BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00002993
         (1103 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004507720.1| PREDICTED: tRNA pseudouridine synthase A, mi...   384   e-104
ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mi...   384   e-104
ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mi...   375   e-101
ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mi...   372   e-100
ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mi...   372   e-100
gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus...   372   e-100
gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus...   372   e-100
emb|CBI18897.3| unnamed protein product [Vitis vinifera]              368   3e-99
gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK...   366   1e-98
ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago trunca...   365   1e-98
ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago trunca...   365   1e-98
ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou...   365   2e-98
ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi...   365   2e-98
gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucum...   364   4e-98
ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mi...   360   4e-97
ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mi...   360   7e-97
ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Popu...   358   2e-96
gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao]               356   8e-96
ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi...   355   1e-95
ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citr...   352   1e-94

>ref|XP_004507720.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X2 [Cicer arietinum]
          Length = 475

 Score =  384 bits (986), Expect = e-104
 Identities = 210/393 (53%), Positives = 265/393 (67%), Gaps = 26/393 (6%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+LP  IR+ G++RVT SFSAK FC
Sbjct: 79   SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGYKRVTASFSAKKFC 134

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIG---RRLE 345
            DRRRY Y++P+FALDP  HRDRE+   S      +V C ECS+RGRKV GL+G   R LE
Sbjct: 135  DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLECSERGRKVEGLVGNSKRNLE 194

Query: 346  DGTI---VNEKVQDEAQPQENPN-SESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAEN 513
               +     +K  D    +E+ N +E +V++E+ N              + SP  G +EN
Sbjct: 195  LEAMDVETTDKGDDNRSNKESINDNEGKVSVEDVNSKTSFETVVSGQD-EVSPLNGGSEN 253

Query: 514  NG-----------------KSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAK 642
            N                    F Y EKE+ERFNKIL  +VGTHNFHNFT R K EDP+AK
Sbjct: 254  NSAVLEEEKVNGEDTPAKRSEFCYGEKERERFNKILKSYVGTHNFHNFTTRIKPEDPSAK 313

Query: 643  RYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRR 822
            R+I+SF+AS+   I G+EFVKC ++GQSFMLHQIRKM+GLAV++MRN APES I +AL+ 
Sbjct: 314  RFIISFDASNTVVIEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQT 373

Query: 823  DMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTE 1002
            D+++T+PTAPEVGL+L E  F +YN KW+  H E+S+K  EK+  +FK K IY+HIASTE
Sbjct: 374  DVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMKFIYSHIASTE 433

Query: 1003 VKEGTVGMWLHSLNQRNYVDFAVAWEEERAKEK 1101
             KEGTVG+WLHSLN RNY D  V  EE  A EK
Sbjct: 434  QKEGTVGLWLHSLNHRNYSDLRVVEEEGVANEK 466


>ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Cicer arietinum]
          Length = 505

 Score =  384 bits (986), Expect = e-104
 Identities = 210/393 (53%), Positives = 265/393 (67%), Gaps = 26/393 (6%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+LP  IR+ G++RVT SFSAK FC
Sbjct: 109  SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGYKRVTASFSAKKFC 164

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIG---RRLE 345
            DRRRY Y++P+FALDP  HRDRE+   S      +V C ECS+RGRKV GL+G   R LE
Sbjct: 165  DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLECSERGRKVEGLVGNSKRNLE 224

Query: 346  DGTI---VNEKVQDEAQPQENPN-SESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAEN 513
               +     +K  D    +E+ N +E +V++E+ N              + SP  G +EN
Sbjct: 225  LEAMDVETTDKGDDNRSNKESINDNEGKVSVEDVNSKTSFETVVSGQD-EVSPLNGGSEN 283

Query: 514  NG-----------------KSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAK 642
            N                    F Y EKE+ERFNKIL  +VGTHNFHNFT R K EDP+AK
Sbjct: 284  NSAVLEEEKVNGEDTPAKRSEFCYGEKERERFNKILKSYVGTHNFHNFTTRIKPEDPSAK 343

Query: 643  RYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRR 822
            R+I+SF+AS+   I G+EFVKC ++GQSFMLHQIRKM+GLAV++MRN APES I +AL+ 
Sbjct: 344  RFIISFDASNTVVIEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQT 403

Query: 823  DMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTE 1002
            D+++T+PTAPEVGL+L E  F +YN KW+  H E+S+K  EK+  +FK K IY+HIASTE
Sbjct: 404  DVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMKFIYSHIASTE 463

