BLASTX nr result
ID: Ephedra28_contig00002388
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00002388
(566 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ... 134 2e-29
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ... 133 3e-29
ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform ... 133 3e-29
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ... 133 3e-29
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr... 133 4e-29
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g... 132 6e-29
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi... 132 6e-29
emb|CBI28783.3| unnamed protein product [Vitis vinifera] 132 8e-29
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v... 132 8e-29
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca... 131 1e-28
gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus pe... 130 2e-28
gb|AFW61219.1| DNA topoisomerase I [Zea mays] 130 2e-28
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A... 130 2e-28
gb|ACL52396.1| unknown [Zea mays] 130 2e-28
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 130 2e-28
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] 130 2e-28
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ... 130 3e-28
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr... 130 3e-28
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b... 129 4e-28
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S... 129 5e-28
>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
putative [Ricinus communis]
Length = 891
Score = 134 bits (336), Expect = 2e-29
Identities = 64/97 (65%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKPPL D +GK KRN+ P KM++ KTKE+LKTVALGTSKINYLDP
Sbjct: 794 GKPPLKDADGKQKRNLSPENIEKKIASTNQRIEKMELNMKTKEDLKTVALGTSKINYLDP 853
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSLLAKF+WAMDV+P++R
Sbjct: 854 RITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPQFR 890
>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
Length = 903
Score = 133 bits (335), Expect = 3e-29
Identities = 66/97 (68%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKP DKEGK KRN+ P KM+ME+KTKE+LKTVALGTSKINYLDP
Sbjct: 806 GKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDLKTVALGTSKINYLDP 865
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSL+AKF WAMDV+PE+R
Sbjct: 866 RITVAWCKRHEVPIEKIFNKSLVAKFGWAMDVDPEFR 902
>ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform X2 [Setaria italica]
Length = 930
Score = 133 bits (335), Expect = 3e-29
Identities = 66/97 (68%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKP DKEGK KRN+ P KM+ME+KTKE+LKTVALGTSKINYLDP
Sbjct: 833 GKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDLKTVALGTSKINYLDP 892
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSL+AKF WAMDV+PE+R
Sbjct: 893 RITVAWCKRHEVPIEKIFNKSLVAKFGWAMDVDPEFR 929
>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
Length = 932
Score = 133 bits (335), Expect = 3e-29
Identities = 66/97 (68%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKP DKEGK KRN+ P KM+ME+KTKE+LKTVALGTSKINYLDP
Sbjct: 835 GKPLGYDKEGKQKRNLAPDAIEKKIAAIETKIEKMEMEKKTKEDLKTVALGTSKINYLDP 894
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSL+AKF WAMDV+PE+R
Sbjct: 895 RITVAWCKRHEVPIEKIFNKSLVAKFGWAMDVDPEFR 931
>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222860420|gb|EEE97967.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 860
Score = 133 bits (334), Expect = 4e-29
Identities = 64/97 (65%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKPPL D +GK KRN+ P KM++ KTKE+LKTVALGTSKINYLDP
Sbjct: 763 GKPPLKDADGKQKRNLTPEAIEKKIATTNQKIEKMELSMKTKEDLKTVALGTSKINYLDP 822
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSLLAKF+WAMDV+P++R
Sbjct: 823 RITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPQFR 859
>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
[Oryza sativa Japonica Group]
gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
protein OsJ_26075 [Oryza sativa Japonica Group]
Length = 916
Score = 132 bits (332), Expect = 6e-29
Identities = 64/97 (65%), Positives = 76/97 (78%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GK NDK+GKPKRN+ P KM+M++K KE+LKTVALGTSKINYLDP
Sbjct: 819 GKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDP 878
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSL+AKFSWAMDV+P++R
Sbjct: 879 RITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFR 915
>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
Length = 916
Score = 132 bits (332), Expect = 6e-29
Identities = 64/97 (65%), Positives = 76/97 (78%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GK NDK+GKPKRN+ P KM+M++K KE+LKTVALGTSKINYLDP
Sbjct: 819 GKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGTSKINYLDP 878
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSL+AKFSWAMDV+P++R
Sbjct: 879 RITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFR 915
>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 132 bits (331), Expect = 8e-29
Identities = 63/97 (64%), Positives = 74/97 (76%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKPPL D +GKPK+N+ P KM+ + KTKE+LKTVALGTSKINYLDP
Sbjct: 627 GKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINYLDP 686
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RI+VAWCK +VPIEKIFNKSLLAKF+WAMDV+P +R
Sbjct: 687 RISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFR 723
>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
Length = 883
Score = 132 bits (331), Expect = 8e-29
Identities = 63/97 (64%), Positives = 74/97 (76%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKPPL D +GKPK+N+ P KM+ + KTKE+LKTVALGTSKINYLDP
Sbjct: 786 GKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKTVALGTSKINYLDP 845
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RI+VAWCK +VPIEKIFNKSLLAKF+WAMDV+P +R
Sbjct: 846 RISVAWCKRQEVPIEKIFNKSLLAKFAWAMDVDPSFR 882
