BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00031364
         (631 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006404547.1| hypothetical protein EUTSA_v10000418mg [Eutr...   119   6e-25
ref|XP_006296137.1| hypothetical protein CARUB_v10025289mg [Caps...   116   5e-24
ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...   115   1e-23
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...   114   2e-23
gb|ESW03682.1| hypothetical protein PHAVU_011G033500g [Phaseolus...   113   4e-23
ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis tha...   113   4e-23
ref|XP_002892433.1| pentatricopeptide repeat-containing protein ...   113   4e-23
ref|XP_006303707.1| hypothetical protein CARUB_v10011813mg [Caps...   112   7e-23
gb|ESW09500.1| hypothetical protein PHAVU_009G132700g [Phaseolus...   112   9e-23
gb|AEP33764.1| organelle transcript processing 82, partial [Iber...   112   9e-23
ref|XP_002869013.1| pentatricopeptide repeat-containing protein ...   112   9e-23
gb|AEP33772.1| organelle transcript processing 82, partial [Drab...   112   1e-22
gb|AEP33762.1| organelle transcript processing 82, partial [Hesp...   112   1e-22
ref|XP_002893972.1| F9C16.15 [Arabidopsis lyrata subsp. lyrata] ...   112   1e-22
ref|XP_006581604.1| PREDICTED: pentatricopeptide repeat-containi...   111   2e-22
ref|XP_006283244.1| hypothetical protein CARUB_v10004277mg [Caps...   111   2e-22
ref|XP_004231259.1| PREDICTED: pentatricopeptide repeat-containi...   111   2e-22
ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containi...   110   3e-22
gb|AEP33773.1| organelle transcript processing 82, partial [Lobu...   110   3e-22
gb|AEP33771.1| organelle transcript processing 82, partial [Thla...   110   3e-22

>ref|XP_006404547.1| hypothetical protein EUTSA_v10000418mg [Eutrema salsugineum]
           gi|557105675|gb|ESQ46000.1| hypothetical protein
           EUTSA_v10000418mg [Eutrema salsugineum]
          Length = 596

 Score =  119 bits (299), Expect = 6e-25
 Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHM-VVTGFE-PVTYLWNRLIGLYCDLGHLRDACQVFDKMPD 358
           LL RC   RS    K +H H+ + TGF+ P T L N LIG+Y   G   DAC+VFDKM  
Sbjct: 52  LLQRCGDTRSLKQGKWIHRHLKITTGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDKMHF 111

Query: 359 HNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREM 538
            N +SWN +ISG+   G++  A+ +FD  P+RDV+ WN MV+GYA+ G    A+  +RE+
Sbjct: 112 RNLYSWNNMISGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQNGNLHEALWFYREL 171

Query: 539 LGDSVRPNESSFVNVVRVC 595
               ++ NE SF  V+  C
Sbjct: 172 RRSGIKYNEFSFAGVLTAC 190



 Score = 79.3 bits (194), Expect = 8e-13
 Identities = 43/151 (28%), Positives = 75/151 (49%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           +  +L  C+++R     +  H  ++V GF     L   +I  Y   G +  A + FD+M 
Sbjct: 183 FAGVLTACVKSRELQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAHRCFDEMS 242

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
             +   W  LISG+A  G M  A  LF   P+++ + W  ++ GY ++G  D+A+ +FR+
Sbjct: 243 VKDIHIWTTLISGYAKLGDMEAADKLFCEMPEKNPVSWTALIAGYVRQGSGDQALDLFRK 302

Query: 536 MLGDSVRPNESSFVNVVRVCGLAEQGMGIHG 628
           M+   V+P + +F +   +C  A      HG
Sbjct: 303 MIALRVKPEQFTFSSC--LCASASTASLRHG 331


>ref|XP_006296137.1| hypothetical protein CARUB_v10025289mg [Capsella rubella]
           gi|482564845|gb|EOA29035.1| hypothetical protein
           CARUB_v10025289mg [Capsella rubella]
          Length = 597

 Score =  116 bits (291), Expect = 5e-24
 Identities = 56/138 (40%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFE-PVTYLWNRLIGLYCDLGHLRDACQVFDKMPDH 361
           LL +C   +S    K +H H+ +TGF+ P T L N LIG+Y   G   DAC+VFDKM   
Sbjct: 52  LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDKMHLR 111

