BLASTX nr result
ID: Ephedra28_contig00002993
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra28_contig00002993 (1103 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004507720.1| PREDICTED: tRNA pseudouridine synthase A, mi... 384 e-104 ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mi... 384 e-104 ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mi... 375 e-101 ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mi... 372 e-100 ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mi... 372 e-100 gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus... 372 e-100 gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus... 372 e-100 emb|CBI18897.3| unnamed protein product [Vitis vinifera] 368 3e-99 gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK... 366 1e-98 ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago trunca... 365 1e-98 ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago trunca... 365 1e-98 ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudou... 365 2e-98 ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mi... 365 2e-98 gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucum... 364 4e-98 ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mi... 360 4e-97 ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mi... 360 7e-97 ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Popu... 358 2e-96 gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao] 356 8e-96 ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi... 355 1e-95 ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citr... 352 1e-94 >ref|XP_004507720.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform X2 [Cicer arietinum] Length = 475 Score = 384 bits (986), Expect = e-104 Identities = 210/393 (53%), Positives = 265/393 (67%), Gaps = 26/393 (6%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+LP IR+ G++RVT SFSAK FC Sbjct: 79 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGYKRVTASFSAKKFC 134 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIG---RRLE 345 DRRRY Y++P+FALDP HRDRE+ S +V C ECS+RGRKV GL+G R LE Sbjct: 135 DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLECSERGRKVEGLVGNSKRNLE 194 Query: 346 DGTI---VNEKVQDEAQPQENPN-SESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAEN 513 + +K D +E+ N +E +V++E+ N + SP G +EN Sbjct: 195 LEAMDVETTDKGDDNRSNKESINDNEGKVSVEDVNSKTSFETVVSGQD-EVSPLNGGSEN 253 Query: 514 NG-----------------KSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAK 642 N F Y EKE+ERFNKIL +VGTHNFHNFT R K EDP+AK Sbjct: 254 NSAVLEEEKVNGEDTPAKRSEFCYGEKERERFNKILKSYVGTHNFHNFTTRIKPEDPSAK 313 Query: 643 RYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRR 822 R+I+SF+AS+ I G+EFVKC ++GQSFMLHQIRKM+GLAV++MRN APES I +AL+ Sbjct: 314 RFIISFDASNTVVIEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQT 373 Query: 823 DMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTE 1002 D+++T+PTAPEVGL+L E F +YN KW+ H E+S+K EK+ +FK K IY+HIASTE Sbjct: 374 DVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMKFIYSHIASTE 433 Query: 1003 VKEGTVGMWLHSLNQRNYVDFAVAWEEERAKEK 1101 KEGTVG+WLHSLN RNY D V EE A EK Sbjct: 434 QKEGTVGLWLHSLNHRNYSDLRVVEEEGVANEK 466 >ref|XP_004507719.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform X1 [Cicer arietinum] Length = 505 Score = 384 bits (986), Expect = e-104 Identities = 210/393 (53%), Positives = 265/393 (67%), Gaps = 26/393 (6%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+LP IR+ G++RVT SFSAK FC Sbjct: 109 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGYKRVTASFSAKKFC 164 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIG---RRLE 345 DRRRY Y++P+FALDP HRDRE+ S +V C ECS+RGRKV GL+G R LE Sbjct: 165 DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLECSERGRKVEGLVGNSKRNLE 224 Query: 346 DGTI---VNEKVQDEAQPQENPN-SESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAEN 513 + +K D +E+ N +E +V++E+ N + SP G +EN Sbjct: 225 LEAMDVETTDKGDDNRSNKESINDNEGKVSVEDVNSKTSFETVVSGQD-EVSPLNGGSEN 283 Query: 514 