BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00031083
         (494 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriode...   138   7e-44
gb|AAS86822.1| RNA polymerase II second largest subunit, partial...   138   7e-44
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su...   137   9e-44
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su...   137   9e-44
gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Trit...   137   1e-43
tpg|DAA50302.1| TPA: hypothetical protein ZEAMMB73_468424, parti...   137   1e-43
emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [...   139   1e-43
gb|AAB94059.1| RPB140 [Hordeum vulgare]                               137   1e-43
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   139   2e-43
emb|CAD88602.1| RNA polymerase II second largest subunit [Alangi...   138   2e-43
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...   138   3e-43
gb|AAY85230.1| RNA polymerase II second largest subunit [Rivina ...   140   3e-43
gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptid...   137   3e-43
gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japo...   137   3e-43
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su...   137   3e-43
gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra...   139   3e-43
emb|CAD89519.1| RNA polymerase II second largest subunit [Davidi...   138   3e-43
gb|AAY85194.1| RNA polymerase II second largest subunit [Buxus s...   139   3e-43
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su...   137   4e-43
gb|AAY85235.1| RNA polymerase II second largest subunit [Tetrace...   139   4e-43

>gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  138 bits (347), Expect(2) = 7e-44
 Identities = 69/105 (65%), Positives = 82/105 (78%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 409 QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 468

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN + LV TLR+LR +VD+N EVG++R+I LKELR+YTDYG+CSR
Sbjct: 469 RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSR 513



 Score = 65.1 bits (157), Expect(2) = 7e-44
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK HI+ LQ+R T     DE  GWH LVA G IEYVDT EEE
Sbjct: 512 SRPLFIVEKQRLLIKKKHIRSLQQRET----QDE--GWHDLVAKGFIEYVDTEEEE 561


>gb|AAS86822.1| RNA polymerase II second largest subunit, partial [Liriodendron
           tulipifera]
          Length = 539

 Score =  138 bits (347), Expect(2) = 7e-44
 Identities = 69/105 (65%), Positives = 82/105 (78%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 6   QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 65

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN + LV TLR+LR +VD+N EVG++R+I LKELR+YTDYG+CSR
Sbjct: 66  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSR 110



 Score = 65.1 bits (157), Expect(2) = 7e-44
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK HI+ LQ+R T     DE  GWH LVA G IEYVDT EEE
Sbjct: 109 SRPLFIVEKQRLLIKKKHIRSLQQRET----QDE--GWHDLVAKGFIEYVDTEEEE 158


>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
           X1 [Setaria italica]
          Length = 1226

 Score =  137 bits (344), Expect(2) = 9e-44
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 559 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 618

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 619 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 663



 Score = 65.9 bits (159), Expect(2) = 9e-44
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V++QRLLIKKAHI+ LQ+R T     DE  GWH LV+ G IEY+DT EEE
Sbjct: 662 SRPLFIVENQRLLIKKAHIRALQQRET----PDE--GWHELVSKGYIEYIDTEEEE 711


>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
           X2 [Setaria italica]
          Length = 1190

 Score =  137 bits (344), Expect(2) = 9e-44
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 523 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 582

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 583 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 627



 Score = 65.9 bits (159), Expect(2) = 9e-44
 Identities = 35/56 (62%), Positives = 42/56 (75%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V++QRLLIKKAHI+ LQ+R T     DE  GWH LV+ G IEY+DT EEE
Sbjct: 626 SRPLFIVENQRLLIKKAHIRALQQRET----PDE--GWHELVSKGYIEYIDTEEEE 675


>gb|EMS54198.1| DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu]
          Length = 1204

 Score =  137 bits (344), Expect(2) = 1e-43
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 512 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 571

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 572 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 616



 Score = 65.1 bits (157), Expect(2) = 1e-43
 Identities = 35/56 (62%), Positives = 41/56 (73%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V++QRLLIKK HI+ LQ+R T     DE  GWH LVA G IEY+DT EEE
Sbjct: 615 SRPLFIVENQRLLIKKKHIRALQQRET----PDE--GWHDLVAKGFIEYIDTEEEE 664


>tpg|DAA50302.1| TPA: hypothetical protein ZEAMMB73_468424, partial [Zea mays]
          Length = 762

 Score =  137 bits (344), Expect(2) = 1e-43
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 560 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 619

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 620 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 664



 Score = 65.1 bits (157), Expect(2) = 1e-43
 Identities = 35/56 (62%), Positives = 41/56 (73%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKKAHI+ LQ+R T     DE  GWH LV+ G IEY+DT EEE
Sbjct: 663 SRPLFIVEGQRLLIKKAHIRALQQRET----PDE--GWHELVSKGYIEYIDTEEEE 712


>emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
           Oxelman 2319]
          Length = 627

 Score =  139 bits (351), Expect(2) = 1e-43
 Identities = 70/105 (66%), Positives = 82/105 (78%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 7   QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 66

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR+LR +VD+N EVG++R+I LKELR+YTDYG+CSR
Sbjct: 67  RNPDLLVRTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSR 111