Query: 1003 VKEGTVGMWLHSLNQRNYVDFAVAWEEERAKEK 1101
             KEGTVG+WLHSLN RNY D  V  EE  A EK
Sbjct: 464  QKEGTVGLWLHSLNHRNYSDLRVVEEEGVANEK 496


>ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
            [Fragaria vesca subsp. vesca]
          Length = 591

 Score =  375 bits (963), Expect = e-101
 Identities = 196/359 (54%), Positives = 245/359 (68%), Gaps = 5/359 (1%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F +    +P  FVD++NSHL   IR+ G++RVT SF+AK FC
Sbjct: 106  SARTDKGVSAVGQVVSGRFYV----DPPGFVDRLNSHLSPQIRIFGYKRVTASFNAKKFC 161

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR---LE 345
            DRRRY Y++P+FALDP++HRDRES   S       V C ECSDRGRKV GL+G+R   L 
Sbjct: 162  DRRRYVYLIPVFALDPSAHRDRESVKASLGSDEEFVKCLECSDRGRKVGGLMGKRTYQLR 221

Query: 346  DGTIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKS 525
             G   N +   E    ++   ++ +  E  +                  E+   E +G  
Sbjct: 222  GGNSYNSESVTEISTNDDMKIDNDI--EGEDNVVVGNADMNSAEEVNGGEKKAVEGSG-- 277

Query: 526  FSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVK 705
            F Y EKEKERFN+ILS + GTHNFHNFT RTKAEDPAA RYI+SF A+    + G+EFVK
Sbjct: 278  FCYGEKEKERFNRILSCYQGTHNFHNFTTRTKAEDPAAIRYIISFSANATVTVEGIEFVK 337

Query: 706  CTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLF 885
            C V+GQSFMLHQIRK+IGLAV++MRN APES + RAL++D+N+ +PTAPEVGL+L E  F
Sbjct: 338  CEVVGQSFMLHQIRKLIGLAVAIMRNCAPESLLERALQKDVNVNVPTAPEVGLYLDECFF 397

Query: 886  PAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062
             +YN KW   H E+S+KG E +   FK KHIY HI +TE KEG VG+WLHSLN RNY D
Sbjct: 398  SSYNQKWGDTHEEVSMKGYEAEAEAFKMKHIYTHIGATEHKEGVVGLWLHSLNHRNYPD 456


>ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 518

 Score =  372 bits (956), Expect = e-100
 Identities = 207/398 (52%), Positives = 258/398 (64%), Gaps = 37/398 (9%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   VD++NS+LP  IR+ G++RVT SF+AK FC
Sbjct: 75   SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFC 130

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP+ HRDRE+   S      +V C ECS+RGRKV GL+G R     
Sbjct: 131  DRRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLE 190

Query: 340  -----LEDGTIVNEK--VQDEAQPQENPNSESQVNLENPN------KXXXXXXXXXXXXP 480
                 +E G   N    V ++ +   +   ++ +N E+ N                    
Sbjct: 191  LEAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQE 250

Query: 481  KKSPEQGIAENN-----------------GKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609
            + +P  G + NN                 G  F Y EKE+ERFNKIL  FVGTHNFHNFT
Sbjct: 251  EGTPLNGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFT 310

Query: 610  ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789
             RTKAEDPAA+RYI+SF A+    + GVEFVKC V+GQSFMLHQIRKMIGLAV++MRN A
Sbjct: 311  TRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCA 370

Query: 790  PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969
            PES I  AL++D+N+ +PTAPEVGL+L E  F +YN KW+  H ELS+K  EK+  EFK 
Sbjct: 371  PESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFKM 429

Query: 970  KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083
            K+IY+HIASTE KEGTV +WLHSLN RNY D  V  EE
Sbjct: 430  KYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINEE 467


>ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 548

 Score =  372 bits (956), Expect = e-100
 Identities = 207/398 (52%), Positives = 258/398 (64%), Gaps = 37/398 (9%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   VD++NS+LP  IR+ G++RVT SF+AK FC
Sbjct: 105  SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFC 160

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP+ HRDRE+   S      +V C ECS+RGRKV GL+G R     
Sbjct: 161  DRRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLE 220

Query: 340  -----LEDGTIVNEK--VQDEAQPQENPNSESQVNLENPN------KXXXXXXXXXXXXP 480
                 +E G   N    V ++ +   +   ++ +N E+ N                    
Sbjct: 221  LEAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQE 280

