BLASTX nr result
ID: Ephedra27_contig00031224
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00031224
(361 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis t... 58 2e-07
ref|NP_001118648.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsi... 58 2e-07
dbj|BAB02722.1| unnamed protein product [Arabidopsis thaliana] 58 2e-07
gb|ABR16239.1| unknown [Picea sitchensis] 53 7e-07
ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arab... 55 1e-06
ref|XP_006296888.1| hypothetical protein CARUB_v10012881mg [Caps... 55 2e-06
ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-... 50 3e-06
ref|XP_006841610.1| hypothetical protein AMTR_s00003p00213880 [A... 50 3e-06
ref|XP_006600390.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-... 50 3e-06
>ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana]
gi|334185408|ref|NP_001189915.1| E3 ubiquitin-protein
ligase UPL6 [Arabidopsis thaliana]
gi|75247591|sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3
ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein
ligase 6 gi|20260606|gb|AAM13201.1| unknown protein
[Arabidopsis thaliana] gi|37202000|gb|AAQ89615.1|
At3g17205 [Arabidopsis thaliana]
gi|332642397|gb|AEE75918.1| E3 ubiquitin-protein ligase
UPL6 [Arabidopsis thaliana] gi|332642399|gb|AEE75920.1|
E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana]
Length = 1029
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
+Y+ ++ +D + FY+ + +SLQD++LL+ ILK+ + VN + +G SV+ D+S
Sbjct: 510 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 569
Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCATS 276
+ IQ + VS +L +L WN RKQ+TS DF A S
Sbjct: 570 KKNPIELIQNRMGIVVSELLSQLQDWNNRKQFTSSSDFQADS 611
Score = 22.7 bits (47), Expect(2) = 2e-07
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 320 LMKYAPFLIPFSTR 361
++ APFLIPF++R
Sbjct: 630 ILMQAPFLIPFTSR 643
>ref|NP_001118648.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana]
gi|332642398|gb|AEE75919.1| E3 ubiquitin-protein ligase
UPL6 [Arabidopsis thaliana]
Length = 1015
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
+Y+ ++ +D + FY+ + +SLQD++LL+ ILK+ + VN + +G SV+ D+S
Sbjct: 496 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 555
Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCATS 276
+ IQ + VS +L +L WN RKQ+TS DF A S
Sbjct: 556 KKNPIELIQNRMGIVVSELLSQLQDWNNRKQFTSSSDFQADS 597
Score = 22.7 bits (47), Expect(2) = 2e-07
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 320 LMKYAPFLIPFSTR 361
++ APFLIPF++R
Sbjct: 616 ILMQAPFLIPFTSR 629
>dbj|BAB02722.1| unnamed protein product [Arabidopsis thaliana]
Length = 963
Score = 57.8 bits (138), Expect(2) = 2e-07
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
+Y+ ++ +D + FY+ + +SLQD++LL+ ILK+ + VN + +G SV+ D+S
Sbjct: 449 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 508
Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCATS 276
+ IQ + VS +L +L WN RKQ+TS DF A S
Sbjct: 509 KKNPIELIQNRMGIVVSELLSQLQDWNNRKQFTSSSDFQADS 550
Score = 22.7 bits (47), Expect(2) = 2e-07
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 320 LMKYAPFLIPFSTR 361
++ APFLIPF++R
Sbjct: 569 ILMQAPFLIPFTSR 582
>gb|ABR16239.1| unknown [Picea sitchensis]
Length = 1032
Score = 53.1 bits (126), Expect(2) = 7e-07
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKMVNVIIF-----------ARSGGS 150
+Y+ ++ +D + FY++Q +SLQD+K LV ILKE + ++ SG +
Sbjct: 510 LYRHMLMIIDNEEFYEQQKPLSLQDVKALVIILKEALWQLLWVIPSKTSTPQKPVHSGSN 569
Query: 151 VNR-DISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
R + I+ + + +L +L WNCR+++TSP+DF A
Sbjct: 570 QKRFPLQSIRERVSTLAAELLAQLQDWNCRREFTSPNDFHA 610
Score = 25.4 bits (54), Expect(2) = 7e-07
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 308 RSVPLMKYAPFLIPFSTR 361
R+ L+K APFL+PF+ R
Sbjct: 628 RAHELLKRAPFLVPFTNR 645
>ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp.