 Score = 62.4 bits (150), Expect(2) = 1e-43
 Identities = 34/56 (60%), Positives = 38/56 (67%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK  I  LQ+R  T     + FGWH LVA G IEYVDT EEE
Sbjct: 110 SRPLFIVEKQRLLIKKKDILALQQREYT-----DEFGWHDLVAKGYIEYVDTEEEE 160


>gb|AAB94059.1| RPB140 [Hordeum vulgare]
          Length = 555

 Score =  137 bits (344), Expect(2) = 1e-43
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 13  QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 72

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 73  RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 117



 Score = 65.1 bits (157), Expect(2) = 1e-43
 Identities = 35/56 (62%), Positives = 41/56 (73%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V++QRLLIKK HI+ LQ+R T     DE  GWH LVA G IEY+DT EEE
Sbjct: 116 SRPLFIVENQRLLIKKKHIRALQQRET----PDE--GWHDLVAKGFIEYIDTEEEE 165


>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  139 bits (351), Expect(2) = 2e-43
 Identities = 70/105 (66%), Positives = 83/105 (79%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 389 QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 448

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN + LVNTLR+LR +VD+N EVG++R+I LKELR+YTDYG+CSR
Sbjct: 449 RNPELLVNTLRKLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSR 493



 Score = 62.0 bits (149), Expect(2) = 2e-43
 Identities = 34/56 (60%), Positives = 38/56 (67%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK  I+ LQ+R T      E  GWH LVA G IEYVDT EEE
Sbjct: 492 SRPLFIVEKQRLLIKKKDIRALQQRETP-----EDGGWHDLVAKGYIEYVDTEEEE 542


>emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
          Length = 540

 Score =  138 bits (347), Expect(2) = 2e-43
 Identities = 71/105 (67%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 6   QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 65

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           R+ D LV TLR LR +VD+N EVG+VR+I LKELRIYTDYG+CSR
Sbjct: 66  RDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 110



 Score = 63.5 bits (153), Expect(2) = 2e-43
 Identities = 34/56 (60%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK  I+MLQ+R T      E  GWH LVA G IEY+DT EEE
Sbjct: 109 SRPLFIVEKQRLLIKKKDIQMLQQRET-----PEEGGWHDLVAKGFIEYIDTEEEE 159


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score =  138 bits (347), Expect(2) = 3e-43
 Identities = 71/105 (67%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 522 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 581

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           R+ D LV TLR LR +VD+N EVG+VR+I LKELRIYTDYG+CSR
Sbjct: 582 RDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 626



 Score = 63.2 bits (152), Expect(2) = 3e-43
 Identities = 33/56 (58%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK  I+ LQ+R T      E  GWH LV+NG IEY+DT EEE
Sbjct: 625 SRPLFIVEKQRLLIKKRDIRALQQRETP-----EEAGWHDLVSNGFIEYIDTEEEE 675


>gb|AAY85230.1| RNA polymerase II second largest subunit [Rivina humilis]
          Length = 219

 Score =  140 bits (354), Expect(2) = 3e-43
 Identities = 72/105 (68%), Positives = 82/105 (78%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A PI             E+SPAVIL  TK+FVNGCWVGIH
Sbjct: 6   QACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVILQATKIFVNGCWVGIH 65

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           R+ D LV TLR+LR +VD+N EVG+VR+I LKELRIYTDYG+CSR
Sbjct: 66  RDPDLLVKTLRQLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 110



 Score = 60.5 bits (145), Expect(2) = 3e-43
 Identities = 34/56 (60%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK  I+ LQ+R T    DD   GWH LVA G IEY+DT EEE
Sbjct: 109 SRPLFIVEKQRLLIKKKDIQALQQRETP---DDG--GWHDLVAKGYIEYIDTEEEE 159


>gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
           expressed [Oryza sativa Japonica Group]
           gi|125545063|gb|EAY91202.1| hypothetical protein
           OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  137 bits (344), Expect(2) = 3e-43
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 555 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 614

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 615 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 659



 Score = 63.9 bits (154), Expect(2) = 3e-43
 Identities = 33/56 (58%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V++QRLLIKK HI+ LQ+R T         GWH LVA G IEY+DT EEE
Sbjct: 658 SRPLFIVENQRLLIKKRHIRALQQRETPE------EGWHDLVAKGFIEYIDTEEEE 707


>gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  137 bits (344), Expect(2) = 3e-43
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 551 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 610

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 611 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 655



 Score = 63.9 bits (154), Expect(2) = 3e-43
 Identities = 33/56 (58%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V++QRLLIKK HI+ LQ+R T         GWH LVA G IEY+DT EEE
Sbjct: 654 SRPLFIVENQRLLIKKRHIRALQQRETPE------EGWHDLVAKGFIEYIDTEEEE 703


>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
           brachyantha]
          Length = 1184

 Score =  137 bits (344), Expect(2) = 3e-43
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 517 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 576

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 577 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 621



