BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00000033
         (1149 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 590   e-166
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   553   e-155
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   550   e-154
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   549   e-154
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   548   e-153
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   548   e-153
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   548   e-153
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   548   e-153
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   546   e-153
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   487   e-135
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   414   e-113
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   282   2e-73
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   278   3e-72
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   260   8e-67
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 259   1e-66
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   259   1e-66
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 258   3e-66
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               257   7e-66
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   256   1e-65
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   247   6e-63

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  590 bits (1520), Expect = e-166
 Identities = 286/338 (84%), Positives = 304/338 (89%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLT+GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPE
Sbjct: 224  WLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPE 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            F ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNTRLRGPPGF +PFT+P PVNPDDA+T  +FREF           + + LE S E
Sbjct: 404  PVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTE 463

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
            +  +HTSLKV    LS EQL ALHELGN+R GGP+LPK
Sbjct: 464  SDVTHTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPK 501


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  553 bits (1425), Expect = e-155
 Identities = 273/338 (80%), Positives = 290/338 (85%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP 
Sbjct: 224  WLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F              +LE  AE
Sbjct: 404  PVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL +    L   QL ALHELGNTR GGPLLPK
Sbjct: 459  TPDEHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPK 496


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  550 bits (1417), Expect = e-154
 Identities = 271/338 (80%), Positives = 291/338 (86%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLTA    T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP 
Sbjct: 224  WLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRGPPGF +PFT+P PVNPDDA+T  +F+ F           +  +LE  AE
Sbjct: 404  PVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAF-----CQAAAAVETTLEQQAE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL++    LS  QL ALH+LGN R GGPLLP+
Sbjct: 459  TPDEHQSLRLDCPTLSEHQLWALHKLGNARCGGPLLPQ 496


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  549 bits (1414), Expect = e-154
 Identities = 270/338 (79%), Positives = 289/338 (85%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP 
Sbjct: 224  WLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E
Sbjct: 404  PVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEXTLAQQSE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL +  + L   QL ALHELGN R GGPLLPK
Sbjct: 459  TPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  548 bits (1413), Expect = e-153
 Identities = 270/338 (79%), Positives = 289/338 (85%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP 
Sbjct: 224  WLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E
Sbjct: 404  PVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL +  + L   QL ALHELGN R GGPLLPK
Sbjct: 459  TPDEHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  548 bits (1411), Expect = e-153
 Identities = 270/338 (79%), Positives = 288/338 (85%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP 
Sbjct: 224  WLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E
Sbjct: 404  PVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL +    L   QL ALHELGN R GGPLLPK
Sbjct: 459  TPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  548 bits (1411), Expect = e-153
 Identities = 270/338 (79%), Positives = 288/338 (85%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP 
Sbjct: 224  WLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E
Sbjct: 404  PVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL +    L   QL ALHELGN R GGPLLPK
Sbjct: 459  TPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  548 bits (1411), Expect = e-153
 Identities = 270/338 (79%), Positives = 288/338 (85%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP 
Sbjct: 224  WLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E
Sbjct: 404  PVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL +    L   QL ALHELGN R GGPLLPK
Sbjct: 459  TPDEHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK 496


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  546 bits (1407), Expect = e-153
 Identities = 269/338 (79%), Positives = 288/338 (85%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLE
Sbjct: 164  AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLE 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLT   Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP 
Sbjct: 224  WLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPA 283

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
            +YNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE
Sbjct: 284  KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 343

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEF
Sbjct: 344  FTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEF 403

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR VNT LRG PGF +PF +P PVNPDDA+T ++F+ F           +  +L   +E
Sbjct: 404  PVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSE 458

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK 1016
                H SL +  + L   QL ALHELGN R G PLLPK
Sbjct: 459  TPDEHQSLSLKCSTLPEHQLWALHELGNARCGAPLLPK 496


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  487 bits (1253), Expect = e-135
 Identities = 252/382 (65%), Positives = 280/382 (73%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            AHSP+LQTLYATLVLPPE     RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE
Sbjct: 164  AHSPRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 222

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLTVGHLTA   PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE
Sbjct: 223  WLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPE 282

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
             YNCRTPISKT MMQMFFYIKS KEA+      + +QLISTKELQHYQPSEITLLVNYFE
Sbjct: 283  NYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFE 342

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            FTA+LDSHTCFEDV    L  +        I R+LQFFRGRPSFVKLIKALDWQPITLEF
Sbjct: 343  FTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEF 401

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
            PVR V T +RGPPGF NPFT+P PVNP+DAD    F++F           +   LE SAE
Sbjct: 402  PVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAE 461

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTK 1082
            +   HT LKV  + LS  QL A+H LG++R GGPLLP++T +    E           ++
Sbjct: 462  SPDHHTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQ 521

Query: 1083 ASAALNQGDHTDQAPVNSDPAT 1148
            AS A +     D  P   +P T
Sbjct: 522  ASPASSNPSGPDAQPTAQNPET 543


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  414 bits (1065), Expect = e-113
 Identities = 212/337 (62%), Positives = 248/337 (73%)
 Frame = +3