Query: 481  KKSPEQGIAENN-----------------GKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609
            + +P  G + NN                 G  F Y EKE+ERFNKIL  FVGTHNFHNFT
Sbjct: 281  EGTPLNGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFT 340

Query: 610  ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789
             RTKAEDPAA+RYI+SF A+    + GVEFVKC V+GQSFMLHQIRKMIGLAV++MRN A
Sbjct: 341  TRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCA 400

Query: 790  PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969
            PES I  AL++D+N+ +PTAPEVGL+L E  F +YN KW+  H ELS+K  EK+  EFK 
Sbjct: 401  PESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFKM 459

Query: 970  KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083
            K+IY+HIASTE KEGTV +WLHSLN RNY D  V  EE
Sbjct: 460  KYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINEE 497


>gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 556

 Score =  372 bits (955), Expect = e-100
 Identities = 205/407 (50%), Positives = 259/407 (63%), Gaps = 46/407 (11%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   VD++NS+L   IR+ G++RVT SF+AK FC
Sbjct: 78   SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFC 133

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP  HRDRE+   S      +V C ECS+RGRKV GL+G R     
Sbjct: 134  DRRRYVYLIPVFALDPCCHRDRETVMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLE 193

Query: 340  -----LEDG----------TIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXX 474
                 +E G          ++V   V+      ++ +   +  ++N  K           
Sbjct: 194  LEAMDVEAGISSNTDVVLDSVVTGDVEASLSKGDDNHLNGESGIDNKGKVLVDGTNLKTG 253

Query: 475  XPKKSPEQ-------GIAENN-----------------GKSFSYSEKEKERFNKILSQFV 582
              K  P Q       G + NN                 G  F Y EKE+ERFNKIL+ FV
Sbjct: 254  IEKGIPVQDEVMPLNGESVNNSDIIEEEKMNGEDKSTSGSMFCYGEKERERFNKILNCFV 313

Query: 583  GTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGL 762
            GTHNFHNFT RTKAEDPAA+RYI+SF A+ AF + G+EFVKC V+GQSFMLHQIRKM+GL
Sbjct: 314  GTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGL 373

Query: 763  AVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGL 942
            AV++MRN APES I +AL++D+N+ +PTAPEVGL+L E  F +YN KW+  H ELS+K  
Sbjct: 374  AVAIMRNCAPESLINKALQQDVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAY 433

Query: 943  EKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083
            EK+  EFK K+IY+HI+ TE KEGTV +WLHSLN RNY D  V  EE
Sbjct: 434  EKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNHRNYPDLRVVNEE 480


>gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris]
            gi|561028256|gb|ESW26896.1| hypothetical protein
            PHAVU_003G157400g [Phaseolus vulgaris]
          Length = 586

 Score =  372 bits (955), Expect = e-100
 Identities = 205/407 (50%), Positives = 259/407 (63%), Gaps = 46/407 (11%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   VD++NS+L   IR+ G++RVT SF+AK FC
Sbjct: 108  SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFC 163

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP  HRDRE+   S      +V C ECS+RGRKV GL+G R     
Sbjct: 164  DRRRYVYLIPVFALDPCCHRDRETVMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLE 223

Query: 340  -----LEDG----------TIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXX 474
                 +E G          ++V   V+      ++ +   +  ++N  K           
Sbjct: 224  LEAMDVEAGISSNTDVVLDSVVTGDVEASLSKGDDNHLNGESGIDNKGKVLVDGTNLKTG 283

Query: 475  XPKKSPEQ-------GIAENN-----------------GKSFSYSEKEKERFNKILSQFV 582
              K  P Q       G + NN                 G  F Y EKE+ERFNKIL+ FV
Sbjct: 284  IEKGIPVQDEVMPLNGESVNNSDIIEEEKMNGEDKSTSGSMFCYGEKERERFNKILNCFV 343

Query: 583  GTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGL 762
            GTHNFHNFT RTKAEDPAA+RYI+SF A+ AF + G+EFVKC V+GQSFMLHQIRKM+GL
Sbjct: 344  GTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGL 403

Query: 763  AVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGL 942
            AV++MRN APES I +AL++D+N+ +PTAPEVGL+L E  F +YN KW+  H ELS+K  
Sbjct: 404  AVAIMRNCAPESLINKALQQDVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAY 463

Query: 943  EKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083
            EK+  EFK K+IY+HI+ TE KEGTV +WLHSLN RNY D  V  EE
Sbjct: 464  EKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNHRNYPDLRVVNEE 510


>emb|CBI18897.3| unnamed protein product [Vitis vinifera]
          Length = 419

 Score =  368 bits (944), Expect = 3e-99
 Identities = 193/373 (51%), Positives = 250/373 (67%), Gaps = 16/373 (4%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   V+++NS+LP  IR+ GF+RVT SF+AK FC
Sbjct: 40   SARTDKGVSAVGQVVSGRFYI----DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFC 95

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRL---- 342
            DRRRY Y++P+FALDP+SH DRES   S      +V C ECS+RGRKV G++G+R     
Sbjct: 96   DRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRKGESK 155

Query: 343  ----------EDGTIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPKKSP 492
                      ++  IVN +VQ+E +   N N     N++  N              K S 
Sbjct: 156  NIVQLGIPSNDEAAIVNSEVQEEIKATSNNN-----NIDANNSISETIKEEAA---KLSS 207

Query: 493  EQGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASD 672
            E       G  F Y +KE+ERFN+IL  +VGTHNFHNFT R KAEDP+A+R+IVSF+ + 
Sbjct: 208  EGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNT 267

Query: 673  AFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAP 852
               + G+EFVKC V+GQSFMLHQIRKMIGLAV++MRN APES +  AL +D+N+ +PTAP
Sbjct: 268  IVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAP 327

Query: 853  EVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWL 1032
            EVGL+L E  F +YN KW+  H E+S+K   ++  EFK KH+Y+HIA+TE KEG V +WL
Sbjct: 328  EVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWL 387

Query: 1033 HSLNQRNYVDFAV 1071
            HSLN RNY D  +
Sbjct: 388  HSLNHRNYPDLCI 400


>gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK33588.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  366 bits (939), Expect = 1e-98
 Identities = 196/398 (49%), Positives = 258/398 (64%), Gaps = 41/398 (10%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+LP  IR+ GF+RVT SFSAK FC
Sbjct: 109  SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFC 164

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP  HRDRE+   S      +V C  CS+RGRKV G++G       
Sbjct: 165  DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLE 224

Query: 340  -----LEDGT-----IVNEKVQDEAQPQENPNSESQVNLENPNK-------XXXXXXXXX 468
                 +E+G+     +V+  V  + +   +   ++ +N E+ N                 
Sbjct: 225  LEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVV 284

Query: 469  XXXPKKSPEQGIAEN-----------------NGKSFSYSEKEKERFNKILSQFVGTHNF 597
                + +P  G +EN                 NG  F Y EKE+ERFN IL  +VGTHNF
Sbjct: 285  SDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNF 344

Query: 598  HNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVM 777
            HNFT R K EDP+AKR+I+SF+AS    + G+EFVKC ++GQSFMLHQIRKM+GLAV++M
Sbjct: 345  HNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIM 404

Query: 778  RNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQIS 957
            RN APES I +AL++D+++T+PTAPEVGL+L E  F +YN KW+  H E+S+K  EK+  
Sbjct: 405  RNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAE 464

Query: 958  EFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071
            +FK ++IY HIASTE KEGTVG+WLHSLN RNY D  +
Sbjct: 465  DFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLGI 502


>ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase
            [Medicago truncatula] gi|388510220|gb|AFK43176.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  365 bits (938), Expect = 1e-98
 Identities = 196/398 (49%), Positives = 258/398 (64%), Gaps = 41/398 (10%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+LP  IR+ GF+RVT SFSAK FC
Sbjct: 109  SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFC 164

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP  HRDRE+   S      +V C  CS+RGRKV G++G       
Sbjct: 165  DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLE 224

Query: 340  -----LEDGT-----IVNEKVQDEAQPQENPNSESQVNLENPNK-------XXXXXXXXX 468
                 +E+G+     +V+  V  + +   +   ++ +N E+ N                 
Sbjct: 225  LEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVV 284

Query: 469  XXXPKKSPEQGIAEN-----------------NGKSFSYSEKEKERFNKILSQFVGTHNF 597
                + +P  G +EN                 NG  F Y EKE+ERFN IL  +VGTHNF
Sbjct: 285  SDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNF 344

Query: 598  HNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVM 777
            HNFT R K EDP+AKR+I+SF+AS    + G+EFVKC ++GQSFMLHQIRKM+GLAV++M
Sbjct: 345  HNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIM 404