NG-----------------KSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAK 642 N F Y EKE+ERFNKIL +VGTHNFHNFT R K EDP+AK Sbjct: 284 NSAVLEEEKVNGEDTPAKRSEFCYGEKERERFNKILKSYVGTHNFHNFTTRIKPEDPSAK 343 Query: 643 RYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRR 822 R+I+SF+AS+ I G+EFVKC ++GQSFMLHQIRKM+GLAV++MRN APES I +AL+ Sbjct: 344 RFIISFDASNTVVIEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQT 403 Query: 823 DMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTE 1002 D+++T+PTAPEVGL+L E F +YN KW+ H E+S+K EK+ +FK K IY+HIASTE Sbjct: 404 DVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMKFIYSHIASTE 463 Query: 1003 VKEGTVGMWLHSLNQRNYVDFAVAWEEERAKEK 1101 KEGTVG+WLHSLN RNY D V EE A EK Sbjct: 464 QKEGTVGLWLHSLNHRNYSDLRVVEEEGVANEK 496 >ref|XP_004292926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Fragaria vesca subsp. vesca] Length = 591 Score = 375 bits (963), Expect = e-101 Identities = 196/359 (54%), Positives = 245/359 (68%), Gaps = 5/359 (1%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F + +P FVD++NSHL IR+ G++RVT SF+AK FC Sbjct: 106 SARTDKGVSAVGQVVSGRFYV----DPPGFVDRLNSHLSPQIRIFGYKRVTASFNAKKFC 161 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR---LE 345 DRRRY Y++P+FALDP++HRDRES S V C ECSDRGRKV GL+G+R L Sbjct: 162 DRRRYVYLIPVFALDPSAHRDRESVKASLGSDEEFVKCLECSDRGRKVGGLMGKRTYQLR 221 Query: 346 DGTIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKS 525 G N + E ++ ++ + E + E+ E +G Sbjct: 222 GGNSYNSESVTEISTNDDMKIDNDI--EGEDNVVVGNADMNSAEEVNGGEKKAVEGSG-- 277 Query: 526 FSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVK 705 F Y EKEKERFN+ILS + GTHNFHNFT RTKAEDPAA RYI+SF A+ + G+EFVK Sbjct: 278 FCYGEKEKERFNRILSCYQGTHNFHNFTTRTKAEDPAAIRYIISFSANATVTVEGIEFVK 337 Query: 706 CTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLF 885 C V+GQSFMLHQIRK+IGLAV++MRN APES + RAL++D+N+ +PTAPEVGL+L E F Sbjct: 338 CEVVGQSFMLHQIRKLIGLAVAIMRNCAPESLLERALQKDVNVNVPTAPEVGLYLDECFF 397 Query: 886 PAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062 +YN KW H E+S+KG E + FK KHIY HI +TE KEG VG+WLHSLN RNY D Sbjct: 398 SSYNQKWGDTHEEVSMKGYEAEAEAFKMKHIYTHIGATEHKEGVVGLWLHSLNHRNYPD 456 >ref|XP_006575306.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform X2 [Glycine max] Length = 518 Score = 372 bits (956), Expect = e-100 Identities = 207/398 (52%), Positives = 258/398 (64%), Gaps = 37/398 (9%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P VD++NS+LP IR+ G++RVT SF+AK FC Sbjct: 75 SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFC 130 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP+ HRDRE+ S +V C ECS+RGRKV GL+G R Sbjct: 131 DRRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLE 190 Query: 340 -----LEDGTIVNEK--VQDEAQPQENPNSESQVNLENPN------KXXXXXXXXXXXXP 480 +E G N V ++ + + ++ +N E+ N Sbjct: 191 LEAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQE 250 Query: 481 KKSPEQGIAENN-----------------GKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609 + +P G + NN G F Y EKE+ERFNKIL FVGTHNFHNFT Sbjct: 251 EGTPLNGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFT 310 Query: 610 ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789 RTKAEDPAA+RYI+SF A+ + GVEFVKC V+GQSFMLHQIRKMIGLAV++MRN A Sbjct: 311 TRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCA 370 Query: 790 PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969 PES I AL++D+N+ +PTAPEVGL+L E F +YN KW+ H ELS+K EK+ EFK Sbjct: 371 PESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFKM 429 Query: 970 KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083 K+IY+HIASTE KEGTV +WLHSLN RNY D V EE Sbjct: 430 KYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINEE 467 >ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform X1 [Glycine max] Length = 548 Score = 372 bits (956), Expect = e-100 Identities = 207/398 (52%), Positives = 258/398 (64%), Gaps = 37/398 (9%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P VD++NS+LP IR+ G++RVT SF+AK FC Sbjct: 105 SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFC 160 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP+ HRDRE+ S +V C ECS+RGRKV GL+G R Sbjct: 161 DRRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLE 220 Query: 340 -----LEDGTIVNEK--VQDEAQPQENPNSESQVNLENPN------KXXXXXXXXXXXXP 480 +E G N V ++ + + ++ +N E+ N Sbjct: 221 LEAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEESGNDNKGGMNCKTGLETVIPVQE 280 Query: 481 KKSPEQGIAENN-----------------GKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609 + +P G + NN G F Y EKE+ERFNKIL FVGTHNFHNFT Sbjct: 281 EGTPLNGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVGTHNFHNFT 340 Query: 610 ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789 RTKAEDPAA+RYI+SF A+ + GVEFVKC V+GQSFMLHQIRKMIGLAV++MRN A Sbjct: 341 TRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCA 400 Query: 790 PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969 PES I AL++D+N+ +PTAPEVGL+L E F +YN KW+ H ELS+K EK+ EFK Sbjct: 401 PESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYEKEADEFKM 459 Query: 970 KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083 K+IY+HIASTE KEGTV +WLHSLN RNY D V EE Sbjct: 460 KYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINEE 497 >gb|ESW26895.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris] Length = 556 Score = 372 bits (955), Expect = e-100 Identities = 205/407 (50%), Positives = 259/407 (63%), Gaps = 46/407 (11%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P VD++NS+L IR+ G++RVT SF+AK FC Sbjct: 78 SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFC 133 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP HRDRE+ S +V C ECS+RGRKV GL+G R Sbjct: 134 DRRRYVYLIPVFALDPCCHRDRETVMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLE 193 Query: 340 -----LEDG----------TIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXX 474 +E G ++V V+ ++ + + ++N K Sbjct: 194 LEAMDVEAGISSNTDVVLDSVVTGDVEASLSKGDDNHLNGESGIDNKGKVLVDGTNLKTG 253 Query: 475 XPKKSPEQ-------GIAENN-----------------GKSFSYSEKEKERFNKILSQFV 582 K P Q G + NN G F Y EKE+ERFNKIL+ FV Sbjct: 254 IEKGIPVQDEVMPLNGESVNNSDIIEEEKMNGEDKSTSGSMFCYGEKERERFNKILNCFV 313 Query: 583 GTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGL 762 GTHNFHNFT RTKAEDPAA+RYI+SF A+ AF + G+EFVKC V+GQSFMLHQIRKM+GL Sbjct: 314 GTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGL 373 Query: 763 AVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGL 942 AV++MRN APES I +AL++D+N+ +PTAPEVGL+L E F +YN KW+ H ELS+K Sbjct: 374 AVAIMRNCAPESLINKALQQDVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAY 433 Query: 943 EKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083 EK+ EFK K+IY+HI+ TE KEGTV +WLHSLN RNY D V EE Sbjct: 434 EKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNHRNYPDLRVVNEE 480 >gb|ESW26894.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris] gi|561028256|gb|ESW26896.1| hypothetical protein PHAVU_003G157400g [Phaseolus vulgaris] Length = 586 Score = 372 bits (955), Expect = e-100 Identities = 205/407 (50%), Positives = 259/407 (63%), Gaps = 46/407 (11%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P VD++NS+L IR+ G++RVT SF+AK FC Sbjct: 108 SARTDKGVSAVGQVVSGRFYI----DPPGLVDRLNSNLHSQIRIFGYKRVTGSFNAKKFC 163 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP HRDRE+ S +V C ECS+RGRKV GL+G R Sbjct: 164 DRRRYVYLIPVFALDPCCHRDRETVMASLGSTNELVKCLECSERGRKVVGLVGNRKHNLE 223 Query: 340 -----LEDG----------TIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXX 474 +E G ++V V+ ++ + + ++N K Sbjct: 224 LEAMDVEAGISSNTDVVLDSVVTGDVEASLSKGDDNHLNGESGIDNKGKVLVDGTNLKTG 283 Query: 475 XPKKSPEQ-------GIAENN-----------------GKSFSYSEKEKERFNKILSQFV 582 K P Q G + NN G F Y EKE+ERFNKIL+ FV Sbjct: 284 IEKGIPVQDEVMPLNGESVNNSDIIEEEKMNGEDKSTSGSMFCYGEKERERFNKILNCFV 343 Query: 583 GTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGL 762 GTHNFHNFT RTKAEDPAA+RYI+SF A+ AF + G+EFVKC V+GQSFMLHQIRKM+GL Sbjct: 344 GTHNFHNFTTRTKAEDPAARRYIISFNANTAFAVEGIEFVKCEVVGQSFMLHQIRKMMGL 403 Query: 763 AVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGL 942 AV++MRN APES I +AL++D+N+ +PTAPEVGL+L E F +YN KW+ H ELS+K Sbjct: 404 AVAIMRNCAPESLINKALQQDVNINVPTAPEVGLYLDECFFSSYNQKWKDSHEELSMKAY 463 Query: 943 EKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEE 1083 EK+ EFK K+IY+HI+ TE KEGTV +WLHSLN RNY D V EE Sbjct: 464 EKEAEEFKMKYIYSHISFTEQKEGTVALWLHSLNHRNYPDLRVVNEE 510 >emb|CBI18897.3| unnamed protein product [Vitis vinifera] Length = 419 Score = 368 bits (944), Expect = 3e-99 Identities = 193/373 (51%), Positives = 250/373 (67%), Gaps = 16/373 (4%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P V+++NS+LP IR+ GF+RVT SF+AK FC Sbjct: 40 SARTDKGVSAVGQVVSGRFYI----DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFC 95 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRL---- 342 DRRRY Y++P+FALDP+SH DRES S +V C ECS+RGRKV G++G+R Sbjct: 96 DRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRKGESK 155 Query: 343 ----------EDGTIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPKKSP 492 ++ IVN +VQ+E + N N N++ N K S Sbjct: 156 NIVQLGIPSNDEAAIVNSEVQEEIKATSNNN-----NIDANNSISETIKEEAA---KLSS 207 Query: 493 EQGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASD 672 E G F Y +KE+ERFN+IL +VGTHNFHNFT R KAEDP+A+R+IVSF+ + Sbjct: 208 EGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNT 267 Query: 673 AFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAP 852 + G+EFVKC V+GQSFMLHQIRKMIGLAV++MRN APES + AL +D+N+ +PTAP Sbjct: 268 IVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAP 327 Query: 853 EVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWL 1032 EVGL+L E F +YN KW+ H E+S+K ++ EFK KH+Y+HIA+TE KEG V +WL Sbjct: 328 EVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWL 387 Query: 1033 HSLNQRNYVDFAV 1071 HSLN RNY D + Sbjct: 388 HSLNHRNYPDLCI 400 >gb|ACJ85562.1| unknown [Medicago truncatula] gi|388491044|gb|AFK33588.1| unknown [Medicago truncatula] Length = 530 Score = 366 bits (939), Expect = 1e-98 Identities = 196/398 (49%), Positives = 258/398 (64%), Gaps = 41/398 (10%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+LP IR+ GF+RVT SFSAK FC Sbjct: 109 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFC 164 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP HRDRE+ S +V C CS+RGRKV G++G Sbjct: 165 DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLE 224 Query: 340 -----LEDGT-----IVNEKVQDEAQPQENPNSESQVNLENPNK-------XXXXXXXXX 468 +E+G+ +V+ V + + + ++ +N E+ N Sbjct: 225 LEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVV 284 Query: 469 XXXPKKSPEQGIAEN-----------------NGKSFSYSEKEKERFNKILSQFVGTHNF 597 + +P G +EN NG F Y EKE+ERFN IL +VGTHNF Sbjct: 285 SDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNF 344 Query: 598 HNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVM 777 HNFT R K EDP+AKR+I+SF+AS + G+EFVKC ++GQSFMLHQIRKM+GLAV++M Sbjct: 345 HNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIM 404 Query: 778 RNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQIS 957 RN APES I +AL++D+++T+PTAPEVGL+L E F +YN KW+ H E+S+K EK+ Sbjct: 405 RNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAE 464 Query: 958 EFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071 +FK ++IY HIASTE KEGTVG+WLHSLN RNY D + Sbjct: 465 DFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLGI 502 >ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula] gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase [Medicago truncatula] gi|388510220|gb|AFK43176.1| unknown [Medicago truncatula] Length = 530 Score = 365 bits (938), Expect = 1e-98 Identities = 196/398 (49%), Positives = 258/398 (64%), Gaps = 41/398 (10%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+LP IR+ GF+RVT SFSAK FC Sbjct: 109 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFC 164 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP HRDRE+ S +V C CS+RGRKV G++G Sbjct: 165 DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLE 224 Query: 340 -----LEDGT-----IVNEKVQDEAQPQENPNSESQVNLENPNK-------XXXXXXXXX 468 +E+G+ +V+ V + + + ++ +N E+ N Sbjct: 225 LEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVV 284 Query: 469 XXXPKKSPEQGIAEN-----------------NGKSFSYSEKEKERFNKILSQFVGTHNF 597 + +P G +EN NG F Y EKE+ERFN IL +VGTHNF Sbjct: 285 SDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNF 344 Query: 598 HNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVM 777 HNFT R K EDP+AKR+I+SF+AS + G+EFVKC ++GQSFMLHQIRKM+GLAV++M Sbjct: 345 HNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIM 404 Query: 778 RNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQIS 957 RN APES I +AL++D+++T+PTAPEVGL+L E F +YN KW+ H E+S+K EK+ Sbjct: 405 RNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAE 464 Query: 958 EFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071 +FK ++IY HIASTE KEGTVG+WLHSLN RNY D + Sbjct: 465 DFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRI 502 >ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula] gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase [Medicago truncatula] Length = 530 Score = 365 bits (938), Expect = 1e-98 Identities = 196/398 (49%), Positives = 258/398 (64%), Gaps = 41/398 (10%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+LP IR+ GF+RVT SFSAK FC Sbjct: 109 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFC 164 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP HRDRE+ S +V C CS+RGRKV G++G Sbjct: 165 DRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLE 224 Query: 340 -----LEDGT-----IVNEKVQDEAQPQENPNSESQVNLENPNK-------XXXXXXXXX 468 +E+G+ +V+ V + + + ++ +N E+ N Sbjct: 225 LEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKESINDNEGKVSVEEVNSKTVV 284 Query: 469 XXXPKKSPEQGIAEN-----------------NGKSFSYSEKEKERFNKILSQFVGTHNF 597 + +P G +EN NG F Y EKE+ERFN IL +VGTHNF Sbjct: 285 SDEDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYGEKERERFNNILKCYVGTHNF 344 Query: 598 HNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVM 777 HNFT R K EDP+AKR+I+SF+AS + G+EFVKC ++GQSFMLHQIRKM+GLAV++M Sbjct: 345 HNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIM 404 Query: 778 RNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQIS 957 RN APES I +AL++D+++T+PTAPEVGL+L E F +YN KW+ H E+S+K EK+ Sbjct: 405 RNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAE 464 Query: 958 EFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071 +FK ++IY HIASTE KEGTVG+WLHSLN RNY D + Sbjct: 465 DFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRI 502 >ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis sativus] Length = 519 Score = 365 bits (936), Expect = 2e-98 Identities = 200/394 (50%), Positives = 253/394 (64%), Gaps = 37/394 (9%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+L IR+ G++RVT SF+AK FC Sbjct: 110 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFC 165 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP HRDRES S +V C ECS+RGRKV GLIG+R Sbjct: 166 DRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVK 225 Query: 340 --------------------------LEDGTIVNEKVQDEAQPQENPNSESQVNLENPNK 441 LED ++ + + EN +E V E K Sbjct: 226 TAITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAK 285 Query: 442 XXXXXXXXXXXXPK----KSPEQGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609 + K G +++G SF Y E+EK RFN+IL +VGTHNFHNFT Sbjct: 286 SESSEMSGLGSDSEIVVSKESVNGKEKSSG-SFKYGEEEKARFNRILKHYVGTHNFHNFT 344 Query: 610 ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789 RTKAEDPAA+R+IVSF+AS + G+EFVKC V+GQSFMLHQIRKM+GLAV++MRN A Sbjct: 345 TRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCA 404 Query: 790 PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969 PES I +AL++D+N+ +PTAPEVGL+L E LF +YN KW+ H E+S+K E+ +FK Sbjct: 405 PESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFKM 464 Query: 970 KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071 K IY+HIASTE K+G V +WLHSLN RNY D V Sbjct: 465 KQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRV 498 >ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis sativus] Length = 519 Score = 365 bits (936), Expect = 2e-98 Identities = 200/394 (50%), Positives = 253/394 (64%), Gaps = 37/394 (9%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+L IR+ G++RVT SF+AK FC Sbjct: 110 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFC 165 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP HRDRES S +V C ECS+RGRKV GLIG+R Sbjct: 166 DRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVK 225 Query: 340 --------------------------LEDGTIVNEKVQDEAQPQENPNSESQVNLENPNK 441 LED ++ + + EN +E V E K Sbjct: 226 TAITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAK 285 Query: 442 XXXXXXXXXXXXPK----KSPEQGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFT 609 + K G +++G SF Y E+EK RFN+IL +VGTHNFHNFT Sbjct: 286 SESSEMSGLGSDSEIVVSKESVNGKEKSSG-SFKYGEEEKARFNRILKHYVGTHNFHNFT 344 Query: 610 ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789 RTKAEDPAA+R+IVSF+AS + G+EFVKC V+GQSFMLHQIRKM+GLAV++MRN A Sbjct: 345 TRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCA 404 Query: 790 PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969 PES I +AL++D+N+ +PTAPEVGL+L E LF +YN KW+ H E+S+K E+ +FK Sbjct: 405 PESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFKM 464 Query: 970 KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071 K IY+HIASTE K+G V +WLHSLN RNY D V Sbjct: 465 KQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRV 498 >gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo] Length = 519 Score = 364 bits (934), Expect = 4e-98 Identities = 200/394 (50%), Positives = 256/394 (64%), Gaps = 37/394 (9%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P FVD++NS+L IR+ G++RVT SF+AK FC Sbjct: 110 SARTDKGVSAVGQVVSGRFYI----DPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFC 165 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR-LEDG 351 DRRRY Y++P+FALDP HRDRES S +V C ECS+RGRKV GL+G+R E Sbjct: 166 DRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVK 225 Query: 352 TIVNEK-------------------VQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXX 474 T + E V +++ + N ++ V +EN Sbjct: 226 TAITESDISSNIVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVEN-TATELTVASEGIA 284 Query: 475 XPKKSPEQGIAEN----------NGK-----SFSYSEKEKERFNKILSQFVGTHNFHNFT 609 + S G+ + NGK SF Y E+EK RFN+IL +VGTHNFHNFT Sbjct: 285 KSESSEMSGLGNDSEIVVSKESVNGKEKPSGSFKYGEEEKARFNRILKHYVGTHNFHNFT 344 Query: 610 ARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAA 789 RTKAEDPAA+R+IVSF+AS + G+EFVKC V+GQSFMLHQIRKM+GLAV++MRN A Sbjct: 345 TRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCA 404 Query: 790 PESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKH 969 PES I +AL++D+N+ +PTAPEVGL+L E LF +YN KW+ H E+S+K E+ +FK Sbjct: 405 PESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEVAEDFKM 464 Query: 970 KHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071 K IY+HIASTE K+G V +WLHSLN RNY D V Sbjct: 465 KQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRV 498 >ref|XP_004238400.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum lycopersicum] Length = 598 Score = 360 bits (925), Expect = 4e-97 Identities = 189/358 (52%), Positives = 244/358 (68%), Gaps = 4/358 (1%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F + +P F+D++NS L IR+ GF+RVT +FSAK FC Sbjct: 105 SARTDKGVSAVGQVVSGRFYV----DPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFC 160 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRLEDGT 354 D+RRY Y++P+FALDP +HRDRES S +V C C +RGRKV G++GRR+ D Sbjct: 161 DKRRYVYLVPVFALDPYAHRDRESVLASLGSGKELVKCLNCPERGRKVAGVMGRRVFDPI 220 Query: 355 IVNEKVQDEAQPQEN-PNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKS-F 528 + + D N P +++ + +EN + E +S F Sbjct: 221 TQSVIIVDAPVVTANDPTTDTNMIIENEASLSEKVEERIDVVERSDENAKKEEQVEESVF 280 Query: 529 SYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKC 708 Y EKEKERFN+IL F GTHNFHNFT RTKA+DPAAKR+I+SF A+ ++G++FVKC Sbjct: 281 CYGEKEKERFNRILKYFEGTHNFHNFTTRTKADDPAAKRFIISFNANTVVNVDGIDFVKC 340 Query: 709 TVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFP 888 V+GQSFMLHQIRKMIGLAV++MRN APES I A RRD+N+ +P APEVGL+L E F Sbjct: 341 EVIGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFFT 400 Query: 889 AYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062 +YN KW+ H E+S+K ++ EFK K+IY+HIASTE KEGT+ +WLHSLN RNY D Sbjct: 401 SYNSKWKDTHEEVSLKAYLEEAEEFKVKYIYSHIASTEQKEGTMAVWLHSLNHRNYPD 458 >ref|XP_006342092.