Query: 362 NKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREML 541
           N +SWN ++SG    G++  A+ +FD  P+RDV+ WN MV+GYA+ G    A+  ++E+ 
Sbjct: 112 NLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQNGNLHEALWFYKELR 171

Query: 542 GDSVRPNESSFVNVVRVC 595
              ++ NE SF  ++  C
Sbjct: 172 RSGIKYNEFSFAGLLTAC 189



 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           +  LL  C+++R     +  H  +++ G      L   +I  Y   G +  A + FD+M 
Sbjct: 182 FAGLLTACVKSRHLQLNRQAHGQVLIAGLLSNVVLSCSIIDAYAKCGQMESAKRCFDEMA 241

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
             +   W  LISG+A  G M  A  LF   P+++ + W  ++ GY ++G  D+A+ +FR+
Sbjct: 242 VKDIHIWTTLISGYAKLGDMEAADKLFCEMPEKNPVSWTALIAGYVRQGSGDQALDLFRK 301

Query: 536 MLGDSVRPNESSFVNVVRVCGLA-----EQGMGIHG 628
           M+   V+P + +F +   +C  A       G  IHG
Sbjct: 302 MIALRVKPEQFTFSSC--LCASASIASLRHGKQIHG 335


>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326194|gb|EFH56614.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 599

 Score =  115 bits (288), Expect = 1e-23
 Identities = 57/143 (39%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFE-PVTYLWNRLIGLYCDLGHLRDACQVFDKMPDH 361
           LL +C   +S    K +H H+ +TGF+ P T L N LIG+Y   G   DAC+VFD+M   
Sbjct: 52  LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111

Query: 362 NKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREML 541
           N +SWN ++SG    G++  A+ +FD  P+RDV+ WN MV+GYA+ G    A+  F+E+ 
Sbjct: 112 NLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELR 171

Query: 542 GDSVRPNESSFVNVVRVCGLAEQ 610
              ++ NE SF  ++  C  + Q
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQ 194



 Score = 79.7 bits (195), Expect = 6e-13
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           +  LL  C+++R     +  H  ++V GF     L   +I  Y   G +  A + FD+M 
Sbjct: 182 FAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMT 241

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
             +   W  LISG+A  G M  A  LF   P+++ + W  ++ GY ++G  D A+ +FR+
Sbjct: 242 VKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRK 301

Query: 536 MLGDSVRPNESSFVNVVRVCGLA-----EQGMGIHG 628
           M+   V+P + +F +   +C  A       G  IHG
Sbjct: 302 MIAMRVKPEQFTFSSC--LCASASIASLRHGKQIHG 335


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score =  114 bits (286), Expect = 2e-23
 Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFE-PVTYLWNRLIGLYCDLGHLRDACQVFDKMPDH 361
           LL +C   +S    K +H H+ +TGF+ P T L N LIG+Y   G   DAC+VFD+M   
Sbjct: 52  LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111

Query: 362 NKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREML 541
           N +SWN ++SG+   G++  A+ +FD  P+RDV+ WN MV+GYA+ G    A+  ++E  
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171

Query: 542 GDSVRPNESSFVNVVRVCGLAEQ 610
              ++ NE SF  ++  C  + Q
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQ 194



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           +  LL  C+++R     +  H  ++V GF     L   +I  Y   G +  A + FD+M 
Sbjct: 182 FAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMT 241

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
             +   W  LISG+A  G M  A+ LF   P+++ + W  ++ GY ++G  +RA+ +FR+
Sbjct: 242 VKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRK 301

Query: 536 MLGDSVRPNESSFVNVVRVCGLA-----EQGMGIHG 628
           M+   V+P + +F +   +C  A       G  IHG
Sbjct: 302 MIALGVKPEQFTFSSC--LCASASIASLRHGKEIHG 335


>gb|ESW03682.1| hypothetical protein PHAVU_011G033500g [Phaseolus vulgaris]
          Length = 549

 Score =  113 bits (283), Expect = 4e-23
 Identities = 59/140 (42%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFE-PVTYLWNRLIGLYCDLGHLRDACQVFDKM 352
           +  LL RC + RS+ + K++H H+ +TGF+ P   L N LI +Y   G    A QVFDKM
Sbjct: 51  FATLLRRCSKTRSFREGKLIHLHLKLTGFKRPPALLANHLISMYFSCGDFVQARQVFDKM 110

