BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00000306
         (583 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004302291.1| PREDICTED: chloroplast stem-loop binding pro...   100   2e-19
gb|EMJ08534.1| hypothetical protein PRUPE_ppa007071mg [Prunus pe...    98   2e-18
ref|XP_006472242.1| PREDICTED: chloroplast stem-loop binding pro...    96   7e-18
ref|XP_006433572.1| hypothetical protein CICLE_v10001494mg [Citr...    96   7e-18
ref|XP_006433571.1| hypothetical protein CICLE_v10001494mg [Citr...    96   7e-18
gb|EOY11711.1| Chloroplast RNA binding [Theobroma cacao]               96   7e-18
ref|XP_006382356.1| hypothetical protein POPTR_0005s01370g [Popu...    96   9e-18
ref|XP_006417582.1| hypothetical protein EUTSA_v10007937mg [Eutr...    95   1e-17
ref|XP_006305088.1| hypothetical protein CARUB_v10009455mg [Caps...    95   1e-17
ref|XP_004146391.1| PREDICTED: chloroplast stem-loop binding pro...    95   1e-17
dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]      95   1e-17
ref|XP_002281395.1| PREDICTED: uncharacterized protein At1g09340...    95   1e-17
ref|XP_002512541.1| NAD dependent epimerase/dehydratase, putativ...    94   2e-17
ref|NP_172405.1| chloroplast stem-loop binding protein [Arabidop...    94   3e-17
emb|CAA71589.1| g5bf [Arabidopsis thaliana]                            94   3e-17
emb|CAA75602.1| putative RNA binding protein [Arabidopsis thaliana]    94   3e-17
gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]     94   3e-17
gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]                     94   3e-17
ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabido...    93   4e-17
gb|ABK96584.1| unknown [Populus trichocarpa x Populus deltoides]       93   6e-17

>ref|XP_004302291.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa b,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 380

 Score =  100 bits (250), Expect = 2e-19
 Identities = 49/61 (80%), Positives = 52/61 (85%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFASIDKA SVLGWKPEYDLV GL DSYN DF  G++RKEADFSTDDMIL K LV +
Sbjct: 320 DQHFFASIDKAKSVLGWKPEYDLVEGLADSYNLDFGRGTFRKEADFSTDDMILGKSLVLQ 379

Query: 401 S 399
           S
Sbjct: 380 S 380


>gb|EMJ08534.1| hypothetical protein PRUPE_ppa007071mg [Prunus persica]
          Length = 383

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 47/61 (77%), Positives = 52/61 (85%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFASIDKA SVLGWKPE+DLV GL DSYN DF  G++RKEADFSTDD+IL K LV +
Sbjct: 323 DQHFFASIDKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ 382

Query: 401 S 399
           S
Sbjct: 383 S 383


>ref|XP_006472242.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa b,
           chloroplastic-like [Citrus sinensis]
          Length = 380

 Score = 95.9 bits (237), Expect = 7e-18
 Identities = 45/61 (73%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G+YRKEADFSTDDMIL K LV +
Sbjct: 320 DQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGKKLVLQ 379

Query: 401 S 399
           +
Sbjct: 380 A 380


>ref|XP_006433572.1| hypothetical protein CICLE_v10001494mg [Citrus clementina]
           gi|557535694|gb|ESR46812.1| hypothetical protein
           CICLE_v10001494mg [Citrus clementina]
          Length = 381

 Score = 95.9 bits (237), Expect = 7e-18
 Identities = 45/61 (73%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G+YRKEADFSTDDMIL K LV +
Sbjct: 321 DQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGKKLVLQ 380

Query: 401 S 399
           +
Sbjct: 381 A 381


>ref|XP_006433571.1| hypothetical protein CICLE_v10001494mg [Citrus clementina]
           gi|557535693|gb|ESR46811.1| hypothetical protein
           CICLE_v10001494mg [Citrus clementina]
          Length = 380

 Score = 95.9 bits (237), Expect = 7e-18
 Identities = 45/61 (73%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G+YRKEADFSTDDMIL K LV +
Sbjct: 320 DQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGKKLVLQ 379

Query: 401 S 399
           +
Sbjct: 380 A 380


>gb|EOY11711.1| Chloroplast RNA binding [Theobroma cacao]
          Length = 379

 Score = 95.9 bits (237), Expect = 7e-18
 Identities = 46/61 (75%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFASI+KA  VLGW+PE+DLV GL DSYN DF  G+YRKEADFSTDDMIL K LV +
Sbjct: 319 DQHFFASIEKAKHVLGWEPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGKTLVLQ 378

Query: 401 S 399
           S
Sbjct: 379 S 379


>ref|XP_006382356.1| hypothetical protein POPTR_0005s01370g [Populus trichocarpa]
           gi|550337715|gb|ERP60153.1| hypothetical protein
           POPTR_0005s01370g [Populus trichocarpa]
          Length = 380

 Score = 95.5 bits (236), Expect = 9e-18
 Identities = 45/61 (73%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFASIDKA  VLGW+PE+DLV GL DSYN DF  G+YRKEADFSTDD+IL K LV +
Sbjct: 320 DQHFFASIDKARHVLGWEPEFDLVEGLADSYNLDFGTGTYRKEADFSTDDLILGKSLVLQ 379

Query: 401 S 399
           +
Sbjct: 380 A 380


>ref|XP_006417582.1| hypothetical protein EUTSA_v10007937mg [Eutrema salsugineum]
           gi|557095353|gb|ESQ35935.1| hypothetical protein
           EUTSA_v10007937mg [Eutrema salsugineum]
          Length = 379

