BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00002092
         (624 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857525.1| hypothetical protein AMTR_s00061p00026580, p...   215   7e-54
emb|CBI28783.3| unnamed protein product [Vitis vinifera]              211   1e-52
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   211   1e-52
ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [S...   210   3e-52
ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [A...   209   7e-52
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A...   208   1e-51
gb|AFW61219.1| DNA topoisomerase I [Zea mays]                         207   2e-51
gb|AFW61218.1| hypothetical protein ZEAMMB73_011101 [Zea mays]        207   2e-51
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ...   206   3e-51
ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform ...   206   3e-51
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ...   206   3e-51
gb|ACL52396.1| unknown [Zea mays]                                     206   3e-51
gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]                  204   1e-50
gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]                202   5e-50
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g...   202   8e-50
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b...   201   1e-49
ref|XP_003573489.1| PREDICTED: DNA topoisomerase 1-like [Brachyp...   200   3e-49
gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indi...   200   3e-49
ref|NP_200341.1| DNA topoisomerase 1 [Arabidopsis thaliana] gi|2...   197   3e-48
ref|NP_001190543.1| DNA topoisomerase 1 [Arabidopsis thaliana] g...   197   3e-48

>ref|XP_006857525.1| hypothetical protein AMTR_s00061p00026580, partial [Amborella
           trichopoda] gi|548861621|gb|ERN18992.1| hypothetical
           protein AMTR_s00061p00026580, partial [Amborella
           trichopoda]
          Length = 595

 Score =  215 bits (548), Expect = 7e-54
 Identities = 110/193 (56%), Positives = 123/193 (63%)
 Frame = +1

Query: 1   EDSDDEDDVPIAQRMKNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           E  DDEDD+PI+QRMK +                                          
Sbjct: 291 EKGDDEDDLPISQRMKKSASVSGQASAKKISVKTKVVSSSFKKTG--------------- 335

Query: 181 XXXXXQKLLKKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
                 K  KK    LK  KS K PPGSGDGQKWTTLEHNGVIFPPPY+PHG+KMLYNG 
Sbjct: 336 ------KNTKKEIKKLKQSKSAKGPPGSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYNGL 389

Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
           PV LTPE+EEVAT FAVMK+T+YATKPKFVENF +DW+ ILG  H+I+KFELCD TPIYE
Sbjct: 390 PVDLTPEQEEVATMFAVMKDTEYATKPKFVENFMNDWRVILGKNHIIKKFELCDLTPIYE 449

Query: 541 WHLQEKEKKKQMS 579
           WHL+EKEKKK MS
Sbjct: 450 WHLKEKEKKKHMS 462


>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  211 bits (537), Expect = 1e-52
 Identities = 96/128 (75%), Positives = 110/128 (85%)
 Frame = +1

Query: 199 KLLKKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTP 378
           K  KK   S K  KS K+PP SG+GQKWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTP
Sbjct: 155 KKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTP 214

Query: 379 EEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEK 558
           E+EEVAT FAVMK+TDYATKP+F+ENF +DW+  LG  HVI+KFELCDFTPIYEWH +EK
Sbjct: 215 EQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEK 274

Query: 559 EKKKQMST 582
           EKKKQM+T
Sbjct: 275 EKKKQMTT 282


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  211 bits (537), Expect = 1e-52
 Identities = 96/128 (75%), Positives = 110/128 (85%)
 Frame = +1

Query: 199 KLLKKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTP 378
           K  KK   S K  KS K+PP SG+GQKWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTP
Sbjct: 314 KKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTP 373

Query: 379 EEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEK 558
           E+EEVAT FAVMK+TDYATKP+F+ENF +DW+  LG  HVI+KFELCDFTPIYEWH +EK
Sbjct: 374 EQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEK 433

Query: 559 EKKKQMST 582
           EKKKQM+T
Sbjct: 434 EKKKQMTT 441


>ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
           gi|241940222|gb|EES13367.1| hypothetical protein
           SORBIDRAFT_07g003610 [Sorghum bicolor]
          Length = 921

 Score =  210 bits (534), Expect = 3e-52
 Identities = 94/134 (70%), Positives = 115/134 (85%), Gaps = 6/134 (4%)
 Frame = +1

Query: 199 KLLKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
           K LK +G   KN+K+       ++PPGSG+G+KWTTLEHNGVIFPPPY+PHG+KMLYNG+
Sbjct: 346 KKLKGKGKLKKNMKNSQFSKTMRVPPGSGEGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQ 405

Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
           PV LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW++ILG  H+I+KFELCDFTPIYE
Sbjct: 406 PVDLTPEQEEVATMFAVMKDTDYAGKPTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYE 465