Query: 3    AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
            A SPKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+
Sbjct: 164  ARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQ 223

Query: 183  WLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 362
            WLT G+L + +  T+TAQRLETKGANHLFIFQRG YLTPERRTFTT   YVTVP+IFLP 
Sbjct: 224  WLTAGYLISEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPS 282

Query: 363  RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 542
              N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+
Sbjct: 283  SANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFD 342

Query: 543  FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 722
            F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P   KLIKAL WQP+ LEF
Sbjct: 343  FVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEF 402

Query: 723  PVRTVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXXIADSLEGSAE 902
             V TV    R PPGF +P  +P PVN  DA T  A                         
Sbjct: 403  KVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA------------------------- 437

Query: 903  NLASHTSLKVGHADLSTEQLRALHELGNTRLGGPLLP 1013
               ++ SL +   +LS +QL ALH LG+ R  G  LP
Sbjct: 438  --CANQSLPLD--NLSEDQLEALHVLGSLRTDGESLP 470


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  282 bits (722), Expect = 2e-73
 Identities = 140/252 (55%), Positives = 181/252 (71%), Gaps = 6/252 (2%)
 Frame = +3

Query: 9   SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 188
           SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+
Sbjct: 168 SPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWI 227

Query: 189 TVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 356
            VG    A++      +T+Q LETKGANHLFIFQRG +LTPE R F+T   YVT+P IFL
Sbjct: 228 KVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFL 287

Query: 357 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 536
           P+++N R PI KT   Q+F Y+KSVK   ERDIWAK RQL+ T ELQ Y P E+TLLVNY
Sbjct: 288 PKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNY 347

Query: 537 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPI 710
           F   A L S TCF++VLSG + ++L +P  +  +IQ+   F  G   F +L++AL+W  +
Sbjct: 348 FLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDV 405

Query: 711 TLEFPVRTVNTR 746
           TL +P +T + R
Sbjct: 406 TLTYPTKTFDNR 417


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  278 bits (711), Expect = 3e-72
 Identities = 136/257 (52%), Positives = 175/257 (68%), Gaps = 12/257 (4%)
 Frame = +3

Query: 3   AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLE 182
           A SPKL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL 
Sbjct: 164 ARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLG 223

Query: 183 WLTVGHLT--AANQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTE 326
           WL VG +     N P           +TAQR+ETKGANHLF+FQRG   TP+ R+  T  
Sbjct: 224 WLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNT 283

Query: 327 HYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQ 506
            Y+TVP +FLP+++N R P+ KTI  QMF YIKSVK+  ERDI++K RQLI T ELQ Y 
Sbjct: 284 QYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYS 343

Query: 507 PSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLI 686
           P E+ LL NYF   + L S    E+VL+G+L ++L RP++S +   +    G+P F +L+
Sbjct: 344 PDELVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLL 403

Query: 687 KALDWQPITLEFPVRTV 737
           +AL W  + L  PVR V
Sbjct: 404 EALLWTNVDLILPVRYV 420


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
           [Allium virus X]
          Length = 1701

 Score =  260 bits (664), Expect = 8e-67
 Identities = 130/242 (53%), Positives = 167/242 (69%), Gaps = 1/242 (0%)
 Frame = +3

Query: 18  LQTLYATLVLPPEALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTV 194
           LQTL AT+VLP EA YR+ SL+P +YTL+Y  E  F+Y PGGH GA Y H + QL+WL V
Sbjct: 167 LQTLVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRV 226

Query: 195 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNC 374
           G +   NQ  ITAQR+E+K ANHLF+FQRGN  TP  R F T + YVT+P IFLP+++N 
Sbjct: 227 GRVRYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNT 285

Query: 375 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 554
           R PI KT++MQ+F Y+K V +  ERDI+AK RQLI T +LQ +  SE+  +VNYF F A 
Sbjct: 286 RVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAK 345

Query: 555 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 734
            DS TCF D+LSG+L ++L +PL + +     F  G P F KL+KAL WQ IT+   V  
Sbjct: 346 QDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVAD 405

Query: 735 VN 740
           +N
Sbjct: 406 IN 407


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  259 bits (662), Expect = 1e-66
 Identities = 125/246 (50%), Positives = 170/246 (69%), Gaps = 4/246 (1%)
 Frame = +3

Query: 9   SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 188
           S KLQTLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL
Sbjct: 168 SQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWL 227

Query: 189 TVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 356
            VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFL
Sbjct: 228 KVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFL 287

Query: 357 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 536
           P++YN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY
Sbjct: 288 PKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNY 347

Query: 537 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 716
           +   + LDS TCF++VL+G ++++L +P+ +          G+  F +L++AL+W  ++L
Sbjct: 348 YLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSL 407

