BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00031275
         (502 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...    60   4e-07
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...    58   1e-06
emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]    55   1e-05

>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 26/56 (46%), Positives = 38/56 (67%)
 Frame = -2

Query: 168 NYWPNKSLD*KYPLQVFTKSTPSINHLRVFGSKCYYHFPDKNRRKLD*KERIRIFI 1
           N  P ++L  K PL+ ++ S PS++H++VFGS CY H PD+ RRK D K +  IF+
Sbjct: 360 NRTPTRTLKNKTPLEAWSDSKPSVSHMKVFGSICYVHIPDEKRRKWDDKSKRAIFV 415


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
 Frame = -2

Query: 180 TNLLNYWPNKSLD*KY-PLQVFTKSTPSINHLRVFGSKCYYHFPDKNRRKLD*KERIRIF 4
           T L N  P+KSL+    P+++++   PS++HL+VFG  CY H PD+ RRKLD K +  IF
Sbjct: 653 TYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKAKQGIF 712

Query: 3   I 1
           +
Sbjct: 713 V 713


>emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]
          Length = 894

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 28/63 (44%), Positives = 36/63 (57%)
 Frame = -2

Query: 189 NIFTNLLNYWPNKSLD*KYPLQVFTKSTPSINHLRVFGSKCYYHFPDKNRRKLD*KERIR 10
           N    LLN  P KSL  K P + +    P +NHL++FGS CYYH P+  R KLD + +  
Sbjct: 224 NTSVYLLNRLPTKSLKNKTPYEEWYGVKPFVNHLKIFGSICYYHVPEPKRSKLDSRAQKG 283

Query: 9   IFI 1
           I I
Sbjct: 284 ILI 286