>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao]
Length = 904
Score = 131 bits (329), Expect = 1e-28
Identities = 63/97 (64%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKPPL D +GK KRN+ P KM+ + +TKE+LKTVALGTSKINYLDP
Sbjct: 807 GKPPLKDADGKQKRNLTPQAIQKKIDQTNAKIEKMERDMQTKEDLKTVALGTSKINYLDP 866
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSLLAKF+WAMDV+P++R
Sbjct: 867 RITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPDFR 903
>gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus persica]
Length = 790
Score = 130 bits (327), Expect = 2e-28
Identities = 61/97 (62%), Positives = 76/97 (78%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
G+PPL D +GK KRN+ P KM+++ +TKE+LKTVALGTSKINYLDP
Sbjct: 693 GRPPLKDADGKQKRNLTPEALERKIAQTTVKIEKMELDMRTKEDLKTVALGTSKINYLDP 752
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSLLAKF+W+MDV+P++R
Sbjct: 753 RITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPDFR 789
>gb|AFW61219.1| DNA topoisomerase I [Zea mays]
Length = 602
Score = 130 bits (327), Expect = 2e-28
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKP D EGKPKRN+ P KM+M+++ KE+LKTVALGTSKINYLDP
Sbjct: 505 GKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDP 564
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSLLAKF WAMDV+PE+R
Sbjct: 565 RITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFR 601
>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
topoisomerase I [Zea mays]
Length = 904
Score = 130 bits (327), Expect = 2e-28
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKP D EGKPKRN+ P KM+M+++ KE+LKTVALGTSKINYLDP
Sbjct: 807 GKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDP 866
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSLLAKF WAMDV+PE+R
Sbjct: 867 RITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFR 903
>gb|ACL52396.1| unknown [Zea mays]
Length = 574
Score = 130 bits (327), Expect = 2e-28
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKP D EGKPKRN+ P KM+M+++ KE+LKTVALGTSKINYLDP
Sbjct: 477 GKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTVALGTSKINYLDP 536
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSLLAKF WAMDV+PE+R
Sbjct: 537 RITVAWCKRHEVPIEKIFNKSLLAKFVWAMDVDPEFR 573
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 130 bits (327), Expect = 2e-28
Identities = 64/99 (64%), Positives = 76/99 (76%), Gaps = 2/99 (2%)
Frame = -1
Query: 566 GKPPLNDK--EGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYL 393
GKPPL K +GKPKRN+ P KM+ +++TKE+LKTVALGTSKINYL
Sbjct: 811 GKPPLKSKNADGKPKRNLNPESLEKKIAQTNAKIEKMERDKETKEDLKTVALGTSKINYL 870
Query: 392 DPRITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
DPRITVAWCK ++VPIEKIFNKSLLAKF+WAMDV+P +R
Sbjct: 871 DPRITVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPSFR 909
>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 130 bits (327), Expect = 2e-28
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKPPL D +GKPKRN+ P KM+ +++TKE LKT+ALGTSKI+YLDP
Sbjct: 797 GKPPLEDADGKPKRNLTPEALERKIGQTNAKIEKMERDKETKEGLKTIALGTSKISYLDP 856
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEK+FNKSLLAKF+W+MDV+P +R
Sbjct: 857 RITVAWCKRHEVPIEKVFNKSLLAKFAWSMDVDPSFR 893
>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
topoisomerase 1-like isoform X2 [Citrus sinensis]
gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
topoisomerase 1-like isoform X3 [Citrus sinensis]
gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
topoisomerase 1-like isoform X4 [Citrus sinensis]
Length = 902
Score = 130 bits (326), Expect = 3e-28
Identities = 65/98 (66%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Frame = -1
Query: 566 GKPPL-NDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLD 390
GKPPL D +GK KRN+ P KM+ + KTKE+LKTVALGTSKINYLD
Sbjct: 804 GKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLD 863
Query: 389 PRITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
PRITVAWCK ++VPIEKIFNKSLLAKF+WAMDV+PE+R
Sbjct: 864 PRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFR 901
>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|567920950|ref|XP_006452481.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555705|gb|ESR65719.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555707|gb|ESR65721.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 902
Score = 130 bits (326), Expect = 3e-28
Identities = 65/98 (66%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Frame = -1
Query: 566 GKPPL-NDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLD 390
GKPPL D +GK KRN+ P KM+ + KTKE+LKTVALGTSKINYLD
Sbjct: 804 GKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLD 863
Query: 389 PRITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
PRITVAWCK ++VPIEKIFNKSLLAKF+WAMDV+PE+R
Sbjct: 864 PRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPEFR 901
>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
Length = 911
Score = 129 bits (325), Expect = 4e-28
Identities = 63/97 (64%), Positives = 75/97 (77%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GK DK+GKPKRN+ P KM+M++K KE+LKTVALGTSKINYLDP
Sbjct: 814 GKSLGYDKDGKPKRNLAPEAFEKKISQVETKIEKMEMDKKIKEDLKTVALGTSKINYLDP 873
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSL+AKFSWAMDV+P++R
Sbjct: 874 RITVAWCKRHEVPIEKIFNKSLIAKFSWAMDVDPDFR 910
>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
gi|241940222|gb|EES13367.1| hypothetical protein
SORBIDRAFT_07g003610 [Sorghum bicolor]
Length = 921
Score = 129 bits (324), Expect = 5e-28
Identities = 63/97 (64%), Positives = 74/97 (76%)
Frame = -1
Query: 566 GKPPLNDKEGKPKRNIGPXXXXXXXXXXXXXXXKMDMERKTKENLKTVALGTSKINYLDP 387
GKP DKEGK KRN+ P KM+M++K KE+LKTVALGTSKINYLDP
Sbjct: 824 GKPLGYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKKIKEDLKTVALGTSKINYLDP 883
Query: 386 RITVAWCKSNDVPIEKIFNKSLLAKFSWAMDVEPEYR 276
RITVAWCK ++VPIEKIFNKSL+AKF WAMDV+P++R
Sbjct: 884 RITVAWCKRHEVPIEKIFNKSLIAKFGWAMDVDPDFR 920