Query: 717 EFPVRT 734
            + V T
Sbjct: 408 SYKVET 413


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  259 bits (662), Expect = 1e-66
 Identities = 125/246 (50%), Positives = 170/246 (69%), Gaps = 4/246 (1%)
 Frame = +3

Query: 9   SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 188
           S KLQTLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL
Sbjct: 168 SQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWL 227

Query: 189 TVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 356
            VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFL
Sbjct: 228 KVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFL 287

Query: 357 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 536
           P++YN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY
Sbjct: 288 PKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNY 347

Query: 537 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 716
           +   + LDS TCF++VL+G ++++L +P+ +          G+  F +L++AL+W  ++L
Sbjct: 348 YLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSL 407

Query: 717 EFPVRT 734
            + V T
Sbjct: 408 SYKVET 413


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  258 bits (659), Expect = 3e-66
 Identities = 125/246 (50%), Positives = 169/246 (68%), Gaps = 4/246 (1%)
 Frame = +3

Query: 9   SPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWL 188
           S KLQTLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+WL
Sbjct: 168 SQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWL 227

Query: 189 TVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 356
            VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IFL
Sbjct: 228 KVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFL 287

Query: 357 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 536
           P++YN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VNY
Sbjct: 288 PKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNY 347

Query: 537 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 716
           +   + LDS TCF++VL+G  +++L +P+ +          G+  F +L++AL+W  ++L
Sbjct: 348 YLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEALEWVDVSL 407

Query: 717 EFPVRT 734
            + V T
Sbjct: 408 SYKVET 413


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  257 bits (656), Expect = 7e-66
 Identities = 132/272 (48%), Positives = 177/272 (65%), Gaps = 10/272 (3%)
 Frame = +3

Query: 3   AHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYF 161
           A +PK+QT+ AT+VLP EALY L SLYP +Y+L+Y +         F Y PGGH GA Y 
Sbjct: 164 ARNPKIQTVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYV 223

Query: 162 HKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTV 341
           H+  Q++WL  GH+    +  ITAQ+LETK ANHLFI++RG Y TPE R F T   YVT+
Sbjct: 224 HELKQIDWLRFGHIIDG-KVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTL 282

Query: 342 PDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEIT 521
           P IFLP ++N R PI KT++MQ+F Y+K+V  AKERDIWAK RQLI T++LQ Y P+EI 
Sbjct: 283 PKIFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIV 342

Query: 522 LLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDW 701
            LVNYF F A   + T F+ +L G++I+++ RP+ +  +   Q   G   F +L++AL W
Sbjct: 343 HLVNYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSW 402

Query: 702 QPITLE---FPVRTVNTRLRGPPGFHNPFTKP 788
             I L     PV+T + R  G    ++PFT P
Sbjct: 403 DEIDLTLDVLPVKTHDWRRMGVADSNDPFTYP 434


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
           replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  256 bits (654), Expect = 1e-65
 Identities = 124/247 (50%), Positives = 169/247 (68%), Gaps = 4/247 (1%)
 Frame = +3

Query: 6   HSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEW 185
           +S KL TLYAT+VLPPEA++R+ S++P IY L + E  F+Y PGGHAGASY H+Y QL+W
Sbjct: 167 NSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQW 226

Query: 186 LTVGHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 353
           L VG     ++      +T+Q LETKGANHLF+FQRGN+ TP  RTF     +VT+P IF
Sbjct: 227 LKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIF 286

Query: 354 LPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 533
           LP++YN R PI KT+  Q+F YIKSVK   ERDIWAK RQ+I T ELQ Y   E+ L+VN
Sbjct: 287 LPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVN 346

Query: 534 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPIT 713
           Y+   + LDS TCF++VL+G  +++L +P+ +          G+  F +L++AL+W  ++
Sbjct: 347 YYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVS 406

Query: 714 LEFPVRT 734
           L + V T
Sbjct: 407 LSYRVET 413


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
           replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  247 bits (631), Expect = 6e-63
 Identities = 127/273 (46%), Positives = 172/273 (63%), Gaps = 6/273 (2%)
 Frame = +3

Query: 15  KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYDQ 176
           +L+TL AT+VLP EA + L S+YP IYTL Y          F Y PGGH GA Y H+  Q
Sbjct: 168 QLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELKQ 227

Query: 177 LEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 356
           L+WL+VG LT     TITAQ++ETK ANHLFIFQRG+ +TP  R F+T   +VT+P IFL
Sbjct: 228 LDWLSVGRLTDG-VTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFL 286

Query: 357 PERYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 536
           PE++N R PI KT++MQMF Y+K VK+  ERDIWAK+RQLI T++LQ +   E+  L NY
Sbjct: 287 PEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNY 346

Query: 537 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 716
           F F     S  CF+DVL G  + R  +P+++  + V Q   G   FV+L++AL+W  + L
Sbjct: 347 FVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVDL 406

Query: 717 EFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDAD 815
           +   +  + + R   GF +         PDD++
Sbjct: 407 KLDTKNYDFKRREGNGFLS--LSKVAAGPDDSE 437