BLASTX nr result
ID: Ephedra27_contig00031413
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00031413
(392 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002519978.1| ATP-dependent Clp protease proteolytic subun... 100 3e-19
ref|YP_002559317.1| ribosomal protein S12 (chloroplast) [Ephedra... 82 1e-13
ref|YP_002519977.1| ribosomal protein S12 (chloroplast) [Ephedra... 82 1e-13
dbj|BAH11205.1| ribosomal protein S12 (chloroplast) [Welwitschia... 64 2e-08
ref|YP_001876559.1| ribosomal protein S12 [Welwitschia mirabilis... 62 6e-08
dbj|BAN16907.1| ATP-dependent Clp protease proteolytic subunit (... 60 2e-07
gb|AGZ19238.1| ribosomal protein S12 (chloroplast) [Oryza rufipo... 60 4e-07
ref|YP_008815729.1| ribosomal protein S12 [Setaria italica] gi|5... 60 4e-07
ref|XP_004516896.1| PREDICTED: 30S ribosomal protein S12, chloro... 60 4e-07
ref|YP_001152101.1| ORF46d [Pinus koraiensis] gi|145048728|gb|AB... 60 4e-07
ref|YP_008592664.1| ribosomal protein S12 (chloroplast) [Berberi... 59 5e-07
ref|YP_008474414.1| ribosomal protein S12 (chloroplast) [Aegilop... 59 9e-07
gb|AGP51306.1| ribosomal protein S12 (chloroplast) [Triticum aes... 59 9e-07
ref|YP_008239228.1| ribosomal protein S12 (chloroplast) [Triticu... 59 9e-07
ref|YP_008239151.1| ribosomal protein S12 (chloroplast) [Secale ... 59 9e-07
ref|YP_008239072.1| ribosomal protein S12 (chloroplast) [Triticu... 59 9e-07
ref|YP_008816226.1| ribosomal protein S12 (chloroplast) [Glycine... 58 1e-06
ref|YP_008815228.1| ribosomal protein S12 (chloroplast) [Kalopan... 58 1e-06
ref|YP_008815183.1| ribosomal protein S12 (chloroplast) [Kalopan... 58 1e-06
ref|YP_008815054.1| ribosomal protein S12 (chloroplast) [Metapan... 58 1e-06
>ref|YP_002519978.1| ATP-dependent Clp protease proteolytic subunit (chloroplast)
[Ephedra equisetina] gi|220983579|dbj|BAH11346.1|
ATP-dependent Clp protease proteolytic subunit
(chloroplast) [Ephedra equisetina]
Length = 221
Score = 100 bits (248), Expect = 3e-19
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = -3
Query: 390 WEPNKEEPPFEIPEEGNEGFGLIPNHVLEEARRARKIRSTKGAVQD 253
WEPNKEEPPFEIPEEGNEGFGLIPNHVLEEARRARKIRSTKGAVQD
Sbjct: 176 WEPNKEEPPFEIPEEGNEGFGLIPNHVLEEARRARKIRSTKGAVQD 221
>ref|YP_002559317.1| ribosomal protein S12 (chloroplast) [Ephedra equisetina]
Length = 125
Score = 81.6 bits (200), Expect = 1e-13
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 32 IHPSTNSSALRTFLKSTRTAYLFFWLSRNSNKLRKCGH 145
+HPSTNSSALRTFLKSTRTAYLFFWLSRNSNKLRKCGH
Sbjct: 1 MHPSTNSSALRTFLKSTRTAYLFFWLSRNSNKLRKCGH 38
>ref|YP_002519977.1| ribosomal protein S12 (chloroplast) [Ephedra equisetina]
gi|220983578|dbj|BAH11345.1| ribosomal protein S12
(chloroplast) [Ephedra equisetina]
Length = 124
Score = 81.6 bits (200), Expect = 1e-13
Identities = 38/39 (97%), Positives = 39/39 (100%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYV 29
MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVY+
Sbjct: 1 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYI 39
>dbj|BAH11205.1| ribosomal protein S12 (chloroplast) [Welwitschia mirabilis]
Length = 125
Score = 63.9 bits (154), Expect = 2e-08
Identities = 31/39 (79%), Positives = 32/39 (82%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYV 29
