BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00000034
         (1526 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   891   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   890   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   890   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   890   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   889   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   885   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   882   0.0  
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 874   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   867   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   746   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   671   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   637   e-180
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             605   e-170
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   605   e-170
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   548   e-153
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   531   e-148
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   530   e-148
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 529   e-147
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               528   e-147
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 528   e-147

>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  891 bits (2303), Expect = 0.0
 Identities = 439/508 (86%), Positives = 460/508 (90%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NLAISV
Sbjct: 598  LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
            + P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT I
Sbjct: 718  RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAI 777

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD
Sbjct: 778  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 837

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE
Sbjct: 838  AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 897

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF+                PVED TTTLDDFKE L DKF
Sbjct: 898  KLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKF 957

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKK
Sbjct: 958  DREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKK 1017

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NY KAMKLP EQP+FSEDLW
Sbjct: 1018 DLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  890 bits (2299), Expect = 0.0
 Identities = 438/508 (86%), Positives = 459/508 (90%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NLAISV
Sbjct: 598  LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
            + P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT I
Sbjct: 718  RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAI 777

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD
Sbjct: 778  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 837

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE
Sbjct: 838  AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 897

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF+                PVED TTTLDDFKE L DKF
Sbjct: 898  KLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKF 957

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKK
Sbjct: 958  DREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKK 1017

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NY KAMKLP EQP+FSEDLW
Sbjct: 1018 DLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  890 bits (2299), Expect = 0.0
 Identities = 438/508 (86%), Positives = 459/508 (90%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NLAISV
Sbjct: 598  LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
            + P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT I
Sbjct: 718  RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAI 777

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD
Sbjct: 778  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 837

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE
Sbjct: 838  AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 897

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF+                PVED TTTLDDFKE L DKF
Sbjct: 898  KLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKF 957

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKK
Sbjct: 958  DREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKK 1017

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NY KAMKLP EQP+FSEDLW
Sbjct: 1018 DLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  890 bits (2299), Expect = 0.0
 Identities = 438/508 (86%), Positives = 459/508 (90%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NLAISV
Sbjct: 598  LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
            + P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT I
Sbjct: 718  RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAI 777

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD
Sbjct: 778  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 837

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE
Sbjct: 838  AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 897

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF+                PVED TTTLDDFKE L DKF
Sbjct: 898  KLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKF 957

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKK
Sbjct: 958  DREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKK 1017

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NY KAMKLP EQP+FSEDLW
Sbjct: 1018 DLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  889 bits (2297), Expect = 0.0
 Identities = 438/508 (86%), Positives = 459/508 (90%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N   NLAISV
Sbjct: 598  LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
            + P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT I
Sbjct: 718  RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAI 777

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            FSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD
Sbjct: 778  FSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 837

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE
Sbjct: 838  AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 897

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF+                PVED TTTLDDFKE L DKF
Sbjct: 898  KLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKF 957

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKK
Sbjct: 958  DREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKK 1017

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NY KAMKLP EQP+FSEDLW
Sbjct: 1018 DLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  885 bits (2288), Expect = 0.0
 Identities = 436/508 (85%), Positives = 459/508 (90%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P ++++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILST 597

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLT+N   NLAISV
Sbjct: 598  LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISV 657

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCS 717

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
            + P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT I
Sbjct: 718  RCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAI 777

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PGLHLLVPSLVKKAAFTD
Sbjct: 778  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTD 837

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE
Sbjct: 838  AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 897

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF+                PVED TTTLDDFKE L DKF
Sbjct: 898  KLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKF 957

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKK
Sbjct: 958  DREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKK 1017

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NY KAMKLP EQP+FSEDLW
Sbjct: 1018 DLGDILWENYRKAMKLPSEQPDFSEDLW 1045


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  882 bits (2279), Expect = 0.0
 Identities = 433/508 (85%), Positives = 456/508 (89%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++++T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIIST 597

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML +N   NLAISV
Sbjct: 598  LRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISV 657

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
            + P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT I
Sbjct: 718  RCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAI 777

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            FSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTD
Sbjct: 778  FSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 837

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE
Sbjct: 838  AGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 897

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF+                PVED TTTLDDFKE L DKF
Sbjct: 898  KLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKF 957