Query: 353 PDHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFR 532
            D N ++WN ++SG+A  G+M  A+  F R P +D + WN MV GYA  G  D A+  +R
Sbjct: 111 DDRNLYTWNNMLSGYAKLGMMKQARSFFYRMPHKDYVSWNSMVAGYAHHGTFDEALRFYR 170

Query: 533 EMLGDSVRPNESSFVNVVRV 592
           +    SV  NE SF +V+ V
Sbjct: 171 QFRRLSVGYNEFSFASVLIV 190



 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 37/132 (28%), Positives = 66/132 (50%)
 Frame = +2

Query: 200 LRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHNKFSWN 379
           ++ + +   + +H  ++  GF     + + +I  Y   G + DA ++FD M   +  +W 
Sbjct: 192 VKLKEFELCRQIHGQVLAVGFLSNVVISSLIIDAYAKCGKMEDARRLFDYMAVRDVRAWT 251

Query: 380 ILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLGDSVRP 559
            L+S +A  G M     LF + P      W  ++ GY++ GM   A+GVFREM+   VRP
Sbjct: 252 TLVSAYAACGDMESGAELFSQMPKSQSCSWTSLIRGYSRNGMGHEALGVFREMIKHQVRP 311

Query: 560 NESSFVNVVRVC 595
           ++ +F   +  C
Sbjct: 312 DQFTFSTCLLAC 323


>ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis thaliana]
           gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g08070 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15
           [Arabidopsis thaliana] gi|332190118|gb|AEE28239.1|
           chloroplast RNA editing factor [Arabidopsis thaliana]
          Length = 741

 Score =  113 bits (283), Expect = 4e-23
 Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           +L  C +++++ + + +H H++  G +   Y+   LI +Y   G L DA +VFDK P  +
Sbjct: 140 VLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRD 199

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             S+  LI G+A+RG + +AQ LFD  P +DV+ WN M+ GYA+ G    A+ +F++M+ 
Sbjct: 200 VVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 259

Query: 545 DSVRPNESSFVNVVRVC---GLAEQGMGIH 625
            +VRP+ES+ V VV  C   G  E G  +H
Sbjct: 260 TNVRPDESTMVTVVSACAQSGSIELGRQVH 289


>ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338275|gb|EFH68692.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 741

 Score =  113 bits (283), Expect = 4e-23
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL  C +++++ + + +H H++  G++   ++   LI +Y   G L DA +VFD+ P  +
Sbjct: 140 LLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRD 199

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             S+  LI G+A+RG +  AQ LFD  P +DV+ WN M+ GYA+ G    A+ +F+EM+ 
Sbjct: 200 VVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMK 259

Query: 545 DSVRPNESSFVNVVRVC---GLAEQGMGIH 625
            ++RP+ES+ V VV  C   G  E G  +H
Sbjct: 260 TNIRPDESTMVTVVSACAQSGSIELGRQVH 289


>ref|XP_006303707.1| hypothetical protein CARUB_v10011813mg [Capsella rubella]
           gi|482572418|gb|EOA36605.1| hypothetical protein
           CARUB_v10011813mg [Capsella rubella]
          Length = 621

 Score =  112 bits (281), Expect = 7e-23
 Identities = 57/152 (37%), Positives = 86/152 (56%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           ++RL+DR L ++S   +++VH+ +V  GF P TY  NR + LY   G + DA Q+FD +P
Sbjct: 7   FSRLVDRSLLSKSPTLSRIVHAQIVKVGFIPNTYWGNRCLQLYFKSGSVVDALQLFDDIP 66

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
           D N  SWN+ + G    G   +A  +FD  P+RDV+ WN ++ G    G P+  M VF +
Sbjct: 67  DKNTISWNVCLKGLLKNGYFNYALEVFDEMPERDVVSWNTVISGLDFCGFPEYGMRVFLD 126

Query: 536 MLGDSVRPNESSFVNVVRVCGLAEQGMGIHGS 631
           M    VRP+E +F  +  +      G  IHG+
Sbjct: 127 MKSLVVRPSEFTFSILASLVSCVGHGEQIHGN 158


>gb|ESW09500.1| hypothetical protein PHAVU_009G132700g [Phaseolus vulgaris]
          Length = 286

 Score =  112 bits (280), Expect = 9e-23
 Identities = 59/147 (40%), Positives = 77/147 (52%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL+ CL  RS    KVVH+H    G    TYL NR + LY +LGH+ D  +VFD +   N
Sbjct: 21  LLNHCLSQRSLNFVKVVHAHFFKLGLNTYTYLGNRCLNLYSELGHINDTLKVFDDISHKN 80