MPT PQLIR ARQ KKK SR LQ+CPQRRGVCARVYV
Sbjct: 1 MPTNPQLIRDARQQKKKKRGSRGLQRCPQRRGVCARVYV 39
>ref|YP_001876559.1| ribosomal protein S12 [Welwitschia mirabilis]
gi|187763152|ref|YP_001876600.1| ribosomal protein S12
[Welwitschia mirabilis] gi|163311655|gb|ABY26813.1|
ribosomal protein S12 [Welwitschia mirabilis]
gi|163311682|gb|ABY26840.1| ribosomal protein S12
[Welwitschia mirabilis]
Length = 130
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVY 32
MPT PQLIR ARQ KKK SR LQ+CPQRRGVCARVY
Sbjct: 1 MPTNPQLIRDARQQKKKKRGSRGLQRCPQRRGVCARVY 38
>dbj|BAN16907.1| ATP-dependent Clp protease proteolytic subunit (chloroplast)
[Gnetum ula]
Length = 264
Score = 60.5 bits (145), Expect = 2e-07
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = -3
Query: 390 WEPNKEEPPFEIPEEGNEGFGLIPNHVLEEARRARKIR 277
W PNKE+PPFEIPEEGNEGF L P VLE R +R+IR
Sbjct: 176 WAPNKEDPPFEIPEEGNEGFELAPPMVLEAGRISRRIR 213
>gb|AGZ19238.1| ribosomal protein S12 (chloroplast) [Oryza rufipogon]
Length = 49
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + S AL+ CPQRRG CARVYVRLV
Sbjct: 1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVYVRLV 42
>ref|YP_008815729.1| ribosomal protein S12 [Setaria italica]
gi|558603732|ref|YP_008815774.1| ribosomal protein S12
[Setaria italica] gi|555298066|gb|AGZ13168.1| ribosomal
protein S12 [Setaria italica]
gi|555298104|gb|AGZ13206.1| ribosomal protein S12
[Setaria italica]
Length = 123
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + S AL+ CPQRRG CARVYVRLV
Sbjct: 1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVYVRLV 42
>ref|XP_004516896.1| PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Cicer
arietinum] gi|502181875|ref|XP_004516900.1| PREDICTED:
30S ribosomal protein S12, chloroplastic-like [Cicer
arietinum]
Length = 42
Score = 59.7 bits (143), Expect = 4e-07
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + V S AL+ CPQRRG C RVYVRLV
Sbjct: 1 MPTIKQLIRNARQPIRNVTKSPALRGCPQRRGTCTRVYVRLV 42
>ref|YP_001152101.1| ORF46d [Pinus koraiensis] gi|145048728|gb|ABP35347.1| ORF46d [Pinus
koraiensis]
Length = 46
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + S AL+ CPQRRGVCARVYVRLV
Sbjct: 1 MPTIQQLIRNARQPIENRKKSPALRGCPQRRGVCARVYVRLV 42
>ref|YP_008592664.1| ribosomal protein S12 (chloroplast) [Berberis bealei]
gi|536462705|gb|AGU37070.1| ribosomal protein S12
(chloroplast) [Berberis bealei]
Length = 46
Score = 59.3 bits (142), Expect = 5e-07
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR RQP K V S AL+ CPQRRG C RVYVRLV
Sbjct: 1 MPTIKQLIRNTRQPIKNVTKSPALRGCPQRRGTCTRVYVRLV 42
>ref|YP_008474414.1| ribosomal protein S12 (chloroplast) [Aegilops speltoides]
gi|568245019|ref|YP_008963927.1| ribosomal protein S12
(chloroplast) [Aegilops geniculata]
gi|568247017|ref|YP_008963850.1| ribosomal protein S12
(chloroplast) [Aegilops cylindrica]
gi|394986515|gb|AFN42396.1| ribosomal protein S12
(chloroplast) [Aegilops speltoides]
gi|554515577|gb|AGY92880.1| ribosomal protein S12
(chloroplast) [Aegilops cylindrica]
gi|554515655|gb|AGY92957.1| ribosomal protein S12
(chloroplast) [Aegilops geniculata]
Length = 53
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + + AL+ CPQRRG CARVYVRLV
Sbjct: 1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVYVRLV 42