Query: 778  RNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQIS 957
            RN APES I +AL++D+++T+PTAPEVGL+L E  F +YN KW+  H E+S+K  EK+  
Sbjct: 405  RNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAE 464

Query: 958  EFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071
            +FK ++IY HIASTE KEGTVG+WLHSLN RNY D  +
Sbjct: 465  DFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRI 502


>ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase
            [Medicago truncatula]
          Length = 530

 Score =  365 bits (938), Expect = 1e-98
 Identities = 196/398 (49%), Positives = 258/398 (64%), Gaps = 41/398 (10%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+LP  IR+ GF+RVT SFSAK FC
Sbjct: 109  SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFC 164

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP  HRDRE+   S      +V C  CS+RGRKV G++G       
Sbjct: 165  DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLE 224

Query: 340  -----LEDGT-----IVNEKVQDEAQPQENPNSESQVNLENPNK-------XXXXXXXXX 468
                 +E+G+     +V+  V  + +   +   ++ +N E+ N                 
Sbjct: 225  LEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVV 284

Query: 469  XXXPKKSPEQGIAEN-----------------NGKSFSYSEKEKERFNKILSQFVGTHNF 597
                + +P  G +EN                 NG  F Y EKE+ERFN IL  +VGTHNF
Sbjct: 285  SDEDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNF 344

Query: 598  HNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVM 777
            HNFT R K EDP+AKR+I+SF+AS    + G+EFVKC ++GQSFMLHQIRKM+GLAV++M
Sbjct: 345  HNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIM 404

Query: 778  RNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQIS 957
            RN APES I +AL++D+++T+PTAPEVGL+L E  F +YN KW+  H E+S+K  EK+  
Sbjct: 405  RNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAE 464

Query: 958  EFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071
            +FK ++IY HIASTE KEGTVG+WLHSLN RNY D  +
Sbjct: 465  DFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRI 502


>ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
            mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  365 bits (936), Expect = 2e-98
 Identities = 200/394 (50%), Positives = 253/394 (64%), Gaps = 37/394 (9%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+L   IR+ G++RVT SF+AK FC
Sbjct: 110  SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFC 165

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP  HRDRES   S      +V C ECS+RGRKV GLIG+R     
Sbjct: 166  DRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVK 225

Query: 340  --------------------------LEDGTIVNEKVQDEAQPQENPNSESQVNLENPNK 441
                                      LED    ++  +  +   EN  +E  V  E   K
Sbjct: 226  TAITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAK 285

Query: 442  XXXXXXXXXXXXPK----KSPEQGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609
                         +    K    G  +++G SF Y E+EK RFN+IL  +VGTHNFHNFT
Sbjct: 286  SESSEMSGLGSDSEIVVSKESVNGKEKSSG-SFKYGEEEKARFNRILKHYVGTHNFHNFT 344

Query: 610  ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789
             RTKAEDPAA+R+IVSF+AS    + G+EFVKC V+GQSFMLHQIRKM+GLAV++MRN A
Sbjct: 345  TRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCA 404

Query: 790  PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969
            PES I +AL++D+N+ +PTAPEVGL+L E LF +YN KW+  H E+S+K  E+   +FK 
Sbjct: 405  PESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFKM 464

Query: 970  KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071
            K IY+HIASTE K+G V +WLHSLN RNY D  V
Sbjct: 465  KQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRV 498


>ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis
            sativus]
          Length = 519

 Score =  365 bits (936), Expect = 2e-98
 Identities = 200/394 (50%), Positives = 253/394 (64%), Gaps = 37/394 (9%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+L   IR+ G++RVT SF+AK FC
Sbjct: 110  SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFC 165

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP  HRDRES   S      +V C ECS+RGRKV GLIG+R     
Sbjct: 166  DRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVK 225

Query: 340  --------------------------LEDGTIVNEKVQDEAQPQENPNSESQVNLENPNK 441
                                      LED    ++  +  +   EN  +E  V  E   K
Sbjct: 226  TAITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAK 285

Query: 442  XXXXXXXXXXXXPK----KSPEQGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609
                         +    K    G  +++G SF Y E+EK RFN+IL  +VGTHNFHNFT
Sbjct: 286  SESSEMSGLGSDSEIVVSKESVNGKEKSSG-SFKYGEEEKARFNRILKHYVGTHNFHNFT 344

Query: 610  ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789
             RTKAEDPAA+R+IVSF+AS    + G+EFVKC V+GQSFMLHQIRKM+GLAV++MRN A
Sbjct: 345  TRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCA 404