 Score = 63.9 bits (154), Expect(2) = 3e-43
 Identities = 33/56 (58%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V++QRLLIKK HI+ LQ+R T         GWH LVA G IEY+DT EEE
Sbjct: 620 SRPLFIVENQRLLIKKKHIRALQQRETPE------EGWHDLVAKGFIEYIDTEEEE 669


>gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
          Length = 551

 Score =  139 bits (350), Expect(2) = 3e-43
 Identities = 70/97 (72%), Positives = 79/97 (81%)
 Frame = -2

Query: 463 LALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIHRNSDQLVN 284
           LALMVYITVGSSA+PI             E+SPAVI T TKVFVNGCWVGIHRN DQLVN
Sbjct: 1   LALMVYITVGSSANPILEFLEEWSTESFEEISPAVIPTATKVFVNGCWVGIHRNPDQLVN 60

Query: 283 TLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           TLR+LR +VD+NPEVG+VR+I LKELR+YTDYG+CSR
Sbjct: 61  TLRQLRRQVDVNPEVGVVRDIPLKELRLYTDYGRCSR 97



 Score = 61.6 bits (148), Expect(2) = 3e-43
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLFVVK+QRLLI+K  I  LQER ++    DE  GWH LVA G IEYVDT EEE
Sbjct: 96  SRPLFVVKNQRLLIRKPDIIRLQERTSS----DE--GWHDLVARGFIEYVDTEEEE 145


>emb|CAD89519.1| RNA polymerase II second largest subunit [Davidia involucrata]
          Length = 396

 Score =  138 bits (347), Expect(2) = 3e-43
 Identities = 71/105 (67%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 6   QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 65

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           R+ D LV TLR LR +VD+N EVG+VR+I LKELRIYTDYG+CSR
Sbjct: 66  RDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 110



 Score = 62.8 bits (151), Expect(2) = 3e-43
 Identities = 33/56 (58%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK  I++LQ+R T      E  GWH LVA G IEY+DT EEE
Sbjct: 109 SRPLFIVEKQRLLIKKKDIQVLQQRKTP-----EEVGWHDLVAKGFIEYIDTEEEE 159


>gb|AAY85194.1| RNA polymerase II second largest subunit [Buxus sempervirens]
          Length = 219

 Score =  139 bits (350), Expect(2) = 3e-43
 Identities = 70/105 (66%), Positives = 82/105 (78%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVY+TVGS+A+PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 6   QACGLVKNLALMVYMTVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 65

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR+LR +VD+N EVG++R+I LKELRIYTDYG+CSR
Sbjct: 66  RNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRIYTDYGRCSR 110



 Score = 61.6 bits (148), Expect(2) = 3e-43
 Identities = 32/56 (57%), Positives = 38/56 (67%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V  QRLLIKK  I+ LQ+R +T +      GWH LVA G IEY+DT EEE
Sbjct: 109 SRPLFIVDKQRLLIKKKDIRALQQRESTEVG-----GWHDLVAKGYIEYIDTEEEE 159


>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Brachypodium distachyon]
          Length = 1228

 Score =  137 bits (344), Expect(2) = 4e-43
 Identities = 69/105 (65%), Positives = 80/105 (76%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI    K+FVNGCWVGIH
Sbjct: 561 QACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIH 620

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR LR ++D+N EVG+VR+I LKELR+YTDYG+CSR
Sbjct: 621 RNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSR 665



 Score = 63.5 bits (153), Expect(2) = 4e-43
 Identities = 35/56 (62%), Positives = 39/56 (69%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V  QRLLIKK HI+ LQ+R T     DE  GWH LVA G IEY+DT EEE
Sbjct: 664 SRPLFIVDGQRLLIKKKHIRALQQRET----PDE--GWHDLVAKGFIEYIDTEEEE 713


>gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  139 bits (351), Expect(2) = 4e-43
 Identities = 70/105 (66%), Positives = 82/105 (78%)
 Frame = -2

Query: 487 QAYGLVKNLALMVYITVGSSASPIXXXXXXXXXXXXXEVSPAVILTVTKVFVNGCWVGIH 308
           QA GLVKNLALMVYITVGS+A+PI             E+SPAVI   TK+FVNGCWVGIH
Sbjct: 417 QACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIH 476

Query: 307 RNSDQLVNTLRELR*KVDINPEVGIVRNILLKELRIYTDYGQCSR 173
           RN D LV TLR+LR +VD+N EVG++R+I LKELR+YTDYG+CSR
Sbjct: 477 RNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSR 521



 Score = 60.8 bits (146), Expect(2) = 4e-43
 Identities = 33/56 (58%), Positives = 38/56 (67%)
 Frame = -1

Query: 170 SMPLFVVKDQRLLIKKAHIKMLQERATTSIKDDEPFGWHSLVANGCIEYVDT*EEE 3
           S PLF+V+ QRLLIKK  I+ LQ+R     +  E  GWH LVA G IEYVDT EEE
Sbjct: 520 SRPLFIVEKQRLLIKKKDIRALQQR-----ESPEEGGWHDLVAKGYIEYVDTEEEE 570