BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00000988
         (624 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    60   5e-07
ref|XP_004954664.1| PREDICTED: pentatricopeptide repeat-containi...    59   9e-07
ref|XP_002451732.1| hypothetical protein SORBIDRAFT_04g006810 [S...    58   2e-06
gb|EOX92255.1| Pentatricopeptide repeat (PPR) superfamily protei...    57   6e-06
ref|XP_006297147.1| hypothetical protein CARUB_v10013150mg [Caps...    57   6e-06
ref|XP_006857709.1| hypothetical protein AMTR_s00061p00173340 [A...    56   7e-06
gb|ESW11349.1| hypothetical protein PHAVU_008G022600g [Phaseolus...    56   9e-06

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 60.1 bits (144), Expect = 5e-07
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
 Frame = +3

Query: 9   VEDQKITPFFDTYSEVIKKLTQSGMLKEACKVFDVMKELNHFPELCVALAKPIIGLLSKS 188
           V+  ++ P+  TY  +I+KL +   L+EA  +  +MK+ NH P       +P +  +S+ 
Sbjct: 502 VDKARLRPWQATYKLLIEKLLEVRKLEEALNLLRLMKQHNHPP-----FPEPFVQYISRF 556

Query: 189 GTVDEAYSFVSKVK-QNGMSGKACIAMVEAFWKENRQSDAHELVSRLPRSIAKTPLITDI 365
           GTVD+A  F+  +  +   S  A + + ++F++  R S+A +L+ + P  I K P I+++
Sbjct: 557 GTVDDAADFLKALSVKEYPSTSAYLNVFQSFFRAGRHSEAKDLLFKCPHHIRKHPKISEL 616

Query: 366 TKTRSADKPKSEDPT 410
                    K+ED T
Sbjct: 617 -----FGSAKTEDAT 626


>ref|XP_004954664.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
           mitochondrial-like [Setaria italica]
          Length = 555

 Score = 59.3 bits (142), Expect = 9e-07
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
 Frame = +3

Query: 9   VEDQKITPFFDTYSEVIKKLTQSGMLKEACKVFDVMKELNHFPELCVALAKPIIGLLSKS 188
           + ++ + P+  TY  +I KL + G LK+A +V  +MK  + +P        P I  +SKS
Sbjct: 424 IAEKAVVPWQTTYKYLIHKLIRQGHLKQAFEVLGLMKS-HGYP----TFVDPFIPHISKS 478

Query: 189 GTVDEAYSFVSKVKQNGMSGK-ACIAMVEAFWKENRQSDAHELVSRLPRSIAKTPLITDI 365
           GT+D+A   ++     G+  +   + + +A +KE R   A +L+S+ P SI     + D+
Sbjct: 479 GTLDDALGLLNATSLRGLPSRIVYVRLFQALFKEERHEVAQQLLSQSPDSIQNHADVRDV 538

Query: 366 TKTRSADKP 392
                 ++P
Sbjct: 539 FNRMKLEEP 547


>ref|XP_002451732.1| hypothetical protein SORBIDRAFT_04g006810 [Sorghum bicolor]
           gi|241931563|gb|EES04708.1| hypothetical protein
           SORBIDRAFT_04g006810 [Sorghum bicolor]
          Length = 608

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
 Frame = +3

Query: 9   VEDQKITPFFDTYSEVIKKLTQSGMLKEACKVFDVMKELNHFPELCVALAKPIIGLLSKS 188
           V  + + P+  TY  +I  L + G LK+A +V  +MK  + +P    +   P I  +SKS
Sbjct: 477 VSKKIVVPWQTTYKYLIHNLIRQGHLKQAFEVLGLMKS-HGYP----SFIDPCITHISKS 531

Query: 189 GTVDEAYSFVSKVKQNGM-SGKACIAMVEAFWKENRQSDAHELVSRLPRSIAKTPLITDI 365
           GTVD+A   ++     G+ S  A + + +A  KE+R   A +L+S+ P SI     + DI
Sbjct: 532 GTVDDALGLLNATSSKGLPSRTAHLRLFQALLKEDRHEVAQQLLSQSPASIQNHADVRDI 591

Query: 366 TKTRSADKP 392
                 ++P
Sbjct: 592 FSRIKVEEP 600


>gb|EOX92255.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao]
          Length = 660

