BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00000206
         (612 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001235479.1| uncharacterized protein LOC100500004 [Glycin...    81   3e-13
ref|NP_001147391.1| photosystem II core complex proteins psbY [Z...    80   3e-13
gb|AFK46434.1| unknown [Lotus japonicus]                               80   4e-13
gb|ABK26111.1| unknown [Picea sitchensis] gi|116792769|gb|ABK264...    80   6e-13
gb|ABK22811.1| unknown [Picea sitchensis]                              80   6e-13
gb|ABK21316.1| unknown [Picea sitchensis] gi|116779793|gb|ABK214...    80   6e-13
ref|XP_004142959.1| PREDICTED: photosystem II core complex prote...    78   2e-12
gb|AFW74395.1| hypothetical protein ZEAMMB73_053443, partial [Ze...    78   2e-12
ref|NP_001147385.1| photosystem II core complex proteins psbY [Z...    78   2e-12
gb|AFW61341.1| photosystem II core complex protein psbY [Zea mays]     77   3e-12
ref|NP_001240940.1| uncharacterized protein LOC100779397 [Glycin...    77   3e-12
ref|NP_001147739.1| photosystem II core complex proteins psbY [Z...    77   3e-12
gb|ACN39867.1| unknown [Picea sitchensis]                              77   5e-12
ref|XP_004135291.1| PREDICTED: photosystem II core complex prote...    76   6e-12
ref|XP_003573314.1| PREDICTED: photosystem II core complex prote...    76   8e-12
ref|XP_002515034.1| photosystem II core complex proteins psbY, c...    76   8e-12
ref|XP_004972988.1| PREDICTED: photosystem II core complex prote...    75   1e-11
ref|XP_002444967.1| hypothetical protein SORBIDRAFT_07g002060 [S...    75   1e-11
gb|ESW31624.1| hypothetical protein PHAVU_002G253700g [Phaseolus...    74   2e-11
ref|XP_003601864.1| Photosystem II core complex proteins psbY [M...    74   2e-11

>ref|NP_001235479.1| uncharacterized protein LOC100500004 [Glycine max]
           gi|255628451|gb|ACU14570.1| unknown [Glycine max]
          Length = 192

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 44/85 (51%), Positives = 53/85 (62%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLV 182
           ALNQLNRMRS K V            V +P+A  A A +    +A   S+D RG L+  V
Sbjct: 108 ALNQLNRMRSTKGVIIGLGLGGLAGLVAAPHASAAAASEVAA-MAEAASNDNRGQLLLFV 166

Query: 183 LAPAVGWVLFNILQPALNQLNRMRS 257
           + PA+ WVL+NILQPALNQLNRMRS
Sbjct: 167 VTPAIAWVLYNILQPALNQLNRMRS 191



 Score = 59.3 bits (142), Expect = 8e-07
 Identities = 34/64 (53%), Positives = 40/64 (62%)
 Frame = +3

Query: 105 AKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIAEIQ 284
           A A Q + D+A     D RG  + L + PA+GWVLFNILQPALNQLNRMRS    I  + 
Sbjct: 70  AFAVQQIADIA---EGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLG 126

Query: 285 FGPL 296
            G L
Sbjct: 127 LGGL 130


>ref|NP_001147391.1| photosystem II core complex proteins psbY [Zea mays]
           gi|195610958|gb|ACG27309.1| photosystem II core complex
           proteins psbY [Zea mays]
          Length = 176

 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEG-SSDGRGGLIFL 179
           ALNQLNRMRS+++V            + +P    A   Q L  +AA   + D RG L+ +
Sbjct: 90  ALNQLNRMRSSQAVAAGLGLGAAAAGMAAPPEASAAVVQDLAAIAAAAPADDSRGLLLLI 149

Query: 180 VLAPAVGWVLFNILQPALNQLNRMRSN 260
           V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 150 VVAPAIGWVLFNILQPALNQLNRMRSD 176



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 29/42 (69%), Positives = 36/42 (85%)
 Frame = +3

Query: 135 AAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 260
           AA+   D RG L+ +V+APA+GWVL+NILQPALNQLNRMRS+
Sbjct: 59  AADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSS 100


>gb|AFK46434.1| unknown [Lotus japonicus]
          Length = 205

 Score = 80.1 bits (196), Expect = 4e-13
 Identities = 46/89 (51%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSP--YAEDAKAQQA--LFDLAAEGSSDGRGGL 170
           ALNQ+NRMR+ K V              S   +A +A A +   + D AA G SD RG L
Sbjct: 116 ALNQINRMRNTKGVIVGLGLGLGGLAAGSGMLWAPEASAGELGIIADAAAAGGSDNRGQL 175

