BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00031407
         (413 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogy...   258   4e-67
gb|AAS86818.1| RNA polymerase II second largest subunit, partial...   258   8e-67
gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalo...   257   1e-66
gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydi...   257   1e-66
gb|AAW22914.1| RNA polymerase II second largest subunit [Cunning...   257   1e-66
gb|AAY85196.1| RNA polymerase II second largest subunit [Chimona...   257   1e-66
gb|AAS86819.1| RNA polymerase II second largest subunit, partial...   257   1e-66
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su...   257   1e-66
gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphae...   257   1e-66
gb|AAB94061.1| RPB140 [Magnolia virginiana]                           257   1e-66
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis...   257   1e-66
gb|AFV74907.1| RNA polymerase II second largest subunit, partial...   257   1e-66
ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [S...   257   1e-66
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...   257   1e-66
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   257   1e-66
gb|AAW22893.1| RNA polymerase II second largest subunit [Dryopte...   257   1e-66
gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum ...   257   1e-66
gb|AAW22891.1| RNA polymerase II second largest subunit [Cryptog...   257   1e-66
gb|AAW22883.1| RNA polymerase II second largest subunit [Botrych...   257   1e-66
gb|AAW22895.1| RNA polymerase II second largest subunit [Polysti...   257   1e-66

>gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score =  258 bits (660), Expect = 4e-67
 Identities = 120/134 (89%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           ETAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 177 ETAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 236

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL Y+L+YPQKPLV TRAMEHLHFRELPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 237 TLAYILYYPQKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 296

Query: 53  FRSLYYRSYREEEK 12
            RS++YRSYR+EEK
Sbjct: 297 HRSIFYRSYRDEEK 310


>gb|AAS86818.1| RNA polymerase II second largest subunit, partial [Gnetum gnemon]
          Length = 546

 Score =  258 bits (658), Expect = 8e-67
 Identities = 120/132 (90%), Positives = 129/132 (97%)
 Frame = -1

Query: 407 AYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMDTL 228
           AY+NTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMDTL
Sbjct: 179 AYSNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 238

Query: 227 GYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGFFR 48
            YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGFFR
Sbjct: 239 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 298

Query: 47  SLYYRSYREEEK 12
           SL++RSYR+EEK
Sbjct: 299 SLFFRSYRDEEK 310


>gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalotaxus fortunei]
          Length = 533

 Score =  257 bits (657), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 163 EDAYSHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 222

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 223 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 282

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 283 FRSLFFRSYRDEEK 296


>gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydium cupressinum]
          Length = 498

 Score =  257 bits (657), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 139 EDAYSHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 198

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 199 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 258

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 259 FRSLFFRSYRDEEK 272


>gb|AAW22914.1| RNA polymerase II second largest subunit [Cunninghamia lanceolata]
          Length = 550

 Score =  257 bits (657), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 161 EDAYSHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 220

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 221 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 280

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 281 FRSLFFRSYRDEEK 294


>gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
          Length = 906

 Score =  257 bits (657), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 588 EEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 647

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 648 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 707

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 708 FRSLFFRSYRDEEK 721


>gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
           sansibarensis]
          Length = 572

 Score =  257 bits (657), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 176 EEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 235

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 236 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 295

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 296 FRSLFFRSYRDEEK 309


>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
            brachyantha]
          Length = 1184

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413  ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
            E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 688  EEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 747

Query: 233  TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
            TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 748  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 807

Query: 53   FRSLYYRSYREEEK 12
            FRSL++RSYR+EEK
Sbjct: 808  FRSLFFRSYRDEEK 821


>gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 184 EEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 243

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 244 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 303

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 304 FRSLFFRSYRDEEK 317


>gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 184 EEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 243

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 244 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 303

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 304 FRSLFFRSYRDEEK 317


>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 180 EEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 239

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 240 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 299

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 300 FRSLFFRSYRDEEK 313


>gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
          Length = 568

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 128/134 (95%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AYT TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQ RMD
Sbjct: 172 EEAYTETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 231

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 232 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 291

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 292 FRSLFFRSYRDEEK 305


>ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
            gi|241920604|gb|EER93748.1| hypothetical protein
            SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413  ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
            E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 722  EDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 781

Query: 233  TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
            TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 782  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 841

Query: 53   FRSLYYRSYREEEK 12
            FRSL++RSYR+EEK
Sbjct: 842  FRSLFFRSYRDEEK 855


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413  ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
            E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 722  EEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 781

Query: 233  TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
            TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 782  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 841

Query: 53   FRSLYYRSYREEEK 12
            FRSL++RSYR+EEK
Sbjct: 842  FRSLFFRSYRDEEK 855


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413  ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
            E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 695  EEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 754

Query: 233  TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
            TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 755  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 814

Query: 53   FRSLYYRSYREEEK 12
            FRSL++RSYR+EEK
Sbjct: 815  FRSLFFRSYRDEEK 828


>gb|AAW22893.1| RNA polymerase II second largest subunit [Dryopteris filix-mas]
          Length = 459

 Score =  257 bits (656), Expect = 1e-66
 Identities = 118/134 (88%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 165 EEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 224

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINA+VAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 225 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGF 284

Query: 53  FRSLYYRSYREEEK 12
           FRS++YRSYR+EEK
Sbjct: 285 FRSIFYRSYRDEEK 298


>gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
          Length = 565

 Score =  257 bits (656), Expect = 1e-66
 Identities = 120/134 (89%), Positives = 129/134 (96%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 176 EEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 235

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINAIVAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 236 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 295

Query: 53  FRSLYYRSYREEEK 12
           FRSL++RSYR+EEK
Sbjct: 296 FRSLFFRSYRDEEK 309


>gb|AAW22891.1| RNA polymerase II second largest subunit [Cryptogramma crispa]
          Length = 537

 Score =  257 bits (656), Expect = 1e-66
 Identities = 118/134 (88%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 175 EEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 234

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINA+VAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 235 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGF 294

Query: 53  FRSLYYRSYREEEK 12
           FRS++YRSYR+EEK
Sbjct: 295 FRSIFYRSYRDEEK 308


>gb|AAW22883.1| RNA polymerase II second largest subunit [Botrychium virginianum]
          Length = 488

 Score =  257 bits (656), Expect = 1e-66
 Identities = 118/134 (88%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 127 EEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 186

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINA+VAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 187 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGF 246

Query: 53  FRSLYYRSYREEEK 12
           FRS++YRSYR+EEK
Sbjct: 247 FRSIFYRSYRDEEK 260


>gb|AAW22895.1| RNA polymerase II second largest subunit [Polystichum lonchitis]
          Length = 527

 Score =  257 bits (656), Expect = 1e-66
 Identities = 118/134 (88%), Positives = 130/134 (97%)
 Frame = -1

Query: 413 ETAYTNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNYQLRMD 234
           E AY++TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQLRMD
Sbjct: 175 EEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 234

Query: 233 TLGYVLFYPQKPLVATRAMEHLHFRELPAGINAIVAIACYSGYNQEDSLIMNQSAIDRGF 54
           TL YVL+YPQKPLV TRAMEHLHFR+LPAGINA+VAIACYSGYNQEDS+IMNQS+IDRGF
Sbjct: 235 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGF 294

Query: 53  FRSLYYRSYREEEK 12
           FRS++YRSYR+EEK
Sbjct: 295 FRSIFYRSYRDEEK 308