BLASTX nr result
ID: Ephedra28_contig00003031
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00003031
(468 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006010506.1| PREDICTED: uncharacterized protein LOC102366... 60 3e-07
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga... 59 9e-07
gb|AAA39398.2| ORF2 [Mus musculus domesticus] 58 1e-06
ref|XP_006010939.1| PREDICTED: uncharacterized protein LOC102354... 57 2e-06
prf||1207289A reverse transcriptase related protein 57 2e-06
ref|XP_006494016.1| PREDICTED: uncharacterized protein LOC102608... 57 3e-06
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626... 57 3e-06
gb|AAC51279.1| putative p150 [Homo sapiens] 57 3e-06
gb|AER41895.1| unknown [Homo sapiens] 56 4e-06
pir||B34087 hypothetical protein (L1H 3' region) - human 56 6e-06
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621... 56 6e-06
ref|WP_000408384.1| Endonuclease, partial [Streptococcus agalact... 56 6e-06
sp|P11369.2|LORF2_MOUSE RecName: Full=LINE-1 retrotransposable e... 55 7e-06
ref|XP_006001235.1| PREDICTED: uncharacterized protein LOC102348... 55 7e-06
gb|AAA67727.1| reverse transcriptase [Mus musculus domesticus] 55 7e-06
gb|AAL17972.1| pORF2 [Mus musculus domesticus] 55 7e-06
ref|WP_000148030.1| Endonuclease [Streptococcus agalactiae] gi|5... 55 1e-05
ref|WP_008930570.1| RNA-directed DNA polymerase, partial [Alcani... 55 1e-05
ref|WP_001897351.1| endonuclease [Helicobacter pylori] gi|393098... 55 1e-05
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 55 1e-05
>ref|XP_006010506.1| PREDICTED: uncharacterized protein LOC102366231 [Latimeria chalumnae]
Length = 1500
Score = 60.1 bits (144), Expect = 3e-07
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Frame = -3
Query: 328 IVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAALNQLP 152
++ + ++ FF K KI+QFL+ V P +S S +L+ T+++ AA+ +LP
Sbjct: 1304 MLLGISQHFASFFKDKQVGKEKIRQFLSSVECPSLSEHESKALQQPITLEEVLAAIAKLP 1363
Query: 151 NHKMPSPDGLTIEFYKKKNWDF--IKHDFYITALANGQFNPSFNEGIITLI 5
+K P P+GL+IEFY+ + H Y L + SF I+TL+
Sbjct: 1364 ANKTPGPNGLSIEFYRALMGIISPLLHQVYNEGLREDRLPNSFKNSILTLL 1414
>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 58.5 bits (140), Expect = 9e-07
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Frame = -3
Query: 373 LFDPVSHSFLADPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECSNSLENL 194
LFD S ++ + I F +Y+T F+S +P+ ++ L V ++ EC+ L
Sbjct: 373 LFD-ASGTWCEEVDDIECVFTDYFTSIFTSTNPSDVQLNDVLCCVDPVVTEECNTWLLKP 431
Query: 193 FTIQDFSAALNQLPNHKMPSPDGLTIEFYKKKNWDFIKHDF--YITALANGQFNPS-FNE 23
F+ ++ AL+Q+ K P PDG+ FY +K W I D +++++ +G +PS N
Sbjct: 432 FSKEELYVALSQMHPCKAPGPDGMHAIFY-QKFWHIIGDDVTQFVSSILHGSISPSCINH 490
Query: 22 GIITLIP 2
I LIP
Sbjct: 491 TNIALIP 497
>gb|AAA39398.2| ORF2 [Mus musculus domesticus]
Length = 1300
Score = 57.8 bits (138), Expect = 1e-06
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECS-NSLENLFTIQDFSAAL 164
DP I ++YT +S+K +++ +FL+ P N+ + L + + ++ A +
Sbjct: 429 DPEEIQNTIRSFYTRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVI 488
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIK--HDFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG + EFY+ D I H + G SF E ITLIP
Sbjct: 489 NSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIP 544
>ref|XP_006010939.1| PREDICTED: uncharacterized protein LOC102354747 [Latimeria
chalumnae]
Length = 628
Score = 57.4 bits (137), Expect = 2e-06
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Frame = -3
Query: 334 LHIVTAFANYYTDFFSSKHPTSNK-IQQFLN-LVSHPISNECSNSLENLFTIQDFSAALN 161
+ I F+ YY + +S++ S + I+++L+ ++ + ++ +LEN ++++ A++
Sbjct: 46 MEINAEFSKYYEELYSTECEISPQYIKEYLDSMIMQSLDDDGRETLENPISVEEIIQAIS 105
Query: 160 QLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
L + K PSPDG IEFYK+ N + + + +L +G S IITLIP
Sbjct: 106 DLSSGKSPSPDGFLIEFYKRFNNTLAPYLLEVFNESLRDGTLPLSMRNAIITLIP 160
>prf||1207289A reverse transcriptase related protein
Length = 1259
Score = 57.4 bits (137), Expect = 2e-06
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ +FL+ + P ++ E SL T + A +
Sbjct: 402 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAII 461
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LPN K P P+G T EFY++ + + + + G SF E I LIP