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKK
Sbjct: 958  DREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKK 1017

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NY KAMKLP EQP+FSEDLW
Sbjct: 1018 DLGDILWENYRKAMKLPNEQPDFSEDLW 1045


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  874 bits (2258), Expect = 0.0
 Identities = 428/499 (85%), Positives = 452/499 (90%)
 Frame = -2

Query: 1498 KLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPT 1319
            K   +GFEALEIQTDPSTG+ IMPITD R+LP+A +P HW+ P   K++ TLR+LNRFPT
Sbjct: 535  KAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPT 594

Query: 1318 SWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGK 1139
             W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLTDN   + AISVIHGAGGSGK
Sbjct: 595  PWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGK 654

Query: 1138 SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDD 959
            SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ P+VIFDD
Sbjct: 655  SQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDD 714

Query: 958  YGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYI 779
            YGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYI
Sbjct: 715  YGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYI 774

Query: 778  NATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYA 599
            NATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYA
Sbjct: 775  NATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYA 834

Query: 598  GCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 419
            GCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEATPYLK
Sbjct: 835  GCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLK 894

Query: 418  TFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAH 239
            TFLSLVREDKI EFS                PVE+ TT LDDF+E L DKF+REIFTEAH
Sbjct: 895  TFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREIFTEAH 954

Query: 238  GHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWAN 59
            GHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDILW N
Sbjct: 955  GHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWTN 1014

Query: 58   YHKAMKLPKEQPEFSEDLW 2
            YHKAM LPKEQP+FSE+LW
Sbjct: 1015 YHKAMNLPKEQPDFSEELW 1033


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  867 bits (2240), Expect = 0.0
 Identities = 426/508 (83%), Positives = 453/508 (89%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTT 1346
            TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATLP HW    L ++L+T
Sbjct: 543  TLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILST 602

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            LRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N    LAISV
Sbjct: 603  LRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISV 662

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S
Sbjct: 663  IHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSS 722

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
             SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI
Sbjct: 723  HSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTI 782

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            +S  SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PGLHLLVPSL+KKAAFTD
Sbjct: 783  YSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTD 842

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
            AGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWE
Sbjct: 843  AGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWE 902

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLKTFLSLVREDKI EF                 PVE+  TTLDDFKE L DKF
Sbjct: 903  KLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKF 962

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            +REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKK
Sbjct: 963  DREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKK 1022

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            DLGDILW NYH+AM LPKEQP+FSEDLW
Sbjct: 1023 DLGDILWVNYHRAMGLPKEQPDFSEDLW 1050


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  746 bits (1926), Expect = 0.0
 Identities = 368/509 (72%), Positives = 416/509 (81%), Gaps = 1/509 (0%)
 Frame = -2

Query: 1525 TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPG-LSKVLT 1349
            TLPW AWLP L ALGFEA EIQTDP     IMPITD++ LP  T  E+ +      KV+ 
Sbjct: 518  TLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVI 577

Query: 1348 TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAIS 1169
            TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LT+     L +S
Sbjct: 578  TLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLS 637

Query: 1168 VIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVC 989
            VIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV 
Sbjct: 638  VIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVS 697

Query: 988  SKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATT 809
            S +P+VIFDDYGKLPQG++EAFA+    L+L ILTGDPRQSTHHE+NE+A+I++L PAT 
Sbjct: 698  STAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATK 757

Query: 808  IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFT 629
            IFS L RYYINATHRN K LANKLGVYSSN  PL V+YGF+P+PGLHLLVPSLVKKAAF 
Sbjct: 758  IFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFA 817

Query: 628  DAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFW 449
            DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFW
Sbjct: 818  DAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFW 877

Query: 448  EKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDK 269
            EKLEATPYLKTFLSLVRE K+ EF+                PVE+ + TL   ++SL+DK
Sbjct: 878  EKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADK 937

Query: 268  FEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAK 89
            ++REI    HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AK
Sbjct: 938  YDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAK 997

Query: 88   KDLGDILWANYHKAMKLPKEQPEFSEDLW 2
            KDLGD+LW NYH+AMKLPKEQP+FS +LW
Sbjct: 998  KDLGDVLWENYHRAMKLPKEQPDFSPELW 1026