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             SWNI + G    G +  A  +FD  P RDV+ WN M+ GYA  G    A+ +F EM G
Sbjct: 81  STSWNIFLKGFLKSGQLCKAFHVFDVMPARDVVTWNSMISGYASFGFLSHALELFVEMQG 140

Query: 545 DSVRPNESSFVNVVRVCGLAEQGMGIH 625
             VRP+  +F  V+ +         IH
Sbjct: 141 TDVRPSGFTFSIVMSLVSSPSHAKQIH 167


>gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  112 bits (280), Expect = 9e-23
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL  C +++++ + + +H H++  G +   Y+   LI +Y   G L DA +VFD+ P  +
Sbjct: 97  LLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRD 156

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             S+  LI G+A+RG + +AQ +FD  P +DV+ WN M+ GYA+ G    A+ +F++M+ 
Sbjct: 157 VVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 216

Query: 545 DSVRPNESSFVNVVRVC---GLAEQGMGIH 625
            +VRP+ES+ V VV  C   G  E G  +H
Sbjct: 217 TNVRPDESTMVTVVSACAQSGSIELGRQVH 246


>ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314849|gb|EFH45272.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 693

 Score =  112 bits (280), Expect = 9e-23
 Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 4/155 (2%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           Y  L+  C + R+  + K VH H+  +GF P   +WNR++G+Y   G L DA +VFD+MP
Sbjct: 90  YCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMP 149

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
           + +  SWN++++G+A  GL+  A+ LFD  P+RD   W  MV GY K+  P+ A+ ++  
Sbjct: 150 ERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSL 209

Query: 536 MLG-DSVRPN---ESSFVNVVRVCGLAEQGMGIHG 628
           M    + +PN    SS V          +G  IHG
Sbjct: 210 MQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHG 244



 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           +T ++DR  ++  + +   + S ++ +   P  Y ++ ++    DL       QV   M 
Sbjct: 289 WTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMT 348

Query: 356 ----DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMG 523
               D   F+ + LI  +   G +  A+ + D CP  D++    ++ GYA+ G PD A+ 
Sbjct: 349 RVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALK 408

Query: 524 VFREMLGDSVRPNESSFVNVVRVC---GLAEQGM 616
            F  +L    +P+  +FVNV+  C   GL E+G+
Sbjct: 409 YFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGL 442


>gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  112 bits (279), Expect = 1e-22
 Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL  C +++++ + + +H H++  G++   Y+   LI +Y   G L DA +VFD+    +
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 153

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             S+  LI G+A+RG + +AQ LFD  P +DV+ WN M+ GYA+ G    A+ +F++M+ 
Sbjct: 154 VVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 213

Query: 545 DSVRPNESSFVNVVRVC---GLAEQGMGIH 625
            +VRP+ES+ V VV  C   G  E G  +H
Sbjct: 214 TNVRPDESTMVTVVSACAQSGSIELGRQVH 243


>gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  112 bits (279), Expect = 1e-22
 Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL  C +++++ + + +H H++  GF+   Y+   LI +Y   G L DA +VFD+    +
Sbjct: 81  LLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRD 140

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             S+  LI+G+A+RG +  AQ +FD  P +DV+ WN M+ GYA+ G   +A+ +F+EM+ 
Sbjct: 141 VVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMK 200

Query: 545 DSVRPNESSFVNVVRVC---GLAEQGMGIH 625
            +V+P+ES+   VV  C   G  E G  +H
Sbjct: 201 TNVKPDESTMATVVSACAQSGSIELGRQVH 230


>ref|XP_002893972.1| F9C16.15 [Arabidopsis lyrata subsp. lyrata]
           gi|297339814|gb|EFH70231.1| F9C16.15 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  112 bits (279), Expect = 1e-22
 Identities = 55/152 (36%), Positives = 86/152 (56%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           ++RL+DR L ++    T++VH+ ++  GF   TY  NR + LY   G + DA ++FD +P
Sbjct: 7   FSRLVDRYLLSKCPTLTRIVHAQLLKAGFIRTTYWGNRCLQLYFKSGAVIDAFRLFDDIP 66