Sbjct: 462 NSLPNKKSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIP 517
>ref|XP_006494016.1| PREDICTED: uncharacterized protein LOC102608298 [Citrus sinensis]
Length = 1570
Score = 56.6 bits (135), Expect = 3e-06
Identities = 30/87 (34%), Positives = 48/87 (55%)
Frame = -3
Query: 316 FANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECSNSLENLFTIQDFSAALNQLPNHKMP 137
F+ Y+T+ F++ P ++I L+ +S +S E + SLE FT ++ AL Q+ K P
Sbjct: 323 FSKYFTNLFTTSKPNQDQIAAALSGISRRVSTEMNESLEMPFTPEEVVEALTQMCPTKAP 382
Query: 136 SPDGLTIEFYKKKNWDFIKHDFYITAL 56
PDGL F+ +K+W +K T L
Sbjct: 383 GPDGLPAVFF-QKHWQRVKQGVLSTCL 408
>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
Length = 1452
Score = 56.6 bits (135), Expect = 3e-06
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = -3
Query: 352 SFLADPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECSNSLENLFTIQDFS 173
+++ DP I F ++ F+S +P+ +I + L + +S E + LE FT +D +
Sbjct: 470 NWVDDPEGIEGEFCGFFQQLFTSSNPSQTQISEALKGLLPKVSQEMNTHLEEPFTPEDIT 529
Query: 172 AALNQLPNHKMPSPDGLTIEFYKKKNWDFIKHDFYITAL--ANGQFN-PSFNEGIITLIP 2
AL+++ K P PDGL F+ +K+W + T L N Q S N I LIP
Sbjct: 530 RALSEMCPTKAPGPDGLPAAFF-QKHWQIVGEGLTKTCLHILNEQGTLDSLNHTFIALIP 588
>gb|AAC51279.1| putative p150 [Homo sapiens]
Length = 1275
Score = 56.6 bits (135), Expect = 3e-06
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISN-ECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ FLN + P N E SL T + A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDTFLNTYTLPTLNQEEVESLNRPITGSEIVAII 462
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG T EFY++ + + + + G SF E I LIP
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSTEKEGILPNSFYEASIILIP 518
>gb|AER41895.1| unknown [Homo sapiens]
Length = 1275
Score = 56.2 bits (134), Expect = 4e-06
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ FLN + P ++ E SL T + A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDTFLNTYTLPRLNQEEVESLNRPITGSEIVAII 462
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG T EFY++ + + + + G SF E I LIP
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIP 518
>pir||B34087 hypothetical protein (L1H 3' region) - human
Length = 1280
Score = 55.8 bits (133), Expect = 6e-06
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ +FL+ + P ++ E SL T + A +
Sbjct: 408 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAII 467
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG T EFY++ + + + + G SF E I LIP
Sbjct: 468 NSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIP 523
>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
Length = 2303
Score = 55.8 bits (133), Expect = 6e-06
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECSNSLENLFTIQDFSAALN 161
D + F Y+ + F++ P ++IQ L+ +S ++ ++ LE FT ++ AL+
Sbjct: 357 DQREVEKEFCEYFQNLFTTSSPNQSQIQDALDGISPKVTTNMNHQLEEPFTEEEIVEALH 416
Query: 160 QLPNHKMPSPDGLTIEFYKKKNWDFIKHDFYITA---LANGQFNPSFNEGIITLIP 2
Q+ K P PDGL F+ +K+W ++ T L G + N I LIP
Sbjct: 417 QMSPTKAPGPDGLPAAFF-QKHWQTVRSSVIGTCMHILNEGGNLSALNHTFIALIP 471
>ref|WP_000408384.1| Endonuclease, partial [Streptococcus agalactiae]
gi|527576660|gb|EPT69641.1| endonuclease, partial
[Streptococcus agalactiae CCUG 38383]
Length = 1130
Score = 55.8 bits (133), Expect = 6e-06
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ +FL+ + P ++ E SL T + A +
Sbjct: 258 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIEAII 317
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG T EFY++ + + + + G SF E I LIP
Sbjct: 318 NSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIP 373
>sp|P11369.2|LORF2_MOUSE RecName: Full=LINE-1 retrotransposable element ORF2 protein;
Short=ORF2p; AltName: Full=Long interspersed element-1;
Short=L1; AltName: Full=Retrovirus-related Pol
polyprotein LINE-1; Includes: RecName: Full=Reverse
transcriptase; Includes: RecName: Full=Endonuclease
gi|804788|gb|AAA66024.1| 2855 is the position of the
first start codon in ORF 2; putative [Mus musculus
domesticus]
Length = 1281
Score = 55.5 bits (132), Expect = 7e-06
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECS-NSLENLFTIQDFSAAL 164
DP I ++Y +S+K +++ +FL+ P N+ + L + + ++ A +
Sbjct: 410 DPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVI 469