Query: 171 IFLVLAPAVGWVLFNILQPALNQLNRMRS 257
           +  V+APA+GWVLFNILQPALNQ+NRMRS
Sbjct: 176 LLFVVAPAIGWVLFNILQPALNQINRMRS 204


>gb|ABK26111.1| unknown [Picea sitchensis] gi|116792769|gb|ABK26490.1| unknown
           [Picea sitchensis] gi|148906010|gb|ABR16165.1| unknown
           [Picea sitchensis] gi|148906227|gb|ABR16269.1| unknown
           [Picea sitchensis] gi|148907833|gb|ABR17041.1| unknown
           [Picea sitchensis] gi|148908345|gb|ABR17286.1| unknown
           [Picea sitchensis] gi|224285567|gb|ACN40502.1| unknown
           [Picea sitchensis]
          Length = 207

 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSS-DGRGGLIFL 179
           ALNQ+NRM+ A  V             F    E+A A+Q +FDLAA+ ++ D RG L+ +
Sbjct: 121 ALNQINRMKGAGLVAFAGLGAAGGA-AFLSNPEEAHAEQLVFDLAAKAANNDNRGLLLLI 179

Query: 180 VLAPAVGWVLFNILQPALNQLNRMRS 257
           V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 180 VVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 30/52 (57%), Positives = 38/52 (73%)
 Frame = +3

Query: 99  EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 254
           + A A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSAAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>gb|ABK22811.1| unknown [Picea sitchensis]
          Length = 206

 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSS-DGRGGLIFL 179
           ALNQ+NRM+ A  V             F    E+A A+Q +FDLAA+ ++ D RG L+ +
Sbjct: 121 ALNQINRMKGAGLVAFAGLGAAGGA-AFLSNPEEAHAEQLVFDLAAKAANNDNRGLLLLI 179

Query: 180 VLAPAVGWVLFNILQPALNQLNRMRS 257
           V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 180 VVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 30/52 (57%), Positives = 38/52 (73%)
 Frame = +3

Query: 99  EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 254
           + A A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSAAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>gb|ABK21316.1| unknown [Picea sitchensis] gi|116779793|gb|ABK21432.1| unknown
           [Picea sitchensis] gi|116780291|gb|ABK21621.1| unknown
           [Picea sitchensis] gi|116782013|gb|ABK22335.1| unknown
           [Picea sitchensis] gi|116782043|gb|ABK22345.1| unknown
           [Picea sitchensis] gi|116784459|gb|ABK23350.1| unknown
           [Picea sitchensis] gi|116791697|gb|ABK26075.1| unknown
           [Picea sitchensis] gi|116791715|gb|ABK26082.1| unknown
           [Picea sitchensis] gi|224285486|gb|ACN40464.1| unknown
           [Picea sitchensis] gi|224285621|gb|ACN40529.1| unknown
           [Picea sitchensis]
          Length = 206

 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSS-DGRGGLIFL 179
           ALNQ+NRM+ A  V             F    E+A A+Q +FDLAA+ ++ D RG L+ +
Sbjct: 121 ALNQINRMKGAGLVAFAGLGAAGGA-AFLSNPEEAHAEQLVFDLAAKAANNDNRGLLLLI 179

Query: 180 VLAPAVGWVLFNILQPALNQLNRMRS 257
           V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 180 VVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 30/52 (57%), Positives = 38/52 (73%)
 Frame = +3

Query: 99  EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 254
           + A A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSAAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>ref|XP_004142959.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Cucumis sativus]
           gi|449494514|ref|XP_004159566.1| PREDICTED: photosystem
           II core complex proteins psbY, chloroplastic-like
           [Cucumis sativus]
          Length = 253

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 46/85 (54%), Positives = 53/85 (62%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLV 182
           ALNQ+NRMRS K V             F  YA DA A +    +A   SSD RG L+  V
Sbjct: 170 ALNQINRMRSDKGVIIGLGLGGLTASGFM-YAPDASASEIAM-IADASSSDSRGQLLLFV 227

Query: 183 LAPAVGWVLFNILQPALNQLNRMRS 257
           +APA+ WVL+NILQPALNQLNRMRS
Sbjct: 228 VAPAILWVLYNILQPALNQLNRMRS 252



 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 35/67 (52%), Positives = 45/67 (67%)
 Frame = +3