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 44/61 (72%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV +
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378

Query: 401 S 399
           S
Sbjct: 379 S 379


>ref|XP_006305088.1| hypothetical protein CARUB_v10009455mg [Capsella rubella]
           gi|482573799|gb|EOA37986.1| hypothetical protein
           CARUB_v10009455mg [Capsella rubella]
          Length = 379

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 44/61 (72%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV +
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378

Query: 401 S 399
           S
Sbjct: 379 S 379


>ref|XP_004146391.1| PREDICTED: chloroplast stem-loop binding protein of 41 kDa b,
           chloroplastic-like [Cucumis sativus]
           gi|449480815|ref|XP_004156003.1| PREDICTED: chloroplast
           stem-loop binding protein of 41 kDa b,
           chloroplastic-like [Cucumis sativus]
          Length = 383

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 45/61 (73%), Positives = 52/61 (85%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFASI+KA SVLGWKPE+DLV GL DSYN DF  G++RKEADFSTDD+IL K LV +
Sbjct: 323 DQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLVLQ 382

Query: 401 S 399
           +
Sbjct: 383 A 383


>dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]
          Length = 379

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 44/61 (72%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV +
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378

Query: 401 S 399
           S
Sbjct: 379 S 379


>ref|XP_002281395.1| PREDICTED: uncharacterized protein At1g09340, chloroplastic [Vitis
           vinifera] gi|147773479|emb|CAN73432.1| hypothetical
           protein VITISV_032681 [Vitis vinifera]
           gi|296089806|emb|CBI39625.3| unnamed protein product
           [Vitis vinifera]
          Length = 378

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 45/58 (77%), Positives = 50/58 (86%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLV 408
           DQHFFASI+KA SVLGWKPE+DLV GL DSYN DF  G++RKEADFSTDD+IL K LV
Sbjct: 319 DQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTFRKEADFSTDDIILGKSLV 376


>ref|XP_002512541.1| NAD dependent epimerase/dehydratase, putative [Ricinus communis]
           gi|223548502|gb|EEF49993.1| NAD dependent
           epimerase/dehydratase, putative [Ricinus communis]
          Length = 381

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 44/61 (72%), Positives = 51/61 (83%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFAS+DKA  VLGW+PE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV +
Sbjct: 321 DQHFFASVDKAKHVLGWEPEFDLVEGLADSYNLDFGRGTFRKEADFTTDDMILGKSLVLQ 380

Query: 401 S 399
           S
Sbjct: 381 S 381


>ref|NP_172405.1| chloroplast stem-loop binding protein [Arabidopsis thaliana]
           gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
           Full=Chloroplast stem-loop binding protein of 41 kDa b,
           chloroplastic; Short=CSP41-b; AltName:
           Full=Heteroglycan-interacting protein 1.3; AltName:
           Full=Protein CHLOROPLAST RNA BINDING; AltName:
           Full=Protein Gb5f; Flags: Precursor
           gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
           [Arabidopsis thaliana]
           gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
           [Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
           Identical to gb|Y10557 g5bf gene from Arabidopsis
           thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
           gb|T22425, gb|N64934 and gb|T46767 come from this gene
           [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|17979099|gb|AAL47493.1| putative RNA-binding protein
           [Arabidopsis thaliana] gi|332190310|gb|AEE28431.1|
           chloroplast stem-loop binding protein [Arabidopsis
           thaliana]
          Length = 378

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 43/58 (74%), Positives = 49/58 (84%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLV 408
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376


>emb|CAA71589.1| g5bf [Arabidopsis thaliana]
          Length = 378

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 43/58 (74%), Positives = 49/58 (84%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLV 408
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376


>emb|CAA75602.1| putative RNA binding protein [Arabidopsis thaliana]
          Length = 374

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 43/58 (74%), Positives = 49/58 (84%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLV 408
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV
Sbjct: 315 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 372


>gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]
          Length = 378

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 43/58 (74%), Positives = 49/58 (84%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLV 408
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376


>gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]
          Length = 378

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 43/58 (74%), Positives = 49/58 (84%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLV 408
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDMIL K LV
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLV 376


>ref|XP_002889743.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp.
           lyrata] gi|297335585|gb|EFH66002.1| catalytic/ coenzyme
           binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 378

 Score = 93.2 bits (230), Expect = 4e-17
 Identities = 42/58 (72%), Positives = 49/58 (84%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLV 408
           DQHFFAS++KA  VLGWKPE+DLV GL DSYN DF  G++RKEADF+TDDM+L K LV
Sbjct: 319 DQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMVLSKKLV 376


>gb|ABK96584.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 380

 Score = 92.8 bits (229), Expect = 6e-17
 Identities = 44/61 (72%), Positives = 50/61 (81%)
 Frame = -3

Query: 581 DQHFFASIDKAFSVLGWKPEYDLVGGLVDSYNSDFSLGSYRKEADFSTDDMILEKMLVAK 402
           DQHFFASIDKA  VLGW+PE+DLV GL DSYN DF  G+YRKEADF TDD+IL K LV +
Sbjct: 320 DQHFFASIDKAKHVLGWEPEFDLVEGLADSYNLDFGRGTYRKEADFFTDDLILGKSLVLQ 379

Query: 401 S 399
           +
Sbjct: 380 A 380