Query: 541 WHLQEKEKKKQMST 582
           WHL+EKEKKKQM+T
Sbjct: 466 WHLREKEKKKQMTT 479


>ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [Amborella trichopoda]
           gi|548860061|gb|ERN17669.1| hypothetical protein
           AMTR_s00059p00193620 [Amborella trichopoda]
          Length = 884

 Score =  209 bits (531), Expect = 7e-52
 Identities = 94/124 (75%), Positives = 108/124 (87%)
 Frame = +1

Query: 208 KKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEE 387
           KK    +K  KS K PPGSGDGQKW+TLEHNGVIFP PY+PHG+KMLYNG+PV LTPE+E
Sbjct: 332 KKEMKKIKGSKSAKGPPGSGDGQKWSTLEHNGVIFPSPYKPHGVKMLYNGQPVDLTPEKE 391

Query: 388 EVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKK 567
           EVAT FAVMK+T+Y TKPKF++NF +DW+ ILG  HVI+KFELCDFTPIYEWHL+EKEKK
Sbjct: 392 EVATMFAVMKDTEYETKPKFIDNFMNDWRVILGKNHVIKKFELCDFTPIYEWHLKEKEKK 451

Query: 568 KQMS 579
           KQMS
Sbjct: 452 KQMS 455


>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
           topoisomerase I [Zea mays]
          Length = 904

 Score =  208 bits (529), Expect = 1e-51
 Identities = 92/134 (68%), Positives = 113/134 (84%), Gaps = 6/134 (4%)
 Frame = +1

Query: 199 KLLKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
           K +K +G   KN+K+       K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGK
Sbjct: 329 KKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGK 388

Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
           PV LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG  H+I+ FELCDFTPIYE
Sbjct: 389 PVDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYE 448

Query: 541 WHLQEKEKKKQMST 582
           WHL+EKE+KKQM+T
Sbjct: 449 WHLREKERKKQMTT 462


>gb|AFW61219.1| DNA topoisomerase I [Zea mays]
          Length = 602

 Score =  207 bits (528), Expect = 2e-51
 Identities = 91/134 (67%), Positives = 113/134 (84%), Gaps = 6/134 (4%)
 Frame = +1

Query: 199 KLLKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
           K +K +G   KN+K+       K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGK
Sbjct: 27  KKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGK 86

Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
           P+ LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG  H+I+ FELCDFTPIYE
Sbjct: 87  PIDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYE 146

Query: 541 WHLQEKEKKKQMST 582
           WHL+EKE+KKQM+T
Sbjct: 147 WHLREKERKKQMTT 160


>gb|AFW61218.1| hypothetical protein ZEAMMB73_011101 [Zea mays]
          Length = 438

 Score =  207 bits (528), Expect = 2e-51
 Identities = 91/134 (67%), Positives = 113/134 (84%), Gaps = 6/134 (4%)
 Frame = +1

Query: 199 KLLKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
           K +K +G   KN+K+       K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGK
Sbjct: 27  KKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGK 86

Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
           P+ LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG  H+I+ FELCDFTPIYE
Sbjct: 87  PIDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYE 146

Query: 541 WHLQEKEKKKQMST 582
           WHL+EKE+KKQM+T
Sbjct: 147 WHLREKERKKQMTT 160


>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
          Length = 903

 Score =  206 bits (525), Expect = 3e-51
 Identities = 90/115 (78%), Positives = 105/115 (91%)
 Frame = +1

Query: 238 KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
           K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTPE+EEVAT FAVMK
Sbjct: 347 KTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 406

Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMST 582
           +TDYA KP F+ENF+ DW+ +LG  HVI+KFELCDFTPIYEWHL+EKEKKKQM+T
Sbjct: 407 DTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTT 461


>ref|XP_004972821.1| PREDICTED: DNA topoisomerase 1-like isoform X2 [Setaria italica]
          Length = 930

 Score =  206 bits (525), Expect = 3e-51
 Identities = 90/115 (78%), Positives = 105/115 (91%)
 Frame = +1

Query: 238 KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
           K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTPE+EEVAT FAVMK
Sbjct: 347 KTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 406

Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMST 582
           +TDYA KP F+ENF+ DW+ +LG  HVI+KFELCDFTPIYEWHL+EKEKKKQM+T
Sbjct: 407 DTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTT 461


>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
          Length = 932

 Score =  206 bits (525), Expect = 3e-51
 Identities = 90/115 (78%), Positives = 105/115 (91%)
 Frame = +1

Query: 238 KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
           K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTPE+EEVAT FAVMK
Sbjct: 347 KTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 406

Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMST 582
           +TDYA KP F+ENF+ DW+ +LG  HVI+KFELCDFTPIYEWHL+EKEKKKQM+T
Sbjct: 407 DTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTT 461


>gb|ACL52396.1| unknown [Zea mays]
          Length = 574

 Score =  206 bits (525), Expect = 3e-51
 Identities = 90/132 (68%), Positives = 112/132 (84%), Gaps = 6/132 (4%)
 Frame = +1

Query: 205 LKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPV 366
           +K +G   KN+K+       K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGKP+
Sbjct: 1   MKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPI 60

Query: 367 VLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWH 546
            LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG  H+I+ FELCDFTPIYEWH
Sbjct: 61  DLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWH 120

Query: 547 LQEKEKKKQMST 582
           L+EKE+KKQM+T
Sbjct: 121 LREKERKKQMTT 132


>gb|EMS46223.1| DNA topoisomerase 1 [Triticum urartu]
          Length = 947

 Score =  204 bits (520), Expect = 1e-50
 Identities = 91/125 (72%), Positives = 109/125 (87%)
 Frame = +1

Query: 208 KKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEE 387
           KK   S +  KS ++PPGSG G+KW+TLEHNGVIFPPPY PHG+KMLYNG+PV LTPEEE
Sbjct: 381 KKTMKSSQFSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEE 440

Query: 388 EVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKK 567
           EVAT FAVMK+T+YATK  F++NF+ DWK+ILG  H+I+KFELCDFTPIYEWHL+EKEKK
Sbjct: 441 EVATMFAVMKDTEYATKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKK 500

Query: 568 KQMST 582
           KQM++
Sbjct: 501 KQMTS 505


>gb|EMT20272.1| DNA topoisomerase 1 [Aegilops tauschii]
          Length = 949

 Score =  202 bits (515), Expect = 5e-50
 Identities = 90/125 (72%), Positives = 108/125 (86%)
 Frame = +1

Query: 208 KKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEE 387
           KK   S +  KS ++PPGSG G+KW+TLEHNGVIFPPPY PHG+KMLYNG+PV LTPEEE
Sbjct: 383 KKTMKSSQFSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYNPHGVKMLYNGQPVELTPEEE 442

Query: 388 EVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKK 567
           EVAT FAVMK+T+YA K  F++NF+ DWK+ILG  H+I+KFELCDFTPIYEWHL+EKEKK
Sbjct: 443 EVATMFAVMKDTEYAAKKTFIDNFFGDWKKILGKNHIIKKFELCDFTPIYEWHLREKEKK 502

Query: 568 KQMST 582
           KQM++
Sbjct: 503 KQMTS 507


>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
           gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
           [Oryza sativa Japonica Group]
           gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
           Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
           protein OsJ_26075 [Oryza sativa Japonica Group]
          Length = 916

 Score =  202 bits (513), Expect = 8e-50
 Identities = 91/131 (69%), Positives = 112/131 (85%), Gaps = 3/131 (2%)
 Frame = +1

Query: 199 KLLKKRGTSLKNV---KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVV 369
           K+  K   ++KN    K+ K+PPGSG GQKWTTL H+GVIFPPPY+PHG+KMLYNG+PV 
Sbjct: 344 KMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVD 403

Query: 370 LTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHL 549
           LTPE+EEVAT FAVMK+TDYA+K  F++NF+ DW++ILG  HVI+KFELCDFTPIYEWHL
Sbjct: 404 LTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHL 463

Query: 550 QEKEKKKQMST 582
           +EKEKKKQM++
Sbjct: 464 REKEKKKQMTS 474


>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
          Length = 911

 Score =  201 bits (511), Expect = 1e-49
 Identities = 86/115 (74%), Positives = 105/115 (91%)
 Frame = +1

Query: 238 KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
           K+ K+PPGSG GQKWTTL HNGVIFPPPY+PHG+KMLYNG+PV LTPE+EEVAT F+VMK
Sbjct: 355 KTMKVPPGSGGGQKWTTLVHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFSVMK 414

Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMST 582
           +TDYA+K  F++NF+ DW++ILG  H+I+KFELCDFTPIYEWHL+EKEKKKQM++
Sbjct: 415 DTDYASKQTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTS 469


>ref|XP_003573489.1| PREDICTED: DNA topoisomerase 1-like [Brachypodium distachyon]
          Length = 900

 Score =  200 bits (508), Expect = 3e-49
 Identities = 89/125 (71%), Positives = 108/125 (86%)
 Frame = +1