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  671 bits (1732), Expect = 0.0
 Identities = 329/376 (87%), Positives = 346/376 (92%)
 Frame = -2

Query: 1129 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 950
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 949  LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 770
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 769  HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 590
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 589  GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 410
            GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240

Query: 409  SLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 230
            SLVRED++AEFS                PVED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241  SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300

Query: 229  NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 50
            NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301  NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360

Query: 49   AMKLPKEQPEFSEDLW 2
            AMKLP EQP+FSEDLW
Sbjct: 361  AMKLPNEQPDFSEDLW 376


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  637 bits (1644), Expect = e-180
 Identities = 314/507 (61%), Positives = 386/507 (76%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 1343
            LPW  W+PKLNALGFEA E Q  P T  +IMPITD+    K  +P H       ++L  L
Sbjct: 618  LPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLL 673

Query: 1342 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1163
            ++L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  D+    + +SVI
Sbjct: 674  KALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVI 733

Query: 1162 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 983
            HGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + 
Sbjct: 734  HGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTN 793

Query: 982  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 803
            +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IF
Sbjct: 794  APSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIF 853

Query: 802  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 623
            S+ SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KKAAF++A
Sbjct: 854  SQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEA 913

Query: 622  GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 443
            GHK STYAGCQGITA K+QILLD++T MC++EVLYTALSRAVDSIHF+N+   SS FWEK
Sbjct: 914  GHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEK 973

Query: 442  LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFE 263
            LEATPYLKTFLS+VREDKI E+                 PVE+  T L++F E L+ K E
Sbjct: 974  LEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHE 1033

Query: 262  REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 83
            REIF E+HGHTNCVQ D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD
Sbjct: 1034 REIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKD 1093

Query: 82   LGDILWANYHKAMKLPKEQPEFSEDLW 2
            +GDILW NY +AM LP++   F E+LW
Sbjct: 1094 IGDILWLNYKRAMHLPEDPIPF-EELW 1119


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  605 bits (1559), Expect = e-170
 Identities = 309/508 (60%), Positives = 363/508 (71%), Gaps = 1/508 (0%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGLSKVLTT 1346
            LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H        V+  
Sbjct: 551  LPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGV 604

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +   + +SV
Sbjct: 605  LEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSV 664

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T+ERAF   
Sbjct: 665  IHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGV 724

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
             SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS+LAPAT +
Sbjct: 725  SSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEV 784

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL+KK+A+ +
Sbjct: 785  FQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGE 844

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
             GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+    S+FWE
Sbjct: 845  MGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWE 904

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLK FLS VRE+ IA                   PVE+ +  L  + E + +KF
Sbjct: 905  KLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAYMEKVPEKF 964

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            EREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  KK
Sbjct: 965  EREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYRKK 1024

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            D+GDILW +Y KAM LP+E   FSEDLW
Sbjct: 1025 DIGDILWLHYKKAMTLPEEPLPFSEDLW 1052


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  605 bits (1559), Expect = e-170
 Identities = 309/508 (60%), Positives = 363/508 (71%), Gaps = 1/508 (0%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGLSKVLTT 1346
            LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H        V+  
Sbjct: 551  LPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGV 604

Query: 1345 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1166
            L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +   + +SV
Sbjct: 605  LEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSV 664

Query: 1165 IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 986
            IHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T+ERAF   
Sbjct: 665  IHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGV 724

Query: 985  KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 806
             SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS+LAPAT +
Sbjct: 725  SSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEV 784

Query: 805  FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 626
            F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL+KK+A+ +
Sbjct: 785  FQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGE 844

Query: 625  AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 446
             GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+    S+FWE
Sbjct: 845  MGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWE 904

Query: 445  KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKF 266
            KLEATPYLK FLS VRE+ IA                   PVE+ +  L  + E + +KF
Sbjct: 905  KLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKVPEKF 964

Query: 265  EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 86
            EREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  KK
Sbjct: 965  EREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKKK 1024

Query: 85   DLGDILWANYHKAMKLPKEQPEFSEDLW 2
            D+GDILW +Y KAM LP+E   FSEDLW
Sbjct: 1025 DIGDILWLHYKKAMTLPEEPLPFSEDLW 1052