Query: 96  AEDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIA 275
           ++ A A Q + ++AA+G  D RG  + L L PAV WVLFNILQPALNQ+NRMRS+   I 
Sbjct: 128 SDPAFAAQQIAEIAADG--DNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVII 185

Query: 276 EIQFGPL 296
            +  G L
Sbjct: 186 GLGLGGL 192


>gb|AFW74395.1| hypothetical protein ZEAMMB73_053443, partial [Zea mays]
          Length = 184

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 45/88 (51%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFS--PYAEDAKAQQALFDLAAEGSSDGRGGLIF 176
           ALNQLNRMRS+++V              +  P A  A  Q      AA  + D RG L+ 
Sbjct: 97  ALNQLNRMRSSQAVAAGLGLGAAAAAGMAAPPEASAAVVQDLAAIAAAAPADDSRGLLLL 156

Query: 177 LVLAPAVGWVLFNILQPALNQLNRMRSN 260
           +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 157 IVVAPAIGWVLFNILQPALNQLNRMRSD 184



 Score = 65.9 bits (159), Expect = 9e-09
 Identities = 32/48 (66%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
 Frame = +3

Query: 120 ALFDLAA-EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 260
           AL D+AA +   D RG L+ +V+APA+GWVL+NILQPALNQLNRMRS+
Sbjct: 60  ALADVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSS 107


>ref|NP_001147385.1| photosystem II core complex proteins psbY [Zea mays]
           gi|195610810|gb|ACG27235.1| photosystem II core complex
           proteins psbY [Zea mays] gi|413941745|gb|AFW74394.1|
           photosystem II core complex protein psbY [Zea mays]
          Length = 191

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 45/88 (51%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFS--PYAEDAKAQQALFDLAAEGSSDGRGGLIF 176
           ALNQLNRMRS+++V              +  P A  A  Q      AA  + D RG L+ 
Sbjct: 104 ALNQLNRMRSSQAVAAGLGLGAAAAAGMAAPPEASAAVVQDLAAIAAAAPADDSRGLLLL 163

Query: 177 LVLAPAVGWVLFNILQPALNQLNRMRSN 260
           +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 164 IVVAPAIGWVLFNILQPALNQLNRMRSD 191



 Score = 65.9 bits (159), Expect = 9e-09
 Identities = 32/48 (66%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
 Frame = +3

Query: 120 ALFDLAA-EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 260
           AL D+AA +   D RG L+ +V+APA+GWVL+NILQPALNQLNRMRS+
Sbjct: 67  ALADVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSS 114


>gb|AFW61341.1| photosystem II core complex protein psbY [Zea mays]
          Length = 196

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSS-----DGRGG 167
           ALNQLNRMRS   V              +P A  A A Q L  LAA  ++     D RG 
Sbjct: 106 ALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASAAAAAQDLAALAAAAAAAAPADDNRGL 165

Query: 168 LIFLVLAPAVGWVLFNILQPALNQLNRMRSN 260
           L+ +V+ PA+GWVLFNILQPALNQ+NRM+S+
Sbjct: 166 LLLIVVTPAIGWVLFNILQPALNQINRMKSD 196



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
 Frame = +3

Query: 96  AEDAKAQQALFDLAA--EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 257
           ++ A A Q + D+AA  +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 60  SDAALAAQRVADVAAAADSGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 115


>ref|NP_001240940.1| uncharacterized protein LOC100779397 [Glycine max]
           gi|255646582|gb|ACU23765.1| unknown [Glycine max]
          Length = 187

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 43/85 (50%), Positives = 52/85 (61%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLV 182
           ALNQLNRMRS K V              +P+A  A ++      AA  +SD RG L+  V
Sbjct: 108 ALNQLNRMRSTKGVIIGLGLGGLAGLAAAPHAWAAASE------AAAAASDNRGQLLLFV 161

Query: 183 LAPAVGWVLFNILQPALNQLNRMRS 257
           + PA+ WVL+NILQPALNQLNRMRS
Sbjct: 162 VTPAIAWVLYNILQPALNQLNRMRS 186



 Score = 59.3 bits (142), Expect = 8e-07
 Identities = 34/64 (53%), Positives = 40/64 (62%)
 Frame = +3

Query: 105 AKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIAEIQ 284
           A A Q + D+A     D RG  + L + PA+GWVLFNILQPALNQLNRMRS    I  + 
Sbjct: 70  AFAVQQIADIA---EGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLG 126

