAHI++EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSR
Sbjct: 297  IIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSR 356

Query: 4599 LKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERL 4420
            LKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPE VTPYNIERL
Sbjct: 357  LKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL 416

Query: 4419 KELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFN 4240
            KELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK+SSDHHLELGYKVERHLNDGDFVLFN
Sbjct: 417  KELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFN 476

Query: 4239 RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 4060
            RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM
Sbjct: 477  RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 536

Query: 4059 MVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEEFDGKIPAPTI 3880
            MVPKCIVSPQANRPVMGIVQD+LLGCRKITKRDTFI KDVFMNILMWWE+FDGK+PAPTI
Sbjct: 537  MVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPTI 596

Query: 3879 YKPRPIWTGKQVFNLIIPKQINLIRYSAWHNESEKGFLTLGDTQVRIEKGEVLCGTLCKK 3700
             KP P+WTGKQVFNLIIPKQINLIRYS+WHNE+E+G +T GDT VRIEKGE+L GTLCKK
Sbjct: 597  LKPEPLWTGKQVFNLIIPKQINLIRYSSWHNENERGPITPGDTMVRIEKGELLTGTLCKK 656

Query: 3699 TLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGDTIADAATMEKIN 3520
            TLG+ +GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ FS+GIGDTIADA+TME IN
Sbjct: 657  TLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMETIN 716

Query: 3519 ETISNAKVKVQQLIEKAQEKKLEAEPGRTMMESFENQVNQVLNKARDDAGNSAQKSLSES 3340
            +TIS AK KV+QLI +AQEKKLEAEPGRTMM+SFEN+VNQ LN+ARDDAGNSAQKSLSES
Sbjct: 717  QTISQAKDKVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSES 776

Query: 3339 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRTLPHFTKDDKGPESRGFV 3160
            NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD GPESRGFV
Sbjct: 777  NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFV 836

Query: 3159 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 2980
            ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL
Sbjct: 837  ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 896

Query: 2979 GDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFDDTYKYEFDQDSWSPNYMLPVYIEDLK 2800
            GDVIQFLYGEDGMDAVWIE+QKLDSLKMK+ +FD  ++YEFD ++W P YML   +EDLK
Sbjct: 897  GDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDDENWKPTYMLEEPVEDLK 956

Query: 2799 SIREFQNVFNAEVQKLEADRRQLGIEIAPSGDNSWPLPVNLKRLIWNGQKLFKIDPRRPS 2620
            +IREF+NVF AEVQKL+ADR QL  EIA +GD+S PLPVNLKRLIWN QK FK+D RRPS
Sbjct: 957  TIREFRNVFEAEVQKLDADRVQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPS 1016

Query: 2619 DMHPMEIVEAIDKLQERLRVVPGDDGLSQEAQKNATLFFNILLRSTLASKRVLKEYHLTK 2440
            DMHPMEIVEAIDKLQERLRVVPG+D LSQEAQKNATL FNILLRST ASKRVL+EY L++
Sbjct: 1017 DMHPMEIVEAIDKLQERLRVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSR 1076

Query: 2439 EAFEWIVGEIEARFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 2260
            EAFEW+VGEIE+RFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP
Sbjct: 1077 EAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1136

Query: 2259 RLREIINVAKKIKTPSLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPM 2080
            RLREIINVAK+IKTPSLSVYLKPEV KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM
Sbjct: 1137 RLREIINVAKRIKTPSLSVYLKPEVCKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPM 1196

Query: 2079 STIIEEDVDFVKSYYEMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFK 1900
             TIIEEDVDFVKSYYEMPDE+++ D+ISPWLLRIELNREMMVDKKLSMADIAEKINHEF 
Sbjct: 1197 GTIIEEDVDFVKSYYEMPDEEVALDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFD 1256

Query: 1899 DDITCIFNDDNAEKLILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPD 1720
             D+TCIFNDDNAEKLILRIRIMND+APKG+++D + EDD FLK+IESNMLT+M+LRGIPD
Sbjct: 1257 GDLTCIFNDDNAEKLILRIRIMNDEAPKGDIQDESAEDDVFLKKIESNMLTEMTLRGIPD 1316

Query: 1719 INKVFIKSVKINKFDENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEV 1540
            INKVFIK+ KI KFDENEGF P +EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEV
Sbjct: 1317 INKVFIKNTKIQKFDENEGFKPHEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEV 1376

Query: 1539 LGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1360
            LGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN+TGPMM
Sbjct: 1377 LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNETGPMM 1436

Query: 1359 RCSFEETVDILLDAAMFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQL 1180
            RCSFEETVDILLDAA++AE+D+LRGVTENIMLGQLAPIGTG C+L L+D+ML+ AIELQL
Sbjct: 1437 RCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQL 1496

Query: 1179 PSYMEGVDFAMSPSMSPV-LSPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1012
            PSYMEG+DF M+P  SP+  +P H+ +MSP+YL SPN+  SP  DAQFSPYVGGMAF
Sbjct: 1497 PSYMEGLDFGMTPGRSPISATPYHEGLMSPNYLLSPNLRLSPSNDAQFSPYVGGMAF 1553