BLASTX nr result
ID: Ephedra27_contig00030687
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00030687
(546 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE76644.1| unknown [Picea sitchensis] 115 4e-25
ref|XP_002972110.1| hypothetical protein SELMODRAFT_412612 [Sela... 112 4e-24
ref|XP_002993563.1| hypothetical protein SELMODRAFT_137237 [Sela... 112 4e-24
ref|XP_004296072.1| PREDICTED: DNA repair and recombination prot... 105 3e-22
ref|XP_006423032.1| hypothetical protein CICLE_v10027772mg [Citr... 105 4e-22
ref|XP_001778343.1| predicted protein [Physcomitrella patens] gi... 107 4e-22
ref|XP_006829734.1| hypothetical protein AMTR_s00126p00116180 [A... 105 5e-22
ref|XP_006487098.1| PREDICTED: DNA repair and recombination prot... 105 5e-22
emb|CAN70202.1| hypothetical protein VITISV_021223 [Vitis vinifera] 104 8e-22
ref|XP_004237378.1| PREDICTED: DNA repair and recombination prot... 103 1e-21
ref|XP_006350409.1| PREDICTED: DNA repair and recombination prot... 103 1e-21
gb|EOX98236.1| RAD54 isoform 2 [Theobroma cacao] 103 1e-21
gb|EOX98238.1| RAD54 isoform 4, partial [Theobroma cacao] 103 1e-21
gb|EOX98235.1| DNA repair and recombination protein RAD54-like i... 103 1e-21
gb|EOX98237.1| RAD54 isoform 3 [Theobroma cacao] 103 1e-21
gb|EOX98239.1| RAD54 isoform 5 [Theobroma cacao] 103 1e-21
sp|A4PBL4.1|RAD54_ORYSJ RecName: Full=DNA repair and recombinati... 103 2e-21
gb|EEE57852.1| hypothetical protein OsJ_08484 [Oryza sativa Japo... 103 2e-21
gb|EEC74047.1| hypothetical protein OsI_09041 [Oryza sativa Indi... 103 2e-21
emb|CBI32424.3| unnamed protein product [Vitis vinifera] 102 3e-21
>gb|ADE76644.1| unknown [Picea sitchensis]
Length = 407
Score = 115 bits (288), Expect(2) = 4e-25
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQ+CR+RNYPFLRLDGT+SI KRRK VQ+FNDPSQNEFAFLLSSKAGGCGLNLI
Sbjct: 27 QTLDLFAQICRERNYPFLRLDGTTSIGKRRKLVQRFNDPSQNEFAFLLSSKAGGCGLNLI 86
Score = 25.0 bits (53), Expect(2) = 4e-25
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 92 VLFDPDWNPAN 102
>ref|XP_002972110.1| hypothetical protein SELMODRAFT_412612 [Selaginella moellendorffii]
gi|300160409|gb|EFJ27027.1| hypothetical protein
SELMODRAFT_412612 [Selaginella moellendorffii]
Length = 1011
Score = 112 bits (279), Expect(2) = 4e-24
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+RNYP++RLDG++SI KR+K VQKFNDPSQNEFAFLLSSKAGGCGLNLI
Sbjct: 491 QTLDLFAQLCRERNYPYVRLDGSTSIGKRQKLVQKFNDPSQNEFAFLLSSKAGGCGLNLI 550
Score = 25.0 bits (53), Expect(2) = 4e-24
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 556 VLFDPDWNPAN 566
>ref|XP_002993563.1| hypothetical protein SELMODRAFT_137237 [Selaginella moellendorffii]
gi|300138630|gb|EFJ05392.1| hypothetical protein
SELMODRAFT_137237 [Selaginella moellendorffii]
Length = 852
Score = 112 bits (279), Expect(2) = 4e-24
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+RNYP++RLDG++SI KR+K VQKFNDPSQNEFAFLLSSKAGGCGLNLI
Sbjct: 535 QTLDLFAQLCRERNYPYVRLDGSTSIGKRQKLVQKFNDPSQNEFAFLLSSKAGGCGLNLI 594
Score = 25.0 bits (53), Expect(2) = 4e-24
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 600 VLFDPDWNPAN 610
>ref|XP_004296072.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Fragaria vesca subsp. vesca]
Length = 926
Score = 105 bits (263), Expect(2) = 3e-22
Identities = 49/60 (81%), Positives = 57/60 (95%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V +FNDPS++EFAFLLSSKAGGCGLNLI
Sbjct: 559 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNQFNDPSKDEFAFLLSSKAGGCGLNLI 618