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  548 bits (1413), Expect = e-153
 Identities = 280/507 (55%), Positives = 353/507 (69%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 1343
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 1342 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1163
              L R PT + P+  RARA+TSDVKN R G  L ++ + W      L +     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 1162 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 983
            HGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 982  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 803
            +PIVIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + P     
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940

Query: 802  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 623
            SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PGLH+LVPSL KK AF++ 
Sbjct: 941  SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000

Query: 622  GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 443
            GHKVSTYAGCQGITAPK+QILL  +T++C++EVLYTALSRAV SIHFVN++  + AFW+K
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKK 1060

Query: 442  LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFE 263
            LE TPYLK FLS +RE+                        ED     ++  E + +K E
Sbjct: 1061 LECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHE 1120

Query: 262  REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 83
            REIF+E HGH+NCVQ +DP  Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+  K+ 
Sbjct: 1121 REIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVISNPKANWQEYLEKRP 1180

Query: 82   LGDILWANYHKAMKLPKEQPEFSEDLW 2
            +G++L+ +Y +AM LPK    F EDLW
Sbjct: 1181 VGEVLFESYKRAMHLPKMPIPFEEDLW 1207


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  531 bits (1367), Expect = e-148
 Identities = 276/507 (54%), Positives = 342/507 (67%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 1343
            LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+L   
Sbjct: 701  LPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKMLDDQ 757

Query: 1342 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1163
                R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LAISVI
Sbjct: 758  A---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814

Query: 1162 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 983
            HGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A +   
Sbjct: 815  HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPT 874

Query: 982  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 803
             P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P T   
Sbjct: 875  KPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEA 934

Query: 802  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 623
             + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK AF++ 
Sbjct: 935  DKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEM 994

Query: 622  GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 443
            GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN +  + AFW K
Sbjct: 995  GHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCSPNNQAFWAK 1054

Query: 442  LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFE 263
            LE+TPYLK FLS +RED                      PV+      +D  E + +K E
Sbjct: 1055 LESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDILEQMPEKHE 1114

Query: 262  REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 83
            REIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL +S P+AN +EF  KK 
Sbjct: 1115 REIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVLSNPKANWQEFMEKKP 1174

Query: 82   LGDILWANYHKAMKLPKEQPEFSEDLW 2
            +GD+L+  Y +AM LP E   F   LW
Sbjct: 1175 IGDVLFGFYREAMGLPTEPIAFEPQLW 1201


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  530 bits (1366), Expect = e-148
 Identities = 276/507 (54%), Positives = 340/507 (67%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 1343
            LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+L   
Sbjct: 701  LPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLN-- 755

Query: 1342 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1163
             S  R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LAISVI
Sbjct: 756  -SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814

Query: 1162 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 983
            HGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A +   
Sbjct: 815  HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPT 874

Query: 982  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 803
             P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS HHE+NE A+ S + P T   
Sbjct: 875  KPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEA 934

Query: 802  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 623
             + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK AF++ 
Sbjct: 935  DKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQAFSEM 994

Query: 622  GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 443
            GHK STYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW K
Sbjct: 995  GHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAK 1054

Query: 442  LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFE 263
            LE+TPYLK FLS +RED                      PV+      +D  + + +K E
Sbjct: 1055 LESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHE 1114

Query: 262  REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 83
            REIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  KK 
Sbjct: 1115 REIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKKP 1174

Query: 82   LGDILWANYHKAMKLPKEQPEFSEDLW 2
            +GD+L+  Y +AM LP E   F   LW
Sbjct: 1175 IGDVLFGFYREAMGLPTEPIAFEPQLW 1201


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  529 bits (1362), Expect = e-147
 Identities = 275/507 (54%), Positives = 341/507 (67%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 1343
            LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+L   
Sbjct: 701  LPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKMLNDQ 757

Query: 1342 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1163
                R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LAISVI
Sbjct: 758  A---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814

Query: 1162 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 983
            HGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A +   
Sbjct: 815  HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPI 874

Query: 982  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 803
             P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS HHE+NE A+ S + P T   
Sbjct: 875  KPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPFTLEA 934

Query: 802  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 623
             + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK AF++ 
Sbjct: 935  DKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEM 994

Query: 622  GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 443
            GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW K
Sbjct: 995  GHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAK 1054

