BLASTX nr result

ID: Ephedra27_contig00031224 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00031224
         (361 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis t...    58   2e-07
ref|NP_001118648.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsi...    58   2e-07
dbj|BAB02722.1| unnamed protein product [Arabidopsis thaliana]         58   2e-07
gb|ABR16239.1| unknown [Picea sitchensis]                              53   7e-07
ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arab...    55   1e-06
ref|XP_006296888.1| hypothetical protein CARUB_v10012881mg [Caps...    55   2e-06
ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-...    50   3e-06
ref|XP_006841610.1| hypothetical protein AMTR_s00003p00213880 [A...    50   3e-06
ref|XP_006600390.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-...    50   3e-06

>ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana]
           gi|334185408|ref|NP_001189915.1| E3 ubiquitin-protein
           ligase UPL6 [Arabidopsis thaliana]
           gi|75247591|sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3
           ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein
           ligase 6 gi|20260606|gb|AAM13201.1| unknown protein
           [Arabidopsis thaliana] gi|37202000|gb|AAQ89615.1|
           At3g17205 [Arabidopsis thaliana]
           gi|332642397|gb|AEE75918.1| E3 ubiquitin-protein ligase
           UPL6 [Arabidopsis thaliana] gi|332642399|gb|AEE75920.1|
           E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana]
          Length = 1029

 Score = 57.8 bits (138), Expect(2) = 2e-07
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
           +Y+ ++  +D + FY+ +  +SLQD++LL+ ILK+ +     VN +    +G SV+ D+S
Sbjct: 510 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 569

Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCATS 276
           +      IQ  +   VS +L +L  WN RKQ+TS  DF A S
Sbjct: 570 KKNPIELIQNRMGIVVSELLSQLQDWNNRKQFTSSSDFQADS 611



 Score = 22.7 bits (47), Expect(2) = 2e-07
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 LMKYAPFLIPFSTR 361
           ++  APFLIPF++R
Sbjct: 630 ILMQAPFLIPFTSR 643


>ref|NP_001118648.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana]
           gi|332642398|gb|AEE75919.1| E3 ubiquitin-protein ligase
           UPL6 [Arabidopsis thaliana]
          Length = 1015

 Score = 57.8 bits (138), Expect(2) = 2e-07
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
           +Y+ ++  +D + FY+ +  +SLQD++LL+ ILK+ +     VN +    +G SV+ D+S
Sbjct: 496 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 555

Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCATS 276
           +      IQ  +   VS +L +L  WN RKQ+TS  DF A S
Sbjct: 556 KKNPIELIQNRMGIVVSELLSQLQDWNNRKQFTSSSDFQADS 597



 Score = 22.7 bits (47), Expect(2) = 2e-07
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 LMKYAPFLIPFSTR 361
           ++  APFLIPF++R
Sbjct: 616 ILMQAPFLIPFTSR 629


>dbj|BAB02722.1| unnamed protein product [Arabidopsis thaliana]
          Length = 963

 Score = 57.8 bits (138), Expect(2) = 2e-07
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
           +Y+ ++  +D + FY+ +  +SLQD++LL+ ILK+ +     VN +    +G SV+ D+S
Sbjct: 449 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 508

Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCATS 276
           +      IQ  +   VS +L +L  WN RKQ+TS  DF A S
Sbjct: 509 KKNPIELIQNRMGIVVSELLSQLQDWNNRKQFTSSSDFQADS 550



 Score = 22.7 bits (47), Expect(2) = 2e-07
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 LMKYAPFLIPFSTR 361
           ++  APFLIPF++R
Sbjct: 569 ILMQAPFLIPFTSR 582


>gb|ABR16239.1| unknown [Picea sitchensis]
          Length = 1032

 Score = 53.1 bits (126), Expect(2) = 7e-07
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKMVNVIIF-----------ARSGGS 150
           +Y+ ++  +D + FY++Q  +SLQD+K LV ILKE +  ++               SG +
Sbjct: 510 LYRHMLMIIDNEEFYEQQKPLSLQDVKALVIILKEALWQLLWVIPSKTSTPQKPVHSGSN 569

Query: 151 VNR-DISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
             R  +  I+  +    + +L +L  WNCR+++TSP+DF A
Sbjct: 570 QKRFPLQSIRERVSTLAAELLAQLQDWNCRREFTSPNDFHA 610



 Score = 25.4 bits (54), Expect(2) = 7e-07
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 308 RSVPLMKYAPFLIPFSTR 361
           R+  L+K APFL+PF+ R
Sbjct: 628 RAHELLKRAPFLVPFTNR 645


>ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp.
           lyrata] gi|297328893|gb|EFH59312.1| hypothetical protein
           ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata]
          Length = 1029

 Score = 55.5 bits (132), Expect(2) = 1e-06
 Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
           +Y+ ++  +D + FY+ +  +SLQD++LL+ ILK+ +     VN +    +G SV+ D+S
Sbjct: 510 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 569

Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
           +      IQ  +   VS +L +L  WN R+Q+TS  DF A
Sbjct: 570 KKNPVELIQNRVGVVVSELLSQLQDWNNRQQFTSSSDFQA 609



 Score = 22.7 bits (47), Expect(2) = 1e-06
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 LMKYAPFLIPFSTR 361
           ++  APFLIPF++R
Sbjct: 630 ILMQAPFLIPFTSR 643


>ref|XP_006296888.1| hypothetical protein CARUB_v10012881mg [Capsella rubella]
           gi|482565597|gb|EOA29786.1| hypothetical protein
           CARUB_v10012881mg [Capsella rubella]
          Length = 1029

 Score = 54.7 bits (130), Expect(2) = 2e-06
 Identities = 34/100 (34%), Positives = 60/100 (60%), Gaps = 11/100 (11%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
           +Y+ ++  +D + FY+ +  +SLQD++LL+ ILK+ +     VN +  + +G SV+ D+S
Sbjct: 510 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQSNTGKSVSNDLS 569

Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
           +      IQ  +   VS +L +L  WN R+++TS  DF A
Sbjct: 570 KKNPVELIQNRVGVVVSELLSQLQDWNNRQEFTSSTDFQA 609



 Score = 22.7 bits (47), Expect(2) = 2e-06
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 320 LMKYAPFLIPFSTR 361
           ++  APFLIPF++R
Sbjct: 630 ILMQAPFLIPFTSR 643


>ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoformX1 [Glycine
           max]
          Length = 1026

 Score = 50.4 bits (119), Expect(2) = 3e-06
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 12/101 (11%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSV----- 153
           +Y+ ++  +D + FY+++  +SL+D++ L+ IL++ +     VN I  A S  SV     
Sbjct: 506 VYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVPVSSA 565

Query: 154 --NRDISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
              + +  IQ  +   VS +L +L  WN R+Q+TSP +F A
Sbjct: 566 SKGQSVQTIQQRVCIVVSELLSQLQDWNNRRQFTSPSNFHA 606



 Score = 25.8 bits (55), Expect(2) = 3e-06
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 308 RSVPLMKYAPFLIPFSTR 361
           R+  ++K APFLIPF++R
Sbjct: 623 RANEILKQAPFLIPFTSR 640


>ref|XP_006841610.1| hypothetical protein AMTR_s00003p00213880 [Amborella trichopoda]
           gi|548843631|gb|ERN03285.1| hypothetical protein
           AMTR_s00003p00213880 [Amborella trichopoda]
          Length = 1021

 Score = 49.7 bits (117), Expect(2) = 3e-06
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKE-----------KMVNVIIFARSGGS 150
           +Y+ ++  +D + FY+++  +SLQD+++L+  LKE           K+ +++  A++  +
Sbjct: 510 VYRHMLMIIDNEEFYEQERPLSLQDIRVLITFLKEALWQLLWVSPGKLPSLLKAAKNISN 569

Query: 151 VNR-DISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
           + R  +  IQ  +    S +L +L  WN R+Q+TSP+DF A
Sbjct: 570 LRRLSVQFIQHKVSGGTSELLAQLQDWNNRRQFTSPNDFHA 610



 Score = 26.6 bits (57), Expect(2) = 3e-06
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 299 KCRRSVPLMKYAPFLIPFSTR 361
           K  R+  L+K APFL+PF++R
Sbjct: 625 KNTRARDLLKQAPFLVPFTSR 645


>ref|XP_006600390.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X2
           [Glycine max]
          Length = 1020

 Score = 50.4 bits (119), Expect(2) = 3e-06
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 12/101 (11%)
 Frame = +1

Query: 4   IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSV----- 153
           +Y+ ++  +D + FY+++  +SL+D++ L+ IL++ +     VN I  A S  SV     
Sbjct: 506 VYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVPVSSA 565

Query: 154 --NRDISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
              + +  IQ  +   VS +L +L  WN R+Q+TSP +F A
Sbjct: 566 SKGQSVQTIQQRVCIVVSELLSQLQDWNNRRQFTSPSNFHA 606



 Score = 25.8 bits (55), Expect(2) = 3e-06
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 308 RSVPLMKYAPFLIPFSTR 361
           R+  ++K APFLIPF++R
Sbjct: 623 RANEILKQAPFLIPFTSR 640


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