Query: 285 FGPL 296
            G L
Sbjct: 127 LGGL 130


>ref|NP_001147739.1| photosystem II core complex proteins psbY [Zea mays]
           gi|195613400|gb|ACG28530.1| photosystem II core complex
           proteins psbY [Zea mays]
          Length = 196

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSS-----DGRGG 167
           ALNQLNRMRS   V              +P A  A A Q L  LAA  ++     D RG 
Sbjct: 106 ALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASAAAAAQDLAALAAAAAAAAPADDNRGL 165

Query: 168 LIFLVLAPAVGWVLFNILQPALNQLNRMRSN 260
           L+ +V+ PA+GWVLFNILQPALNQ+NRM+S+
Sbjct: 166 LLLIVVTPAIGWVLFNILQPALNQINRMKSD 196



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
 Frame = +3

Query: 96  AEDAKAQQALFDLAA--EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 257
           ++ A A Q + D+AA  +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 60  SDAALAAQRVADVAAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 115


>gb|ACN39867.1| unknown [Picea sitchensis]
          Length = 206

 Score = 76.6 bits (187), Expect = 5e-12
 Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSS-DGRGGLIFL 179
           ALNQ+NRM+ A  V             F    E+A A+Q +FDLAA+ ++ D R  L+ +
Sbjct: 121 ALNQINRMKGAGLVAFAGLGAAGGA-AFLSNPEEAHAEQLVFDLAAKAANNDNRRLLLLI 179

Query: 180 VLAPAVGWVLFNILQPALNQLNRMRS 257
           V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 180 VVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 29/52 (55%), Positives = 37/52 (71%)
 Frame = +3

Query: 99  EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 254
           +   A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSTAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>ref|XP_004135291.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Cucumis sativus]
          Length = 179

 Score = 76.3 bits (186), Expect = 6e-12
 Identities = 45/87 (51%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXX--VFSPYAEDAKAQQALFDLAAEGSSDGRGGLIF 176
           ALNQ+NRMR+ K+V              V +P A           +AAE  SDGRG L+ 
Sbjct: 103 ALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEA-----------MAAEAGSDGRGQLLL 151

Query: 177 LVLAPAVGWVLFNILQPALNQLNRMRS 257
           +V+APA+ WVLFNILQPALNQLNRMRS
Sbjct: 152 IVVAPAIAWVLFNILQPALNQLNRMRS 178



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 34/64 (53%), Positives = 39/64 (60%)
 Frame = +3

Query: 105 AKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIAEIQ 284
           A A Q + DLA     D RG  + L L PAV WVLFNILQPALNQ+NRMR+    I  + 
Sbjct: 65  ALAAQQIADLA---EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGLG 121

Query: 285 FGPL 296
            G L
Sbjct: 122 LGGL 125


>ref|XP_003573314.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Brachypodium distachyon]
          Length = 198

 Score = 75.9 bits (185), Expect = 8e-12
 Identities = 42/86 (48%), Positives = 51/86 (59%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLV 182
           ALNQLN+MRS K++                 A  A  + A    AA  + D RG L+  V
Sbjct: 113 ALNQLNKMRSEKALVAGLGLGAAMAAAAPERASAAAGEIAAMAAAAAPADDNRGLLLLFV 172

Query: 183 LAPAVGWVLFNILQPALNQLNRMRSN 260
           +APA+GWVLFNILQPALNQL +MRSN
Sbjct: 173 VAPALGWVLFNILQPALNQLEKMRSN 198



 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = +3

Query: 96  AEDAKAQQALFDLAAEG-SSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQI 272
           ++ A A Q + D+AA   + D RG L+ +V++PA+ WVL+NILQPALNQLN+MRS    +
Sbjct: 68  SDAAMAAQRVADMAAAAPADDNRGLLLLIVVSPALAWVLYNILQPALNQLNKMRSEKALV 127

Query: 273 AEIQFG 290
           A +  G
Sbjct: 128 AGLGLG 133


>ref|XP_002515034.1| photosystem II core complex proteins psbY, chloroplast precursor
           [Ricinus communis] gi|223546085|gb|EEF47588.1|
           photosystem II core complex proteins psbY, chloroplast
           precursor [Ricinus communis]
          Length = 195