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Solanum tuberosum] Length = 569 Score = 360 bits (923), Expect = 7e-97 Identities = 188/358 (52%), Positives = 244/358 (68%), Gaps = 4/358 (1%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F + +P F+D++NS L IR+ GF+RVT +FSAK FC Sbjct: 106 SARTDKGVSAVGQVVSGRFYV----DPPGFIDRLNSILVPQIRIFGFKRVTNAFSAKKFC 161 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRLEDGT 354 D+RRY Y++P+FALDP +HRDRES S + C C +RGRKV G++GRR+ D Sbjct: 162 DKRRYVYLVPVFALDPYAHRDRESVLASLGSGKELAKCLNCPERGRKVVGVMGRRVFDPI 221 Query: 355 IVNEKVQDEAQPQEN-PNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKS-F 528 + + D N P +++ + +EN + + E +S F Sbjct: 222 TQSVIIVDAPVVNANDPTTDTNMVIENEASLSEKVEERNGEVEGSNENAKMEEQVEESVF 281 Query: 529 SYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKC 708 Y EKEKERFN+IL + GTHNFHNFT RTKA+DPAAKRYI+SF A+ ++G++FVKC Sbjct: 282 CYGEKEKERFNRILKYYEGTHNFHNFTTRTKADDPAAKRYIISFNANTVVNVDGIDFVKC 341 Query: 709 TVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFP 888 V+GQSFMLHQIRKMIGLAV++MRN APES I A RRD+N+ +P APEVGL+L E F Sbjct: 342 EVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIVTAFRRDVNINVPMAPEVGLYLDECFFT 401 Query: 889 AYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062 +YN KW+ H E+S+K ++ EFK K+IY+HIASTE KEGT+ +WLHSLN RNY D Sbjct: 402 SYNSKWKDTHEEVSLKAYLEEAEEFKMKYIYSHIASTEQKEGTMAVWLHSLNHRNYPD 459 >ref|XP_002307759.2| hypothetical protein POPTR_0005s26830g [Populus trichocarpa] gi|550339814|gb|EEE94755.2| hypothetical protein POPTR_0005s26830g [Populus trichocarpa] Length = 497 Score = 358 bits (919), Expect = 2e-96 Identities = 193/369 (52%), Positives = 255/369 (69%), Gaps = 15/369 (4%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P V++++S+L IR+ G++RVT SF+AK FC Sbjct: 109 SARTDKGVSAVGQVVSGRFYI----DPPGLVERLHSNLSPQIRIFGYKRVTGSFNAKKFC 164 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR-LEDG 351 DRRRY Y++P+FAL+P SHRDRES S +V C +CS+RGRKV G +G+R E Sbjct: 165 DRRRYVYLIPVFALNPCSHRDRESVLASLGSGSELVKCLQCSERGRKVVGAVGKRSFESK 224 Query: 352 TIV-------NEK---VQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPK--KSPE 495 + V N+K ++ E + + + +S S+ NP K KS E Sbjct: 225 SDVSPTEIWSNDKDTTLKSEIKEEVSISSNSEDANANPEIKDEIMVSIENGDDKNTKSEE 284 Query: 496 QGIAENNGKSFSYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDA 675 + I G F Y EKEKERFN+IL+ ++G+HNFHNFT RTKAEDP+A+RYI+SF+A Sbjct: 285 EAI---KGSGFCYGEKEKERFNRILNYYLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTT 341 Query: 676 FEINGVEFVKCTVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPE 855 + G+EFVKC V+GQSFMLHQIRKMIG+AV++MRN A ES I AL++++N+ +PTAPE Sbjct: 342 VAVEGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCASESLIQTALQKNVNINVPTAPE 401 Query: 856 VGLFLVESLFPAYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLH 1035 VGL+L E F +YN KW+ H ELS+K E++ EFK KHIY+HIA+TE KEG+V +WLH Sbjct: 402 VGLYLDECFFTSYNQKWKDSHEELSMKDYEEEAEEFKMKHIYSHIATTEHKEGSVALWLH 461 Query: 1036 SLNQRNYVD 1062 SLN RNY D Sbjct: 462 SLNHRNYPD 470 >gb|EOY18823.1| Pseudouridine synthase [Theobroma cacao] Length = 507 Score = 356 bits (914), Expect = 8e-96 Identities = 190/358 (53%), Positives = 243/358 (67%), Gaps = 4/358 (1%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P V+++N LP IR+ G++RVT SF++K FC Sbjct: 113 SARTDKGVSAVGQVVSGRFYI----DPPGLVERLNRILPAQIRIFGYKRVTASFNSKKFC 168 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRLEDG- 351 DRRRY Y++P+FALDP+ HRDRES S +V C ECS+RGRKV G++G+R + Sbjct: 169 DRRRYVYLIPVFALDPSCHRDRESVLASLGSGNELVKCLECSERGRKVAGVMGKRSFEAK 228 Query: 352 -TIVNEKVQDEAQPQENPNSESQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKSF 528 TIV+ V N E + E K + E+ E + F Sbjct: 229 