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
           D N  SWN+ + G    G + +A  LFD  P+RDV+ WN M+ G+   G P+ A+ VF +
Sbjct: 67  DKNTISWNVCLKGLFKNGFLNNALDLFDEMPERDVVSWNTMISGFVSCGFPEYAIRVFFD 126

Query: 536 MLGDSVRPNESSFVNVVRVCGLAEQGMGIHGS 631
           M    +RP E +F  +  +      G  IHG+
Sbjct: 127 MQRWVIRPTEFTFSILASLVSCVRHGEQIHGN 158


>ref|XP_006581604.1| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Glycine max]
          Length = 630

 Score =  111 bits (278), Expect = 2e-22
 Identities = 57/147 (38%), Positives = 79/147 (53%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL+ CL  +S    K+VH+H +  G    TYL NR + LY + GH+ DA +VFD +   N
Sbjct: 21  LLNHCLSQKSLNCVKIVHAHFLKLGLNTYTYLGNRCLDLYSEFGHINDALKVFDDISHKN 80

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             SWNI + G    G  G A  +FD  P RDV+ WN M+ GYA  G    A+ +F EM G
Sbjct: 81  STSWNICLKGLLKSGQPGKACHMFDAMPVRDVVSWNSMISGYASCGYLSHALELFVEMQG 140

Query: 545 DSVRPNESSFVNVVRVCGLAEQGMGIH 625
             VRP+  +F  ++ +   +     IH
Sbjct: 141 TGVRPSGFTFSILMSLVSSSPHAKQIH 167


>ref|XP_006283244.1| hypothetical protein CARUB_v10004277mg [Capsella rubella]
           gi|482551949|gb|EOA16142.1| hypothetical protein
           CARUB_v10004277mg [Capsella rubella]
          Length = 690

 Score =  111 bits (277), Expect = 2e-22
 Identities = 59/155 (38%), Positives = 84/155 (54%), Gaps = 4/155 (2%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           Y  L+  C + R+  + K VH H+  +GF P   +WNRL+G+Y   G L DA +VFD MP
Sbjct: 87  YCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLGMYAKCGSLVDARKVFDDMP 146

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
             +  SWN++++G+A  GL+  A+ LFD  P RD   W  MV GY K+  P+ A+ ++  
Sbjct: 147 KRDVCSWNLMVNGYAEVGLVDEARKLFDEMPQRDSYSWTAMVAGYVKKDQPEEALVLYSL 206

Query: 536 MLG-DSVRPN---ESSFVNVVRVCGLAEQGMGIHG 628
           M    + RPN    SS V          +G  IHG
Sbjct: 207 MQRVPNSRPNIFTVSSAVAAAAAIPCIRRGKEIHG 241



 Score = 66.2 bits (160), Expect = 7e-09
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           +T ++DR  ++R + +   + S ++ +   P  Y +  ++    DL       QV   M 
Sbjct: 286 WTSMIDRYFKSRRWREGFSLFSELIGSCERPNEYTFAGILNACADLTKEDLGKQVHGYMT 345

Query: 356 ----DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMG 523
               D   F+ + L+  +   G +  A+ + D CP  D++ W  ++ GYA+ G PD A+ 
Sbjct: 346 RIGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGYAQNGKPDEALK 405

Query: 524 VFREMLGDSVRPNESSFVNVVRVC---GLAEQGM 616
            F  +L    +P+  +FVNV+  C   GL E+G+
Sbjct: 406 YFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGL 439


>ref|XP_004231259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Solanum lycopersicum]
          Length = 602

 Score =  111 bits (277), Expect = 2e-22
 Identities = 53/138 (38%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFE-PVTYLWNRLIGLYCDLGHLRDACQVFDKMPDH 361
           ++ +C  +RS  + K +H H+  TG++ P T+L N LI +Y   G   +A +VFDKM   
Sbjct: 62  IIQQCANSRSREEGKWIHLHLKTTGWKHPTTFLANHLINMYSKCGDHMEARKVFDKMTSR 121

Query: 362 NKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREML 541
           N +SWN ++SG+   GL+  A+ LF++ P++DV+ WN MV+G+A+ G  + A+ ++RE  
Sbjct: 122 NLYSWNNMLSGYTKSGLIKAAKRLFEQMPEKDVVSWNTMVIGHAQAGYFNEALKLYREFR 181