Query: 790  PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969
            PES I +AL++D+N+ +PTAPEVGL+L E LF +YN KW+  H E+S+K  E+   +FK 
Sbjct: 405  PESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFKM 464

Query: 970  KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071
            K IY+HIASTE K+G V +WLHSLN RNY D  V
Sbjct: 465  KQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRV 498


>gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo]
          Length = 519

 Score =  364 bits (934), Expect = 4e-98
 Identities = 200/394 (50%), Positives = 256/394 (64%), Gaps = 37/394 (9%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P  FVD++NS+L   IR+ G++RVT SF+AK FC
Sbjct: 110  SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFC 165

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR-LEDG 351
            DRRRY Y++P+FALDP  HRDRES   S      +V C ECS+RGRKV GL+G+R  E  
Sbjct: 166  DRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVK 225

Query: 352  TIVNEK-------------------VQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXX 474
            T + E                    V +++    + N ++ V +EN              
Sbjct: 226  TAITESDISSNIVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVEN-TATELTVASEGIA 284

Query: 475  XPKKSPEQGIAEN----------NGK-----SFSYSEKEKERFNKILSQFVGTHNFHNFT 609
              + S   G+  +          NGK     SF Y E+EK RFN+IL  +VGTHNFHNFT
Sbjct: 285  KSESSEMSGLGNDSEIVVSKESVNGKEKPSGSFKYGEEEKARFNRILKHYVGTHNFHNFT 344

Query: 610  ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789
             RTKAEDPAA+R+IVSF+AS    + G+EFVKC V+GQSFMLHQIRKM+GLAV++MRN A
Sbjct: 345  TRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCA 404

Query: 790  PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969
            PES I +AL++D+N+ +PTAPEVGL+L E LF +YN KW+  H E+S+K  E+   +FK 
Sbjct: 405  PESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEVAEDFKM 464

Query: 970  KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071
            K IY+HIASTE K+G V +WLHSLN RNY D  V
Sbjct: 465  KQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRV 498


>ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum
            lycopersicum]
          Length = 598

 Score =  360 bits (925), Expect = 4e-97
 Identities = 189/358 (52%), Positives = 244/358 (68%), Gaps = 4/358 (1%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F +    +P  F+D++NS L   IR+ GF+RVT +FSAK FC
Sbjct: 105  SARTDKGVSAVGQVVSGRFYV----DPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFC 160

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRLEDGT 354
            D+RRY Y++P+FALDP +HRDRES   S      +V C  C +RGRKV G++GRR+ D  
Sbjct: 161  DKRRYVYLVPVFALDPYAHRDRESVLASLGSGKELVKCLNCPERGRKVAGVMGRRVFDPI 220

Query: 355  IVNEKVQDEAQPQEN-PNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKS-F 528
              +  + D      N P +++ + +EN                +        E   +S F
Sbjct: 221  TQSVIIVDAPVVTANDPTTDTNMIIENEASLSEKVEERIDVVERSDENAKKEEQVEESVF 280

Query: 529  SYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKC 708
             Y EKEKERFN+IL  F GTHNFHNFT RTKA+DPAAKR+I+SF A+    ++G++FVKC
Sbjct: 281  CYGEKEKERFNRILKYFEGTHNFHNFTTRTKADDPAAKRFIISFNANTVVNVDGIDFVKC 340

Query: 709  TVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFP 888
             V+GQSFMLHQIRKMIGLAV++MRN APES I  A RRD+N+ +P APEVGL+L E  F 
Sbjct: 341  EVIGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFFT 400

Query: 889  AYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062
            +YN KW+  H E+S+K   ++  EFK K+IY+HIASTE KEGT+ +WLHSLN RNY D
Sbjct: 401  SYNSKWKDTHEEVSLKAYLEEAEEFKVKYIYSHIASTEQKEGTMAVWLHSLNHRNYPD 458


>ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum
            tuberosum]
          Length = 569

 Score =  360 bits (923), Expect = 7e-97
 Identities = 188/358 (52%), Positives = 244/358 (68%), Gaps = 4/358 (1%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F +    +P  F+D++NS L   IR+ GF+RVT +FSAK FC
Sbjct: 106  SARTDKGVSAVGQVVSGRFYV----DPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFC 161

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRLEDGT 354
            D+RRY Y++P+FALDP +HRDRES   S      +  C  C +RGRKV G++GRR+ D  
Sbjct: 162  DKRRYVYLVPVFALDPYAHRDRESVLASLGSGKELAKCLNCPERGRKVVGVMGRRVFDPI 221