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIK--HDFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG + EFY+ D I H + G SF E ITLIP
Sbjct: 470 NSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIP 525
>ref|XP_006001235.1| PREDICTED: uncharacterized protein LOC102348922 [Latimeria
chalumnae]
Length = 523
Score = 55.5 bits (132), Expect = 7e-06
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Frame = -3
Query: 358 SHSFLADPLHIVTAFANYYTDFFSSKHPTSNK-IQQFLNLVS-HPISNECSNSLENLFTI 185
S S +P I F YY ++S++ S+ I +FLN V+ H +++E +L+ I
Sbjct: 18 STSITYNPTEINLEFRKYYEKLYASENEASSHYIGEFLNSVALHSLADESCEALDAPIMI 77
Query: 184 QDFSAALNQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIIT 11
+ + A++ L K P PDG IEFYK H D ++ +L S II
Sbjct: 78 NEVTQAISHLSAGKSPGPDGFLIEFYKCFGDILALHLLDSFVESLQGRSLPMSMRNAIII 137
Query: 10 LIP 2
LIP
Sbjct: 138 LIP 140
>gb|AAA67727.1| reverse transcriptase [Mus musculus domesticus]
Length = 1281
Score = 55.5 bits (132), Expect = 7e-06
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECS-NSLENLFTIQDFSAAL 164
DP I ++Y +S+K +++ +FL+ P N+ + L + + ++ A +
Sbjct: 410 DPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVI 469
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIK--HDFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG + EFY+ D I H + G SF E ITLIP
Sbjct: 470 NSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIP 525
>gb|AAL17972.1| pORF2 [Mus musculus domesticus]
Length = 1281
Score = 55.5 bits (132), Expect = 7e-06
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECS-NSLENLFTIQDFSAAL 164
DP I ++Y +S+K +++ +FL+ P N+ + L + + ++ A +
Sbjct: 410 DPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVI 469
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIK--HDFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG + EFY+ D I H + G SF E ITLIP
Sbjct: 470 NSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIP 525
>ref|WP_000148030.1| Endonuclease [Streptococcus agalactiae] gi|527573623|gb|EPT66614.1|
endonuclease [Streptococcus agalactiae CCUG 37742]
Length = 1275
Score = 55.1 bits (131), Expect = 1e-05
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ +FL+ + P ++ E SL T + A +
Sbjct: 403 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIVAII 462
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG T EFY++ + + + + G SF E I LIP
Sbjct: 463 NSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIP 518
>ref|WP_008930570.1| RNA-directed DNA polymerase, partial [Alcanivorax hongdengensis]
gi|407764274|gb|EKF72771.1| RNA-directed DNA polymerase,
partial [Alcanivorax hongdengensis A-11-3]
Length = 991
Score = 55.1 bits (131), Expect = 1e-05
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ +FL+ + P ++ E SL T + A +
Sbjct: 119 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIVAII 178
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG T EFY++ + + + + G SF E I LIP
Sbjct: 179 NSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIP 234
>ref|WP_001897351.1| endonuclease [Helicobacter pylori] gi|393098676|gb|EJB99260.1|
retrovirus-related Pol polyprotein LINE-1 [Helicobacter
pylori Hp P-4]
Length = 1108
Score = 55.1 bits (131), Expect = 1e-05
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = -3
Query: 340 DPLHIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHP-ISNECSNSLENLFTIQDFSAAL 164
DP I T YY +++K ++ +FL+ + P ++ E SL T + A +
Sbjct: 236 DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIVAII 295
Query: 163 NQLPNHKMPSPDGLTIEFYKKKNWDFIKH--DFYITALANGQFNPSFNEGIITLIP 2
N LP K P PDG T EFY++ + + + + G SF E I LIP
Sbjct: 296 NSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIP 351
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 55.1 bits (131), Expect = 1e-05
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Frame = -3
Query: 331 HIVTAFANYYTDFFSSKHPTSNKIQQFLNLVSHPISNECSNSLENLFTIQDFSAALNQLP 152
HI F +Y++ F+S +P+ ++ ++++ ++ E + L F+ + AAL Q+
Sbjct: 386 HIENIFTSYFSSIFTSSNPSDLSLEAVMSVIEPVVTEEHNLKLLEPFSKDEILAALQQMH 445
Query: 151 NHKMPSPDGLTIEFYKKKNWDFIKHDF--YITALANGQFNPS-FNEGIITLIP 2
K P PDG+ + FY ++ W + D +I+ + +G +PS N I LIP
Sbjct: 446 PCKAPGPDGMHVIFY-QRFWHIVGDDVTSFISNILHGHSSPSCVNNTNIALIP 497