Query: 542 GDSVRPNESSFVNVVRVC 595
             S+  NE SF  V+  C
Sbjct: 182 RLSIGFNEYSFAGVITAC 199



 Score = 83.6 bits (205), Expect = 4e-14
 Identities = 43/153 (28%), Positives = 85/153 (55%), Gaps = 3/153 (1%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           +  ++  C+++R ++ T  VH  + + GF     L + ++  Y   G + DA ++FD M 
Sbjct: 192 FAGVITACVKSRDFSLTGQVHCQVFIAGFLSNIVLSSSIVDAYAKCGKMSDARRLFDAMR 251

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
             +  +W  L+SG++  G M  A+ LF+  P+++ + W  +V GY+  GM  +A+ +F +
Sbjct: 252 VRDVLAWTTLVSGYSKCGDMVSARELFEAMPEKNPVSWTALVAGYSHSGMSIQALELFAK 311

Query: 536 MLGDSVRPNESSFVNVVRVC-GLA--EQGMGIH 625
           M+   V+P++ +F + +  C G+A  + G  IH
Sbjct: 312 MMKLQVQPDQFTFSSCLSACAGIASLKHGKQIH 344


>ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  110 bits (276), Expect = 3e-22
 Identities = 52/144 (36%), Positives = 81/144 (56%)
 Frame = +2

Query: 176 YTRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMP 355
           YT  L R L+ +     K +H+ ++  G     +L N L+  Y   G + DA +VFD+MP
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 356 DHNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFRE 535
             + FSWNI++SG+A  G +  A  +F+  P+ D + W  M+VGY + G  + A+G+FRE
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFRE 135

Query: 536 MLGDSVRPNESSFVNVVRVCGLAE 607
           M+ D V P + +  NV+  C   E
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVE 159



 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
 Frame = +2

Query: 179 TRLLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPD 358
           T +L  C         + VHS +V  G      + N L+ +Y   G    A  VFD+M  
Sbjct: 149 TNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKL 208

Query: 359 HNKFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREM 538
            +  SWN +IS H   GL+  AQ  F++  +RDV+ WN M+ GY + G    A+ +F +M
Sbjct: 209 KSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKM 268

Query: 539 LGD-SVRPNESSFVNVVRVCGLAEQ---GMGIH 625
           L D S +P++ +  + +  C   E    G  IH
Sbjct: 269 LMDSSSKPDKFTLASALSACANLENLKLGKQIH 301



 Score = 69.3 bits (168), Expect = 9e-10
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
 Frame = +2

Query: 188 LDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHNK 367
           L  C    +    K +H+H++ T F+    + N LI +Y   G +  A ++ ++    N 
Sbjct: 285 LSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNL 344

Query: 368 --FSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREML 541
              ++  L+ G+   G +  A+ +FD    RDV+ W  M+VGY + G    AM +FR M+
Sbjct: 345 DVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMI 404

Query: 542 GDSVRPNESSFVNVVRV---CGLAEQGMGIHGS 631
            +  +PN  +   ++ V       + G  IH S
Sbjct: 405 KEGPKPNNYTLATMLSVSSSLASLDHGRQIHAS 437


>gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  110 bits (276), Expect = 3e-22
 Identities = 53/150 (35%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL  C +++++ + + +H H++  G++   Y+   LI +Y   G L DA +VFD+    +
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 153

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             S+  LI+G+A++G +  AQ +FD  P +DV+ WN M+ GYA+ G    A+ +F+EM+ 
Sbjct: 154 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK 213

Query: 545 DSVRPNESSFVNVVRVCGLA---EQGMGIH 625
            +VRP+ES+ V+VV  C  +   E G  +H
Sbjct: 214 TNVRPDESTMVSVVSACAQSASIELGRQVH 243


>gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  110 bits (276), Expect = 3e-22
 Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
 Frame = +2

Query: 185 LLDRCLRARSYADTKVVHSHMVVTGFEPVTYLWNRLIGLYCDLGHLRDACQVFDKMPDHN 364
           LL  C +++++ + + +H H++  G+EP  Y+   LI +Y   G L DA +VFD+    +
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 365 KFSWNILISGHATRGLMGHAQFLFDRCPDRDVICWNVMVVGYAKRGMPDRAMGVFREMLG 544
             S+  LI+G+A+ G +  AQ +FD  P +DV+ WN M+ GYA+ G    A+ +F+EM+ 
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 545 DSVRPNESSFVNVVRVCGLA---EQGMGIH 625
            +VRP+E + V V+  C  +   E G  +H
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVH 221