Query: 355  IVNEKVQDEAQPQEN-PNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKS-F 528
              +  + D      N P +++ + +EN                  +    + E   +S F
Sbjct: 222  TQSVIIVDAPVVNANDPTTDTNMVIENEASLSEKVEERNGEVEGSNENAKMEEQVEESVF 281

Query: 529  SYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKC 708
             Y EKEKERFN+IL  + GTHNFHNFT RTKA+DPAAKRYI+SF A+    ++G++FVKC
Sbjct: 282  CYGEKEKERFNRILKYYEGTHNFHNFTTRTKADDPAAKRYIISFNANTVVNVDGIDFVKC 341

Query: 709  TVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFP 888
             V+GQSFMLHQIRKMIGLAV++MRN APES I  A RRD+N+ +P APEVGL+L E  F 
Sbjct: 342  EVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFFT 401

Query: 889  AYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062
            +YN KW+  H E+S+K   ++  EFK K+IY+HIASTE KEGT+ +WLHSLN RNY D
Sbjct: 402  SYNSKWKDTHEEVSLKAYLEEAEEFKMKYIYSHIASTEQKEGTMAVWLHSLNHRNYPD 459


>ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Populus trichocarpa]
            gi|550339814|gb|EEE94755.2| hypothetical protein
            POPTR_0005s26830g [Populus trichocarpa]
          Length = 497

 Score =  358 bits (919), Expect = 2e-96
 Identities = 193/369 (52%), Positives = 255/369 (69%), Gaps = 15/369 (4%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   V++++S+L   IR+ G++RVT SF+AK FC
Sbjct: 109  SARTDKGVSAVGQVVSGRFYI----DPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFC 164

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR-LEDG 351
            DRRRY Y++P+FAL+P SHRDRES   S      +V C +CS+RGRKV G +G+R  E  
Sbjct: 165  DRRRYVYLIPVFALNPCSHRDRESVLASLGSGSELVKCLQCSERGRKVVGAVGKRSFESK 224

Query: 352  TIV-------NEK---VQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPK--KSPE 495
            + V       N+K   ++ E + + + +S S+    NP               K  KS E
Sbjct: 225  SDVSPTEIWSNDKDTTLKSEIKEEVSISSNSEDANANPEIKDEIMVSIENGDDKNTKSEE 284

Query: 496  QGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDA 675
            + I    G  F Y EKEKERFN+IL+ ++G+HNFHNFT RTKAEDP+A+RYI+SF+A   
Sbjct: 285  EAI---KGSGFCYGEKEKERFNRILNYYLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTT 341

Query: 676  FEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPE 855
              + G+EFVKC V+GQSFMLHQIRKMIG+AV++MRN A ES I  AL++++N+ +PTAPE
Sbjct: 342  VAVEGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCASESLIQTALQKNVNINVPTAPE 401

Query: 856  VGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLH 1035
            VGL+L E  F +YN KW+  H ELS+K  E++  EFK KHIY+HIA+TE KEG+V +WLH
Sbjct: 402  VGLYLDECFFTSYNQKWKDSHEELSMKDYEEEAEEFKMKHIYSHIATTEHKEGSVALWLH 461

Query: 1036 SLNQRNYVD 1062
            SLN RNY D
Sbjct: 462  SLNHRNYPD 470


>gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao]
          Length = 507

 Score =  356 bits (914), Expect = 8e-96
 Identities = 190/358 (53%), Positives = 243/358 (67%), Gaps = 4/358 (1%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   V+++N  LP  IR+ G++RVT SF++K FC
Sbjct: 113  SARTDKGVSAVGQVVSGRFYI----DPPGLVERLNRILPAQIRIFGYKRVTASFNSKKFC 168

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRLEDG- 351
            DRRRY Y++P+FALDP+ HRDRES   S      +V C ECS+RGRKV G++G+R  +  
Sbjct: 169  DRRRYVYLIPVFALDPSCHRDRESVLASLGSGNELVKCLECSERGRKVAGVMGKRSFEAK 228

Query: 352  -TIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKSF 528
             TIV+  V        N   E  +  E                 K + E+   E   + F
Sbjct: 229  STIVHSDVSSNNGESGNVIKEHNLTSELEEVTDSSVQNEFTEVDKVNVEKIPLEE--RRF 286

