BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00031436
         (375 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_227375.1| large coat protein [Strawberry latent ringspot ...   172   3e-41
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...   172   3e-41
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...   172   5e-41
gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]         170   2e-40
gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]         169   3e-40
gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]         169   3e-40
gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]         169   3e-40
gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]         169   3e-40

>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
          Length = 388

 Score =  172 bits (437), Expect = 3e-41
 Identities = 86/124 (69%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 196 SFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 255

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA D+    E DAYR FGS+VVDLRAHR+LRARVPL GYGGY
Sbjct: 256 LEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRLLRARVPLHGYGGY 315

Query: 13  LAGG 2
           L GG
Sbjct: 316 LMGG 319


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
           gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
           [Strawberry latent ringspot virus]
          Length = 989

 Score =  172 bits (437), Expect = 3e-41
 Identities = 86/124 (69%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 562 SFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 621

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA D+    E DAYR FGS+VVDLRAHR+LRARVPL GYGGY
Sbjct: 622 LEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRLLRARVPLHGYGGY 681

Query: 13  LAGG 2
           L GG
Sbjct: 682 LMGG 685


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score =  172 bits (435), Expect = 5e-41
 Identities = 85/124 (68%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 439 SFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 498

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA D+    E DAYR FGS+VVDLRAHR+LRA+VPL GYGGY
Sbjct: 499 LEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLHGYGGY 558

Query: 13  LAGG 2
           L GG
Sbjct: 559 LMGG 562


>gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  170 bits (431), Expect = 2e-40
 Identities = 84/124 (67%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 285 SFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 344

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VPL GYGGY
Sbjct: 345 LEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGY 404

Query: 13  LAGG 2
           L GG
Sbjct: 405 LMGG 408


>gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  169 bits (429), Expect = 3e-40
 Identities = 84/124 (67%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 285 SFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 344

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VPL GYGGY
Sbjct: 345 LEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGY 404

Query: 13  LAGG 2
           L GG
Sbjct: 405 LMGG 408


>gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  169 bits (429), Expect = 3e-40
 Identities = 84/124 (67%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 285 SFLPLRQVVVDFDLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 344

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VPL GYGGY
Sbjct: 345 LEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGY 404

Query: 13  LAGG 2
           L GG
Sbjct: 405 LMGG 408


>gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  169 bits (429), Expect = 3e-40
 Identities = 84/124 (67%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 285 SFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 344

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VPL GYGGY
Sbjct: 345 LEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGY 404

Query: 13  LAGG 2
           L GG
Sbjct: 405 LMGG 408


>gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  169 bits (429), Expect = 3e-40
 Identities = 84/124 (67%), Positives = 95/124 (76%)
 Frame = -3

Query: 373 TFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLS 194
           +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL 
Sbjct: 285 SFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLV 344

Query: 193 LEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPLSGYGGY 14
           LEV+FNLPAM GG  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VPL GYGGY
Sbjct: 345 LEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGY 404

Query: 13  LAGG 2
           L GG
Sbjct: 405 LMGG 408