lyrata] gi|297328893|gb|EFH59312.1| hypothetical protein
ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata]
Length = 1029
Score = 55.5 bits (132), Expect(2) = 1e-06
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
+Y+ ++ +D + FY+ + +SLQD++LL+ ILK+ + VN + +G SV+ D+S
Sbjct: 510 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQPNTGKSVSNDLS 569
Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
+ IQ + VS +L +L WN R+Q+TS DF A
Sbjct: 570 KKNPVELIQNRVGVVVSELLSQLQDWNNRQQFTSSSDFQA 609
Score = 22.7 bits (47), Expect(2) = 1e-06
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 320 LMKYAPFLIPFSTR 361
++ APFLIPF++R
Sbjct: 630 ILMQAPFLIPFTSR 643
>ref|XP_006296888.1| hypothetical protein CARUB_v10012881mg [Capsella rubella]
gi|482565597|gb|EOA29786.1| hypothetical protein
CARUB_v10012881mg [Capsella rubella]
Length = 1029
Score = 54.7 bits (130), Expect(2) = 2e-06
Identities = 34/100 (34%), Positives = 60/100 (60%), Gaps = 11/100 (11%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSVNRDIS 168
+Y+ ++ +D + FY+ + +SLQD++LL+ ILK+ + VN + + +G SV+ D+S
Sbjct: 510 VYKHMLMIVDNEEFYEREKPLSLQDIRLLIIILKQALWQLLWVNPLTQSNTGKSVSNDLS 569
Query: 169 Q------IQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
+ IQ + VS +L +L WN R+++TS DF A
Sbjct: 570 KKNPVELIQNRVGVVVSELLSQLQDWNNRQEFTSSTDFQA 609
Score = 22.7 bits (47), Expect(2) = 2e-06
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 320 LMKYAPFLIPFSTR 361
++ APFLIPF++R
Sbjct: 630 ILMQAPFLIPFTSR 643
>ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoformX1 [Glycine
max]
Length = 1026
Score = 50.4 bits (119), Expect(2) = 3e-06
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 12/101 (11%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSV----- 153
+Y+ ++ +D + FY+++ +SL+D++ L+ IL++ + VN I A S SV
Sbjct: 506 VYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVPVSSA 565
Query: 154 --NRDISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
+ + IQ + VS +L +L WN R+Q+TSP +F A
Sbjct: 566 SKGQSVQTIQQRVCIVVSELLSQLQDWNNRRQFTSPSNFHA 606
Score = 25.8 bits (55), Expect(2) = 3e-06
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 308 RSVPLMKYAPFLIPFSTR 361
R+ ++K APFLIPF++R
Sbjct: 623 RANEILKQAPFLIPFTSR 640
>ref|XP_006841610.1| hypothetical protein AMTR_s00003p00213880 [Amborella trichopoda]
gi|548843631|gb|ERN03285.1| hypothetical protein
AMTR_s00003p00213880 [Amborella trichopoda]
Length = 1021
Score = 49.7 bits (117), Expect(2) = 3e-06
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKE-----------KMVNVIIFARSGGS 150
+Y+ ++ +D + FY+++ +SLQD+++L+ LKE K+ +++ A++ +
Sbjct: 510 VYRHMLMIIDNEEFYEQERPLSLQDIRVLITFLKEALWQLLWVSPGKLPSLLKAAKNISN 569
Query: 151 VNR-DISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
+ R + IQ + S +L +L WN R+Q+TSP+DF A
Sbjct: 570 LRRLSVQFIQHKVSGGTSELLAQLQDWNNRRQFTSPNDFHA 610
Score = 26.6 bits (57), Expect(2) = 3e-06
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 299 KCRRSVPLMKYAPFLIPFSTR 361
K R+ L+K APFL+PF++R
Sbjct: 625 KNTRARDLLKQAPFLVPFTSR 645
>ref|XP_006600390.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X2
[Glycine max]
Length = 1020
Score = 50.4 bits (119), Expect(2) = 3e-06
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 12/101 (11%)
Frame = +1
Query: 4 IYQRIVGKLDYDRFYKEQDLISLQDMKLLVKILKEKM-----VNVIIFARSGGSV----- 153
+Y+ ++ +D + FY+++ +SL+D++ L+ IL++ + VN I A S SV
Sbjct: 506 VYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVPVSSA 565
Query: 154 --NRDISQIQWIILFYVSYVLHKLLAWNCRKQYTSPDDFCA 270
+ + IQ + VS +L +L WN R+Q+TSP +F A
Sbjct: 566 SKGQSVQTIQQRVCIVVSELLSQLQDWNNRRQFTSPSNFHA 606
Score = 25.8 bits (55), Expect(2) = 3e-06
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 308 RSVPLMKYAPFLIPFSTR 361
R+ ++K APFLIPF++R
Sbjct: 623 RANEILKQAPFLIPFTSR 640