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
 Frame = +3

Query: 3   KSVEDQKITPFFDTYSEVIKKLTQSGMLKEACKVFDVMKELNHFPELCVALAKPIIGLLS 182
           K V + ++ P+  TY E+I+KL   G  ++   +  +MK+ + FP        P I  +S
Sbjct: 527 KYVSENQLRPWHTTYKELIRKLLAQGGFRDGLSLLGLMKD-HGFP----PFVDPFIDYVS 581

Query: 183 KSGTVDEAYSFVSKVKQNGMSGKACIAMV-EAFWKENRQSDAHELVSRLP 329
           KSG+ ++A +F+  +        + +  V EAF+K  RQ++A +L+S+ P
Sbjct: 582 KSGSSEDAIAFLKSMTSKRFPSLSVVLRVFEAFFKAARQNEAQDLLSKCP 631


>ref|XP_006297147.1| hypothetical protein CARUB_v10013150mg [Capsella rubella]
           gi|482565856|gb|EOA30045.1| hypothetical protein
           CARUB_v10013150mg [Capsella rubella]
          Length = 666

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
 Frame = +3

Query: 9   VEDQKITPFFDTYSEVI-----KKLTQSGMLKEACKVFDVMKELNHFPELCVALAKPIIG 173
           V+  ++ P+  TY  ++     KK+ + G  +EA  +  +MK     P        P + 
Sbjct: 524 VKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMKNQGFPP-----FVDPFLD 578

Query: 174 LLSKSGTVDEAYSFVSKVKQNGM-SGKACIAMVEAFWKENRQSDAHELVSRLPRSIAKTP 350
            LS SGT  EA++F+  V      S    + ++EA  K  R S+A +L+S  P  I +  
Sbjct: 579 YLSNSGTSKEAFAFLKAVTSKKFPSNSMALRVLEAMLKSARHSEAQDLLSMCPSYIRRNA 638

Query: 351 LITDITKTRSADKPKSEDPTESSPKVE 431
            + ++  +   DK   E P  +  ++E
Sbjct: 639 EVLELFNSMKPDKCSLEKPLPAPAQIE 665


>ref|XP_006857709.1| hypothetical protein AMTR_s00061p00173340 [Amborella trichopoda]
           gi|548861805|gb|ERN19176.1| hypothetical protein
           AMTR_s00061p00173340 [Amborella trichopoda]
          Length = 280

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
 Frame = +3

Query: 3   KSVEDQKITPFFDTYSEVIKKLTQSGMLKEACKVFDVMKELNHFPELCVALAKPIIGLLS 182
           K VE+  I P+  TY  +++KL     + +A K+  +MK  + FP        P    + 
Sbjct: 153 KVVENTGIKPWHTTYKTLVEKLIGQNRIGDALKLLGLMK-CHGFPPF----TDPFFEYIP 207

Query: 183 KSGTVDEAYS-FVSKVKQNGMSGKACIAMVEAFWKENRQSDAHELVSRLPRSIAKTPLIT 359
           KSGTVD+A   F +   +N  S    I M EAF K  R + AH+L+SR P  I       
Sbjct: 208 KSGTVDDAVGLFAAITVKNLPSTSVIIRMFEAFLKAGRFNVAHDLLSRSPGHIRNH---A 264

Query: 360 DITKTRSADKPK 395
           DI     A KP+
Sbjct: 265 DILNLFCAMKPQ 276


>gb|ESW11349.1| hypothetical protein PHAVU_008G022600g [Phaseolus vulgaris]
          Length = 629

 Score = 55.8 bits (133), Expect = 9e-06
 Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
 Frame = +3

Query: 9   VEDQKITPFFDTYSEVIKKLTQSGMLKEACKVFDVMKELNH-FPELCVALAKPIIGLLSK 185
           V ++++ P+  TY  ++ KL   G   +A  +  +M+  NH FP        P I  LSK
Sbjct: 498 VNEKQLKPWHSTYKLLVTKLLDQGGFADALPILGLMR--NHGFPPF----TDPFIEHLSK 551

Query: 186 SGTVDEAYSFVSKVKQNGM-SGKACIAMVEAFWKENRQSDAHELVSRLPRSI 338
           SG+ D+A  F+  +      S    + M+EAF+K  R  +AH  +S+ PR I
Sbjct: 552 SGSYDDAVLFLRAMTSKRFPSTSVFLRMLEAFFKHGRHEEAHNFLSKCPRFI 603