BLASTX nr result
ID: Ephedra28_contig00002836
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00002836
(389 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A... 79 8e-13
ref|XP_004972830.1| PREDICTED: probable RNA polymerase II transc... 77 2e-12
ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transc... 77 2e-12
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g... 72 6e-11
gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indi... 72 6e-11
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc... 72 8e-11
gb|ACF22789.1| transcription factor related protein [Brachypodiu... 72 8e-11
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 72 8e-11
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] 72 8e-11
ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc... 72 1e-10
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc... 72 1e-10
ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [S... 72 1e-10
gb|EMS48309.1| hypothetical protein TRIUR3_27691 [Triticum urartu] 70 3e-10
gb|AFW61225.1| hypothetical protein ZEAMMB73_026868 [Zea mays] 70 3e-10
gb|AFW61224.1| BSD domain containing protein [Zea mays] 70 3e-10
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare] 70 3e-10
gb|ACG24327.1| BSD domain containing protein [Zea mays] 70 3e-10
gb|EMT19668.1| hypothetical protein F775_30844 [Aegilops tauschii] 69 6e-10
ref|XP_006589336.1| PREDICTED: probable RNA polymerase II transc... 69 8e-10
ref|XP_006589335.1| PREDICTED: probable RNA polymerase II transc... 69 8e-10
>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
gi|548861733|gb|ERN19104.1| hypothetical protein
AMTR_s00061p00135540 [Amborella trichopoda]
Length = 626
Score = 78.6 bits (192), Expect = 8e-13
Identities = 45/77 (58%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +1
Query: 160 SMRATYKPT-VKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA 336
+MRA YK + K PGV GVLT+ + F F PNDP S++KLDV+F+ IK HKFSKE +
Sbjct: 7 TMRAKYKASGPKDPGVAGVLTMRDDSFIFRPNDPS--SSVKLDVSFRCIKGHKFSKEGSK 64
Query: 337 QALLNLMQDPAIKGGGF 387
QALLNL QD KGGG+
Sbjct: 65 QALLNLTQD---KGGGY 78
>ref|XP_004972830.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like isoform X2 [Setaria italica]
Length = 476
Score = 77.0 bits (188), Expect = 2e-12
Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG+L ++ A YK T+K PG PG+L + + KFTF PNDPR S MKL+V F++IK HKF+
Sbjct: 1 MGSL--TIGAKYKTTLKDPGTPGILRMNDDKFTFTPNDPR--SAMKLNVEFRSIKGHKFN 56
Query: 322 K-ETAAQALLNLMQDPAIKGGGF 387
K + ALLNL +D + KGGG+
Sbjct: 57 KVDGNKPALLNLSKD-SDKGGGY 78
>ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like isoform X1 [Setaria italica]
Length = 600
Score = 77.0 bits (188), Expect = 2e-12
Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG+L ++ A YK T+K PG PG+L + + KFTF PNDPR S MKL+V F++IK HKF+
Sbjct: 1 MGSL--TIGAKYKTTLKDPGTPGILRMNDDKFTFTPNDPR--SAMKLNVEFRSIKGHKFN 56
Query: 322 K-ETAAQALLNLMQDPAIKGGGF 387
K + ALLNL +D + KGGG+
Sbjct: 57 KVDGNKPALLNLSKD-SDKGGGY 78
>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
gi|38636938|dbj|BAD03200.1| unknown protein [Oryza
sativa Japonica Group] gi|113623552|dbj|BAF23497.1|
Os08g0338200 [Oryza sativa Japonica Group]
gi|215686948|dbj|BAG90767.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 604
Score = 72.4 bits (176), Expect = 6e-11
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG++ ++ A YK T+K PG GVL + E KFTF P+DPR S MKL+V+F++IK HKF+
Sbjct: 1 MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56
Query: 322 K---ETAAQALLNLMQDPAIKGGGF 387
K A LLNL +D + KGGG+
Sbjct: 57 KVDGSKPAPPLLNLSKD-SDKGGGY 80
>gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indica Group]
gi|222640385|gb|EEE68517.1| hypothetical protein
OsJ_26954 [Oryza sativa Japonica Group]
Length = 625
Score = 72.4 bits (176), Expect = 6e-11
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG++ ++ A YK T+K PG GVL + E KFTF P+DPR S MKL+V+F++IK HKF+
Sbjct: 1 MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56
Query: 322 K---ETAAQALLNLMQDPAIKGGGF 387
K A LLNL +D + KGGG+
Sbjct: 57 KVDGSKPAPPLLNLSKD-SDKGGGY 80
>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Brachypodium distachyon]
Length = 602
Score = 72.0 bits (175), Expect = 8e-11
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MGT+ ++ A YK T+K PG GVL + E K FIPNDPR S MKL+V+F+ IK HKF+
Sbjct: 1 MGTM--TIGAKYKTTLKDPGTTGVLRMNEDKLAFIPNDPR--SLMKLNVDFRTIKGHKFN 56
Query: 322 KETAAQ---ALLNLMQDPAIKGGGF 387
K ++ LLNL +D + KGGG+
Sbjct: 57 KVDGSKPTPPLLNLSKD-SDKGGGY 80
>gb|ACF22789.1| transcription factor related protein [Brachypodium distachyon]
Length = 576
Score = 72.0 bits (175), Expect = 8e-11
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MGT+ ++ A YK T+K PG GVL + E K FIPNDPR S MKL+V+F+ IK HKF+
Sbjct: 1 MGTM--TIGAKYKTTLKDPGTTGVLRMNEDKLAFIPNDPR--SLMKLNVDFRTIKGHKFN 56
Query: 322 KETAAQ---ALLNLMQDPAIKGGGF 387
K ++ LLNL +D + KGGG+
Sbjct: 57 KVDGSKPTPPLLNLSKD-SDKGGGY 80
>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1 [Vitis vinifera]
gi|296090002|emb|CBI39821.3| unnamed protein product
[Vitis vinifera]
Length = 602
Score = 72.0 bits (175), Expect = 8e-11
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +1
Query: 166 RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ-A 342
RA YK +VK GV GVL +TE KF F+PNDP S+ + DV F+ IK HKFSK + + A
Sbjct: 8 RARYKTSVKDSGVAGVLKMTEDKFVFMPNDP--TSSARFDVEFRFIKGHKFSKGGSNKPA 65
Query: 343 LLNLMQDPAIKGGGF 387
LLNL QD + KGGG+
Sbjct: 66 LLNLTQD-SEKGGGY 79
>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
Length = 735
Score = 72.0 bits (175), Expect = 8e-11
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Frame = +1
Query: 166 RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ-A 342
RA YK +VK GV GVL +TE KF F+PNDP S+ + DV F+ IK HKFSK + + A
Sbjct: 8 RARYKTSVKDSGVAGVLKMTEDKFVFMPNDP--TSSARFDVEFRFIKGHKFSKGGSNKPA 65
Query: 343 LLNLMQDPAIKGGGF 387
LLNL QD + KGGG+
Sbjct: 66 LLNLTQD-SEKGGGY 79
>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Solanum tuberosum]
Length = 599
Score = 71.6 bits (174), Expect = 1e-10
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = +1
Query: 166 RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKE-TAAQA 342
RA YK +VK PGVPGVL LT+++F F+PNDP + KL+V FK IK HK SKE ++ QA
Sbjct: 9 RAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTT--KLNVEFKLIKGHKSSKECSSKQA 66
Query: 343 LLNLMQDPAIKGGGF 387
LLNL Q +GG +
Sbjct: 67 LLNLTQ---AQGGNY 78
>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Solanum lycopersicum]
Length = 599
Score = 71.6 bits (174), Expect = 1e-10
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = +1
Query: 166 RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKE-TAAQA 342
RA YK +VK PGVPGVL LT+++F F+PNDP + KL+V FK IK HK SKE ++ QA
Sbjct: 9 RAKYKTSVKVPGVPGVLKLTKERFYFMPNDPTLTT--KLNVEFKLIKGHKSSKECSSKQA 66
Query: 343 LLNLMQDPAIKGGGF 387
LLNL Q +GG +
Sbjct: 67 LLNLTQ---AQGGNY 78
>ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [Sorghum bicolor]
gi|241940216|gb|EES13361.1| hypothetical protein
SORBIDRAFT_07g003540 [Sorghum bicolor]
Length = 600
Score = 71.6 bits (174), Expect = 1e-10
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG++ ++ A YK T+K PG PG+L + + +FTF PNDPR S MK +V+F+ IK HKF+