STIVHSDVSSNNGESGNVIKEHNLTSELEEVTDSSVQNEFTEVDKVNVEKIPLEE--RRF 286 Query: 529 SYSEKEKERFNKILSQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKC 708 Y E+EK FN+IL +VG+HNFHNFT RTKAEDP+A+RYIVSF A+ + G++FVKC Sbjct: 287 CYGEEEKGLFNRILKHYVGSHNFHNFTTRTKAEDPSARRYIVSFHANTVVNVEGIDFVKC 346 Query: 709 TVLGQSFMLHQIRKMIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFP 888 V+GQSFMLHQIRKMIG+AV+VMRN APES I ALR+D+++ +PTAPEVGL+L E LF Sbjct: 347 EVVGQSFMLHQIRKMIGMAVAVMRNCAPESLIETALRKDVSINVPTAPEVGLYLDECLFA 406 Query: 889 AYNDKWQSIHGELSVKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVD 1062 +YN KW+ H ELS+K E++ EFK K IY+HIASTE +EG V +WLHSLN RNY D Sbjct: 407 SYNQKWKDSHEELSMKAYEEEAEEFKMKFIYSHIASTEREEGVVALWLHSLNHRNYPD 464 >ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis vinifera] Length = 503 Score = 355 bits (912), Expect = 1e-95 Identities = 189/400 (47%), Positives = 250/400 (62%), Gaps = 43/400 (10%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P V+++NS+LP IR+ GF+RVT SF+AK FC Sbjct: 94 SARTDKGVSAVGQVVSGRFYI----DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFC 149 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRR----- 339 DRRRY Y++P+FALDP+SH DRES S +V C ECS+RGRKV G++G+R Sbjct: 150 DRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLECSERGRKVVGIMGKRSFESK 209 Query: 340 ------------------------------------LEDGTIVNEKVQDEAQPQENPNSE 411 DG +++ +++ Q+N SE Sbjct: 210 VSVDDREDVEGESKNIVGAAILKSEAKEESMASSDNRHDGNSISQPIKEGRCFQDNETSE 269 Query: 412 SQVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENNGKSFSYSEKEKERFNKILSQFVGTH 591 S P+ ++S + G F Y +KE+ERFN+IL +VGTH Sbjct: 270 S-----TPDSRASAQNEPGVSHSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTH 324 Query: 592 NFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRKMIGLAVS 771 NFHNFT R KAEDP+A+R+IVSF+ + + G+EFVKC V+GQSFMLHQIRKMIGLAV+ Sbjct: 325 NFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVA 384 Query: 772 VMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELSVKGLEKQ 951 +MRN APES + AL +D+N+ +PTAPEVGL+L E F +YN KW+ H E+S+K ++ Sbjct: 385 IMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEE 444 Query: 952 ISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAV 1071 EFK KH+Y+HIA+TE KEG V +WLHSLN RNY D + Sbjct: 445 AEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDLCI 484 >ref|XP_006435279.1| hypothetical protein CICLE_v10000838mg [Citrus clementina] gi|557537401|gb|ESR48519.1| hypothetical protein CICLE_v10000838mg [Citrus clementina] Length = 526 Score = 352 bits (904), Expect = 1e-94 Identities = 194/414 (46%), Positives = 256/414 (61%), Gaps = 50/414 (12%) Frame = +1 Query: 1 AARTDKGVSALGQVVSGYFLIHEPQEPSVFVDKINSHLPETIRVLGFQRVTPSFSAKNFC 180 +ARTDKGVSA+GQVVSG F I +P V+++NS+LP IR+ G++RVT SF+AK FC Sbjct: 115 SARTDKGVSAVGQVVSGRFCI----DPPGLVERLNSNLPTQIRIFGYKRVTASFNAKKFC 170 Query: 181 DRRRYEYVLPLFALDPASHRDRESAPDS-NYVVAMVNC-ECSDRGRKVPGLIGRRL---- 342 D+RRY Y+LP+FALD +SHRDRES S +V C ECS+RGRKV G++G+R Sbjct: 171 DQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLECSERGRKVIGVMGKRTYQLG 230 Query: 343 ----EDGTIVNEKVQ--------------------------DEAQPQENPNSES------ 414 ++ +N +V+ E+ EN NSES Sbjct: 231 LPSNDENASLNSQVKVDTVVSTCNGDRHNTNLESVESNKTISESVMVENANSESVNETLV 290 Query: 415 ----QVNLENPNKXXXXXXXXXXXXPKKSPEQGIAENN----GKSFSYSEKEKERFNKIL 570 ++N N + E+ + G F Y E+EK+RFN+IL Sbjct: 291 ESRTSETVQNENTDLSLDLDSKNDSKVMAEERSVNGEEKLLKGSGFCYGEEEKKRFNRIL 350 Query: 571 SQFVGTHNFHNFTARTKAEDPAAKRYIVSFEASDAFEINGVEFVKCTVLGQSFMLHQIRK 750 +VG+HNFHNFT RTKAEDP+A+RYI+SF A + G++F+KC V+GQSFMLHQIRK Sbjct: 351 KHYVGSHNFHNFTTRTKAEDPSARRYIISFGADSVVNVEGIDFLKCEVVGQSFMLHQIRK 410 Query: 751 MIGLAVSVMRNAAPESAIPRALRRDMNMTIPTAPEVGLFLVESLFPAYNDKWQSIHGELS 930 MIGLAV+V+RN APES I AL++D+N+ +PTAPEVGL+L E +F +YN KW+ H ELS Sbjct: 411 MIGLAVAVVRNCAPESLIETALQKDVNINVPTAPEVGLYLDECIFASYNKKWKDSHEELS 470 Query: 931 VKGLEKQISEFKHKHIYNHIASTEVKEGTVGMWLHSLNQRNYVDFAVAWEEERA 1092 +K E++ FK KHI++HIA TE KEG V +WLHSLN RNY D +E A Sbjct: 471 MKAYEEEAENFKMKHIFSHIARTEQKEGVVALWLHSLNYRNYPDLRFLGNDESA 524