>gb|AGP51306.1| ribosomal protein S12 (chloroplast) [Triticum aestivum]
Length = 133
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + + AL+ CPQRRG CARVYVRLV
Sbjct: 1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVYVRLV 42
>ref|YP_008239228.1| ribosomal protein S12 (chloroplast) [Triticum urartu]
gi|521301453|gb|AGP51250.1| ribosomal protein S12
(chloroplast) [Triticum urartu]
Length = 123
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + + AL+ CPQRRG CARVYVRLV
Sbjct: 1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVYVRLV 42
>ref|YP_008239151.1| ribosomal protein S12 (chloroplast) [Secale cereale]
gi|521301292|gb|AGP51091.1| ribosomal protein S12
(chloroplast) [Secale cereale]
Length = 131
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + + AL+ CPQRRG CARVYVRLV
Sbjct: 1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVYVRLV 42
>ref|YP_008239072.1| ribosomal protein S12 (chloroplast) [Triticum monococcum]
gi|533310128|ref|YP_008474279.1| ribosomal protein S12
(chloroplast) [Aegilops tauschii]
gi|384406875|gb|AFH89532.1| ribosomal protein S12
(chloroplast) [Aegilops tauschii]
gi|521300975|gb|AGP50778.1| ribosomal protein S12
(chloroplast) [Hordeum vulgare subsp. vulgare]
gi|521301168|gb|AGP50969.1| ribosomal protein S12
(chloroplast) [Hordeum vulgare subsp. spontaneum]
gi|521301213|gb|AGP51013.1| ribosomal protein S12
(chloroplast) [Triticum monococcum]
Length = 132
Score = 58.5 bits (140), Expect = 9e-07
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR ARQP + + AL+ CPQRRG CARVYVRLV
Sbjct: 1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVYVRLV 42
>ref|YP_008816226.1| ribosomal protein S12 (chloroplast) [Glycine soja]
gi|558604199|ref|YP_008816270.1| ribosomal protein S12
(chloroplast) [Glycine soja] gi|557469752|gb|AHA04005.1|
ribosomal protein S12 (chloroplast) [Glycine soja]
gi|557469791|gb|AHA04044.1| ribosomal protein S12
(chloroplast) [Glycine soja]
Length = 127
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR RQP + V S AL+ CPQRRG C RVYVRLV
Sbjct: 1 MPTMKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLV 42
>ref|YP_008815228.1| ribosomal protein S12 (chloroplast) [Kalopanax septemlobus]
gi|458599672|gb|AGG39364.1| ribosomal protein S12
(chloroplast) [Kalopanax septemlobus]
Length = 142
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR RQP + V S AL+ CPQRRG C RVYVRLV
Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLV 42
>ref|YP_008815183.1| ribosomal protein S12 (chloroplast) [Kalopanax septemlobus]
gi|458599659|gb|AGG39351.1| ribosomal protein S12
(chloroplast) [Kalopanax septemlobus]
Length = 143
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR RQP + V S AL+ CPQRRG C RVYVRLV
Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLV 42
>ref|YP_008815054.1| ribosomal protein S12 (chloroplast) [Metapanax delavayi]
gi|458599431|gb|AGG39190.1| ribosomal protein S12
(chloroplast) [Metapanax delavayi]
Length = 161
Score = 58.2 bits (139), Expect = 1e-06
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = -2
Query: 145 MPTLPQLIRIARQPKKKVGSSRALQKCPQRRGVCARVYVRLV 20
MPT+ QLIR RQP + V S AL+ CPQRRG C RVYVRLV
Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYVRLV 42