Query: 442  LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFE 263
            LE+TPYLK FLS +RED                      PV+      +D  + + +K E
Sbjct: 1055 LESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMPEKHE 1114

Query: 262  REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 83
            REIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  K+ 
Sbjct: 1115 REIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKRP 1174

Query: 82   LGDILWANYHKAMKLPKEQPEFSEDLW 2
            +GD+L+  Y +AM LP E   F   LW
Sbjct: 1175 IGDVLFGFYREAMGLPTEPIAFEPQLW 1201


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  528 bits (1361), Expect = e-147
 Identities = 267/510 (52%), Positives = 351/510 (68%), Gaps = 3/510 (0%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPK--ATLPEHWNEPGLSKVLT 1349
            LPW  WL  LN+L F+  +   D   G++I PI D + LPK    LPE         +L 
Sbjct: 840  LPWKLWLGVLNSLNFKGNQRILD-GNGQLIFPIKDNKSLPKYEGRLPE-------PHLLE 891

Query: 1348 TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAI 1172
             L+  +R+P  +  D  + RAF SDVKN+RTG    ++   WKE  T + ++     +A+
Sbjct: 892  QLKEASRYPCPYRIDHKQGRAFASDVKNNRTGSLTTKQPDEWKEAFTRMAESPEQRTVAL 951

Query: 1171 SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 992
            +VIHGAGGSGKSQ LQ  L +NP+  I  +LPTNELR DWL KLP  P    +TFERA +
Sbjct: 952  TVIHGAGGSGKSQLLQRYLMENPECKINTILPTNELRNDWLTKLPKMPLTAIQTFERALI 1011

Query: 991  CSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPAT 812
              + P+VIFDDY KLP GYI+AF   H ++E  ILTGDPRQST HE+NE+A+I+ L+ +T
Sbjct: 1012 SPQKPVVIFDDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTFHESNEQAMINHLSKST 1071

Query: 811  TIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAF 632
              FS+ SRYYINATHRN + LA  LGVYS  +    ++   +P+P  HLLVPSL+KK ++
Sbjct: 1072 EHFSQFSRYYINATHRNKQDLARFLGVYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSY 1131

Query: 631  TDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAF 452
            T+ G+K STYAGCQGITA +VQ+LLD DTT+C+ +VLYTALSRAV ++HF+N++A SSAF
Sbjct: 1132 TEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRAVHAVHFINTSATSSAF 1191

Query: 451  WEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSD 272
            W+KL +TPYLKTFLS +RED++ E                  PVE++  +L+D  E L +
Sbjct: 1192 WDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPVENENLSLEDKVEELLE 1251

Query: 271  KFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRA 92
            K ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI+ARL IS P+AN+EEFR 
Sbjct: 1252 KHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANMEEFRM 1311

Query: 91   KKDLGDILWANYHKAMKLPKEQPEFSEDLW 2
            KK++GD+LW NY +AMKLP +  EFS +LW
Sbjct: 1312 KKNVGDVLWLNYKRAMKLPDKPIEFSHELW 1341


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  528 bits (1359), Expect = e-147
 Identities = 274/507 (54%), Positives = 341/507 (67%)
 Frame = -2

Query: 1522 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 1343
            LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+L   
Sbjct: 701  LPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKMLDNQ 757

Query: 1342 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1163
                R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LAISVI
Sbjct: 758  A---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAISVI 814

Query: 1162 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 983
            HGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A +   
Sbjct: 815  HGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALLAPT 874

Query: 982  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 803
             P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P T   
Sbjct: 875  KPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPFTLEA 934

Query: 802  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 623
             + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK AF++ 
Sbjct: 935  DKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEAFSEM 994

Query: 622  GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 443
            GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + AFW K
Sbjct: 995  GHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQAFWAK 1054

Query: 442  LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFE 263
            LE+TPYLK FLS +RED                      PV+      +D  + + +K E
Sbjct: 1055 LESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMREKHE 1114

Query: 262  REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 83
            REIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF  K+ 
Sbjct: 1115 REIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFMEKRP 1174

Query: 82   LGDILWANYHKAMKLPKEQPEFSEDLW 2
            +GD+L+  Y +AM LP E   F   LW
Sbjct: 1175 IGDVLFGFYREAMGLPTEPIAFEPQLW 1201