Sbjct: 1 MGSM--TIGAKYKTTIKDPGTPGILRMNDDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56
Query: 322 K-ETAAQALLNLMQDPAIKGGGF 387
K E ALLNL ++ K GG+
Sbjct: 57 KVEGNKAALLNLSKED--KAGGY 77
>gb|EMS48309.1| hypothetical protein TRIUR3_27691 [Triticum urartu]
Length = 592
Score = 70.1 bits (170), Expect = 3e-10
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MGT+ ++ A YK T+K G GVL ++E K TF PNDPR S MKL V+F+ IK HKF+
Sbjct: 1 MGTM--TIGARYKATLKDRGTGGVLRMSEDKLTFTPNDPR--SLMKLSVDFRTIKGHKFN 56
Query: 322 KETAAQ---ALLNLMQDPAIKGGGF 387
K ++ ALLNL +D + KGGG+
Sbjct: 57 KVDGSKPTPALLNLSKD-SDKGGGY 80
>gb|AFW61225.1| hypothetical protein ZEAMMB73_026868 [Zea mays]
Length = 476
Score = 70.1 bits (170), Expect = 3e-10
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG++ ++ A YK T+K PG PG+L + +FTF PNDPR S MK +V+F+ IK HKF+
Sbjct: 1 MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56
Query: 322 K-ETAAQALLNLMQDPAIKGGGF 387
K E ALLNL ++ K GG+
Sbjct: 57 KVEGNKAALLNLSKED--KAGGY 77
>gb|AFW61224.1| BSD domain containing protein [Zea mays]
Length = 600
Score = 70.1 bits (170), Expect = 3e-10
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG++ ++ A YK T+K PG PG+L + +FTF PNDPR S MK +V+F+ IK HKF+
Sbjct: 1 MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56
Query: 322 K-ETAAQALLNLMQDPAIKGGGF 387
K E ALLNL ++ K GG+
Sbjct: 57 KVEGNKAALLNLSKED--KAGGY 77
>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 70.1 bits (170), Expect = 3e-10
Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Frame = +1
Query: 169 ATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ--- 339
A YK T+K G GVL ++E KFTF PNDPR S MKL V+F+ IK HKF+K ++
Sbjct: 4 AKYKATLKDRGTGGVLRMSEDKFTFTPNDPR--SLMKLSVDFQTIKGHKFNKVDGSKPTP 61
Query: 340 ALLNLMQDPAIKGGGF 387
ALLNL +D + KGGG+
Sbjct: 62 ALLNLSKD-SDKGGGY 76
>gb|ACG24327.1| BSD domain containing protein [Zea mays]
Length = 600
Score = 70.1 bits (170), Expect = 3e-10
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MG++ ++ A YK T+K PG PG+L + +FTF PNDPR S MK +V+F+ IK HKF+
Sbjct: 1 MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56
Query: 322 K-ETAAQALLNLMQDPAIKGGGF 387
K E ALLNL ++ K GG+
Sbjct: 57 KVEGNKAALLNLSKED--KAGGY 77
>gb|EMT19668.1| hypothetical protein F775_30844 [Aegilops tauschii]
Length = 611
Score = 68.9 bits (167), Expect = 6e-10
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
MGT+ ++ A YK T+K PG GVL ++E K F PNDPR S MKL+V+F++IK HKF+
Sbjct: 1 MGTM--TIGAKYKTTLKDPGHGGVLRMSEDKLIFTPNDPR--SLMKLNVDFRSIKGHKFN 56
Query: 322 KETAAQ---ALLNLMQDPAIKGGGF 387
K ++ LLNL +D + KGGG+
Sbjct: 57 KVDGSKPTPPLLNLSKD-SDKGGGY 80
>ref|XP_006589336.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-3-like isoform X5 [Glycine max]
Length = 523
Score = 68.6 bits (166), Expect = 8e-10
Identities = 39/74 (52%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
M + Q RA YK TVK PG PGVL LT+ +F F PNDP S KLDV F+ I+ HK +
Sbjct: 1 MSSRQVVKRAKYKTTVKDPGTPGVLKLTQDRFVFKPNDP--TSKTKLDVEFRFIQGHKVT 58
Query: 322 KETAAQ-ALLNLMQ 360
KE + Q LLNL++
Sbjct: 59 KEGSKQPPLLNLIR 72
>ref|XP_006589335.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-3-like isoform X4 [Glycine max]
Length = 549
Score = 68.6 bits (166), Expect = 8e-10
Identities = 39/74 (52%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +1
Query: 142 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 321
M + Q RA YK TVK PG PGVL LT+ +F F PNDP S KLDV F+ I+ HK +
Sbjct: 1 MSSRQVVKRAKYKTTVKDPGTPGVLKLTQDRFVFKPNDP--TSKTKLDVEFRFIQGHKVT 58
Query: 322 KETAAQ-ALLNLMQ 360
KE + Q LLNL++
Sbjct: 59 KEGSKQPPLLNLIR 72