 Score = 75.9 bits (185), Expect = 8e-12
 Identities = 41/85 (48%), Positives = 53/85 (62%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLV 182
           ALNQ+NRMR  K V             F   A +A A + +  + A+ +SD RG L+  V
Sbjct: 111 ALNQINRMRETKGVIIGLGLGGLAATGFMAAAPEASASENIA-MIADAASDNRGQLLLFV 169

Query: 183 LAPAVGWVLFNILQPALNQLNRMRS 257
           +APA+ WVL+NILQPALNQ+NRMRS
Sbjct: 170 VAPAILWVLYNILQPALNQINRMRS 194


>ref|XP_004972988.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Setaria italica]
          Length = 197

 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSS---DGRGGLI 173
           ALNQLNRMRS   +              +   E + A Q L  LAA  ++   D RG L+
Sbjct: 109 ALNQLNRMRSQAVIAGVGLGAAATAAGMACAPEASAAVQDLAALAAAAAAPADDNRGLLL 168

Query: 174 FLVLAPAVGWVLFNILQPALNQLNRMRSN 260
            +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 169 LIVVAPAIGWVLFNILQPALNQLNRMRSD 197



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 34/55 (61%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +3

Query: 96  AEDAKAQQALFDLAA-EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 257
           ++ A A Q + D+AA +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 64  SDAALAAQRVADVAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 118


>ref|XP_002444967.1| hypothetical protein SORBIDRAFT_07g002060 [Sorghum bicolor]
           gi|241941317|gb|EES14462.1| hypothetical protein
           SORBIDRAFT_07g002060 [Sorghum bicolor]
          Length = 203

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 47/89 (52%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFS--PYAEDAKAQQALFDLAAEG-SSDGRGGLI 173
           ALNQLNRMRS   V              +  P A  A + Q L  LAA   + D RG L+
Sbjct: 115 ALNQLNRMRSQAVVAGLGLGAAATAAGMASPPEASAAASVQDLAALAAAAPADDSRGLLL 174

Query: 174 FLVLAPAVGWVLFNILQPALNQLNRMRSN 260
            +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 175 LIVVAPAIGWVLFNILQPALNQLNRMRSD 203



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
 Frame = +3

Query: 105 AKAQQALFDLAA--EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 257
           A +  AL D+AA  +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 72  ASSDAALADVAAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 124


>gb|ESW31624.1| hypothetical protein PHAVU_002G253700g [Phaseolus vulgaris]
          Length = 189

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 41/85 (48%), Positives = 51/85 (60%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLV 182
           ALNQ+NRMRS K +            + +P      A  A     AE +SD RG L+  V
Sbjct: 108 ALNQINRMRSTKGLIIGLGLGGLAGLMAAP----PHAAAAEVASIAEAASDNRGQLLLFV 163

Query: 183 LAPAVGWVLFNILQPALNQLNRMRS 257
           + PA+GWVL+NILQPALNQ+NRMRS
Sbjct: 164 VTPAIGWVLYNILQPALNQINRMRS 188



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 33/64 (51%), Positives = 40/64 (62%)
 Frame = +3

Query: 105 AKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIAEIQ 284
           A A Q + D+A     D RG  + L + PA+GWVLFNILQPALNQ+NRMRS    I  + 
Sbjct: 70  AFAVQQIADIA---EGDNRGLALLLPIIPAIGWVLFNILQPALNQINRMRSTKGLIIGLG 126

Query: 285 FGPL 296
            G L
Sbjct: 127 LGGL 130


>ref|XP_003601864.1| Photosystem II core complex proteins psbY [Medicago truncatula]
           gi|355490912|gb|AES72115.1| Photosystem II core complex
           proteins psbY [Medicago truncatula]
          Length = 193

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 42/86 (48%), Positives = 54/86 (62%)
 Frame = +3

Query: 3   ALNQLNRMRSAKSVXXXXXXXXXXXXVFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLV 182
           ALNQ+NRMR+AK V                 +E + ++  L   AA GS D RG L+  V
Sbjct: 109 ALNQINRMRNAKGVIVGLGLGLGGLAASGMVSEASASEIGLIADAAAGS-DNRGTLLLFV 167

Query: 183 LAPAVGWVLFNILQPALNQLNRMRSN 260
           +APA+ WVL+NILQPALNQ+NRMRS+
Sbjct: 168 VAPAILWVLYNILQPALNQINRMRSD 193



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +3

Query: 81  VFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 257
           +FS  A  + A  A   +A     D RG L+  V+APA+GWVLFNILQPALNQ+NRMR+
Sbjct: 61  IFSSLAT-SDAAFAAQQIAEIAEGDNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRN 118