Query: 529  SYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKC 708
             Y E+EK  FN+IL  +VG+HNFHNFT RTKAEDP+A+RYIVSF A+    + G++FVKC
Sbjct: 287  CYGEEEKGLFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIVSFHANTVVNVEGIDFVKC 346

Query: 709  TVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFP 888
             V+GQSFMLHQIRKMIG+AV+VMRN APES I  ALR+D+++ +PTAPEVGL+L E LF 
Sbjct: 347  EVVGQSFMLHQIRKMIGMAVAVMRNCAPESLIETALRKDVSINVPTAPEVGLYLDECLFA 406

Query: 889  AYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062
            +YN KW+  H ELS+K  E++  EFK K IY+HIASTE +EG V +WLHSLN RNY D
Sbjct: 407  SYNQKWKDSHEELSMKAYEEEAEEFKMKFIYSHIASTEREEGVVALWLHSLNHRNYPD 464


>ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
            vinifera]
          Length = 503

 Score =  355 bits (912), Expect = 1e-95
 Identities = 189/400 (47%), Positives = 250/400 (62%), Gaps = 43/400 (10%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   V+++NS+LP  IR+ GF+RVT SF+AK FC
Sbjct: 94   SARTDKGVSAVGQVVSGRFYI----DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFC 149

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339
            DRRRY Y++P+FALDP+SH DRES   S      +V C ECS+RGRKV G++G+R     
Sbjct: 150  DRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRSFESK 209

Query: 340  ------------------------------------LEDGTIVNEKVQDEAQPQENPNSE 411
                                                  DG  +++ +++    Q+N  SE
Sbjct: 210  VSVDDREDVEGESKNIVGAAILKSEAKEESMASSDNRHDGNSISQPIKEGRCFQDNETSE 269

Query: 412  SQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKSFSYSEKEKERFNKILSQFVGTH 591
            S      P+              ++S +       G  F Y +KE+ERFN+IL  +VGTH
Sbjct: 270  S-----TPDSRASAQNEPGVSHSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTH 324

Query: 592  NFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVS 771
            NFHNFT R KAEDP+A+R+IVSF+ +    + G+EFVKC V+GQSFMLHQIRKMIGLAV+
Sbjct: 325  NFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVA 384

Query: 772  VMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQ 951
            +MRN APES +  AL +D+N+ +PTAPEVGL+L E  F +YN KW+  H E+S+K   ++
Sbjct: 385  IMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEE 444

Query: 952  ISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071
              EFK KH+Y+HIA+TE KEG V +WLHSLN RNY D  +
Sbjct: 445  AEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCI 484


>ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citrus clementina]
            gi|557537401|gb|ESR48519.1| hypothetical protein
            CICLE_v10000838mg [Citrus clementina]
          Length = 526

 Score =  352 bits (904), Expect = 1e-94
 Identities = 194/414 (46%), Positives = 256/414 (61%), Gaps = 50/414 (12%)
 Frame = +1

Query: 1    AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180
            +ARTDKGVSA+GQVVSG F I    +P   V+++NS+LP  IR+ G++RVT SF+AK FC
Sbjct: 115  SARTDKGVSAVGQVVSGRFCI----DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170

Query: 181  DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRL---- 342
            D+RRY Y+LP+FALD +SHRDRES   S      +V C ECS+RGRKV G++G+R     
Sbjct: 171  DQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLG 230

Query: 343  ----EDGTIVNEKVQ--------------------------DEAQPQENPNSES------ 414
                ++   +N +V+                           E+   EN NSES      
Sbjct: 231  LPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLV 290

Query: 415  ----QVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENN----GKSFSYSEKEKERFNKIL 570
                   ++N N                + E+ +        G  F Y E+EK+RFN+IL
Sbjct: 291  ESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRIL 350

Query: 571  SQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRK 750
              +VG+HNFHNFT RTKAEDP+A+RYI+SF A     + G++F+KC V+GQSFMLHQIRK
Sbjct: 351  KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410

Query: 751  MIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELS 930
            MIGLAV+V+RN APES I  AL++D+N+ +PTAPEVGL+L E +F +YN KW+  H ELS
Sbjct: 411  MIGLAVAVVRNCAPESLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELS 470

Query: 931  VKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEEERA 1092
            +K  E++   FK KHI++HIA TE KEG V +WLHSLN RNY D      +E A
Sbjct: 471  MKAYEEEAENFKMKHIFSHIARTEQKEGVVALWLHSLNYRNYPDLRFLGNDESA 524