BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00000178
         (622 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMC89649.1| Putative ubiquitin thioesterase L96, partial [Col...    57   2e-06
gb|ELR54012.1| hypothetical protein M91_03060, partial [Bos mutus]     56   7e-06

>gb|EMC89649.1| Putative ubiquitin thioesterase L96, partial [Columba livia]
          Length = 265

 Score = 57.0 bits (136), Expect(2) = 2e-06
 Identities = 49/141 (34%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
 Frame = +2

Query: 239 HPLSQHRPLNPPL-------THHLSHQSTHPRSTPNHHPTMSPRCTPS--PPRH-HTXXX 388
           HP S H P+NP +       TH   H STHP   P+ HP++ P   PS  P  H  T   
Sbjct: 59  HP-STHPPINPTIHPPTHSSTHSFIHPSTHPPIHPSIHPSIPPSIHPSTHPSIHPSTHPS 117

Query: 389 XXXXXXXXXXXXXXRSTSPRLSLS-HQSTHPRSTPNHLPTMSLRCTPSL-PRHHTSLLQS 562
                          S  P + LS H STHP + P+  P++     PS+ P  H S+  S
Sbjct: 118 TYPSIHPSVHPSIHLSIHPSVCLSTHPSTHPSTHPSIHPSIHPSIHPSIHPSIHPSIHPS 177

Query: 563 -HQSTHPRSTPSL-PRHHTSL 619
            H S HP   PS+ P  H S+
Sbjct: 178 IHPSIHPSIHPSIHPSIHPSI 198



 Score = 21.2 bits (43), Expect(2) = 2e-06
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 117 HAPRYPQATPGLHTTQAHP*APNPP 191
           H P YP   P +H    HP + +PP
Sbjct: 15  HPPTYPSVHPSIH-PPLHP-SIHPP 37


>gb|ELR54012.1| hypothetical protein M91_03060, partial [Bos mutus]
          Length = 212

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 49/140 (35%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
 Frame = +2

Query: 224 PLTPRHPLSQHRPLNP---PLTHHLSHQSTHPRSTPNHHPTMSPRCTPS--PPRHHTXXX 388
           P+ P   LS H P++P   P  H   H STHP   P+ HP++ P   PS  PP H     
Sbjct: 86  PIHPPTHLSIHPPIHPSIHPSIHPPIHPSTHPPIYPSIHPSIHPSIHPSTYPPIH----- 140

Query: 389 XXXXXXXXXXXXXXRSTSPRLSLS-HQSTHPRSTPN-HLPTMSLRCTPSLPRHHTSLLQS 562
                          S  P + LS H  THP   P+ H P       P  P  H S+  S
Sbjct: 141 ----------PPTHLSIHPSVHLSTHPPTHPSIHPSIHPPIHPSTHPPIYPSIHPSIHPS 190

Query: 563 -HQSTHPRSTPSL-PRHHTS 616
            H STHP + PS+ P  H S
Sbjct: 191 IHLSTHPPTHPSIHPSTHLS 210