Query: 208 KKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEE 387
           KK   S +  KS ++PPGSG G+KW+TLEHNGVIFPPPY PHG+KMLYNG+PV LTP +E
Sbjct: 333 KKPMKSSQFSKSLRVPPGSGGGKKWSTLEHNGVIFPPPYSPHGVKMLYNGQPVELTPAQE 392

Query: 388 EVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKK 567
           EVAT FAVMK+T+YATK  F++NF+ DW++ILG  HVI+KFELCDFTPIYEWHL+EKEKK
Sbjct: 393 EVATMFAVMKDTEYATKKTFIDNFFGDWRKILGKNHVIKKFELCDFTPIYEWHLREKEKK 452

Query: 568 KQMST 582
           KQM++
Sbjct: 453 KQMTS 457


>gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
          Length = 916

 Score =  200 bits (508), Expect = 3e-49
 Identities = 90/131 (68%), Positives = 112/131 (85%), Gaps = 3/131 (2%)
 Frame = +1

Query: 199 KLLKKRGTSLKNV---KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVV 369
           K+  K   ++KN    K+ K+PPGSG GQKWTTL H+GVIFPPPY+PHG+K+LYNG+PV 
Sbjct: 344 KMKLKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKILYNGQPVD 403

Query: 370 LTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHL 549
           LTPE+EEVAT FAVMK+TDYA+K  F++NF+ DW++ILG  HVI+KFELCDFTPIYEWHL
Sbjct: 404 LTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHL 463

Query: 550 QEKEKKKQMST 582
           +EKEKKKQM++
Sbjct: 464 REKEKKKQMTS 474


>ref|NP_200341.1| DNA topoisomerase 1 [Arabidopsis thaliana]
           gi|267146|sp|P30181.1|TOP1_ARATH RecName: Full=DNA
           topoisomerase 1; AltName: Full=DNA topoisomerase I
           gi|16558|emb|CAA40763.1| topoisomerase I [Arabidopsis
           thaliana] gi|9758162|dbj|BAB08547.1| DNA topoisomerase I
           [Arabidopsis thaliana] gi|332009229|gb|AED96612.1| DNA
           topoisomerase 1 [Arabidopsis thaliana]
           gi|445137|prf||1908437A topoisomerase I
          Length = 916

 Score =  197 bits (500), Expect = 3e-48
 Identities = 104/194 (53%), Positives = 119/194 (61%), Gaps = 1/194 (0%)
 Frame = +1

Query: 4   DSDDEDDVPIAQRMKNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183
           D DD+DDVPI++R K++                                           
Sbjct: 287 DDDDDDDVPISKRFKSDSSNSNTSSAKPKAVKLNSTSSAAKPKARNVVSPRSRAMT---- 342

Query: 184 XXXXQKLLKKRGTSLKNVKSQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGK 360
                K  KK     K   S K  P SGDGQK WTTL HNGVIFPPPY+PHGIK+LY GK
Sbjct: 343 -----KNTKKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGK 397

Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
           PV LT E+EEVAT FAVM+ETDY TKP+F ENFW+DW+R+LG KHVIQK + CDFTPIYE
Sbjct: 398 PVDLTIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYE 457

Query: 541 WHLQEKEKKKQMST 582
           WHL+EKEKKKQMST
Sbjct: 458 WHLEEKEKKKQMST 471


>ref|NP_001190543.1| DNA topoisomerase 1 [Arabidopsis thaliana]
           gi|332009230|gb|AED96613.1| DNA topoisomerase 1
           [Arabidopsis thaliana]
          Length = 933

 Score =  197 bits (500), Expect = 3e-48
 Identities = 104/194 (53%), Positives = 119/194 (61%), Gaps = 1/194 (0%)
 Frame = +1

Query: 4   DSDDEDDVPIAQRMKNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183
           D DD+DDVPI++R K++                                           
Sbjct: 287 DDDDDDDVPISKRFKSDSSNSNTSSAKPKAVKLNSTSSAAKPKARNVVSPRSRAMT---- 342

Query: 184 XXXXQKLLKKRGTSLKNVKSQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGK 360
                K  KK     K   S K  P SGDGQK WTTL HNGVIFPPPY+PHGIK+LY GK
Sbjct: 343 -----KNTKKVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGK 397

Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
           PV LT E+EEVAT FAVM+ETDY TKP+F ENFW+DW+R+LG KHVIQK + CDFTPIYE
Sbjct: 398 PVDLTIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYE 457

Query: 541 WHLQEKEKKKQMST 582
           WHL+EKEKKKQMST
Sbjct: 458 WHLEEKEKKKQMST 471