Score = 25.0 bits (53), Expect(2) = 3e-22
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 624 VLFDPDWNPAN 634
>ref|XP_006423032.1| hypothetical protein CICLE_v10027772mg [Citrus clementina]
gi|557524966|gb|ESR36272.1| hypothetical protein
CICLE_v10027772mg [Citrus clementina]
Length = 930
Score = 105 bits (262), Expect(2) = 4e-22
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V FNDPS+NEF FLLSSKAGGCGLNLI
Sbjct: 566 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKNEFVFLLSSKAGGCGLNLI 625
Score = 25.0 bits (53), Expect(2) = 4e-22
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 631 VLFDPDWNPAN 641
>ref|XP_001778343.1| predicted protein [Physcomitrella patens]
gi|162670320|gb|EDQ56891.1| predicted protein
[Physcomitrella patens]
Length = 921
Score = 107 bits (268), Expect(2) = 4e-22
Identities = 49/59 (83%), Positives = 56/59 (94%)
Frame = -2
Query: 389 TLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
TLDLFAQ+CR+RNYPF+RLDGT+SI KR+K V +FNDP+QNEFAFLLSSKAGGCGLNLI
Sbjct: 541 TLDLFAQICRERNYPFVRLDGTTSIGKRQKLVSRFNDPNQNEFAFLLSSKAGGCGLNLI 599
Score = 22.7 bits (47), Expect(2) = 4e-22
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 225 VKFDPDWNTA 196
V FDPDWN A
Sbjct: 605 VLFDPDWNPA 614
>ref|XP_006829734.1| hypothetical protein AMTR_s00126p00116180 [Amborella trichopoda]
gi|548835253|gb|ERM97150.1| hypothetical protein
AMTR_s00126p00116180 [Amborella trichopoda]
Length = 988
Score = 105 bits (261), Expect(2) = 5e-22
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YPFLRLDGT+S++KR+K V KFND SQ+EF FLLSSKAGGCGLNLI
Sbjct: 617 QTLDLFAQLCRERKYPFLRLDGTTSVSKRQKLVNKFNDSSQDEFVFLLSSKAGGCGLNLI 676
Score = 25.0 bits (53), Expect(2) = 5e-22
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 682 VLFDPDWNPAN 692
>ref|XP_006487098.1| PREDICTED: DNA repair and recombination protein RAD54-like [Citrus
sinensis]
Length = 930
Score = 105 bits (261), Expect(2) = 5e-22
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V FNDPS++EFAFLLSSKAGGCGLNLI
Sbjct: 566 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLI 625
Score = 25.0 bits (53), Expect(2) = 5e-22
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 631 VLFDPDWNPAN 641
>emb|CAN70202.1| hypothetical protein VITISV_021223 [Vitis vinifera]
Length = 985
Score = 104 bits (259), Expect(2) = 8e-22
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SINKR+K V +FNDP ++EF FLLSSKAGGCGLNLI
Sbjct: 571 QTLDLFAQLCRERRYPYLRLDGTTSINKRQKLVNRFNDPLKDEFVFLLSSKAGGCGLNLI 630
Score = 25.0 bits (53), Expect(2) = 8e-22
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 636 VLFDPDWNPAN 646
>ref|XP_004237378.1| PREDICTED: DNA repair and recombination protein RAD54-like [Solanum
lycopersicum]
Length = 956
Score = 103 bits (258), Expect(2) = 1e-21
Identities = 48/60 (80%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLF+QLCR+R YPFLRLDGT+SI+KR+K V FNDP+++EFAFLLSSKAGGCGLNLI
Sbjct: 568 QTLDLFSQLCRERRYPFLRLDGTTSISKRQKLVNHFNDPAKDEFAFLLSSKAGGCGLNLI 627
Score = 25.0 bits (53), Expect(2) = 1e-21
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 633 VLFDPDWNPAN 643
>ref|XP_006350409.1| PREDICTED: DNA repair and recombination protein RAD54-like [Solanum
tuberosum]
Length = 952
Score = 103 bits (258), Expect(2) = 1e-21
Identities = 48/60 (80%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLF+QLCR+R YPFLRLDGT+SI+KR+K V FNDP+++EFAFLLSSKAGGCGLNLI
Sbjct: 566 QTLDLFSQLCRERRYPFLRLDGTTSISKRQKLVNHFNDPAKDEFAFLLSSKAGGCGLNLI 625
Score = 25.0 bits (53), Expect(2) = 1e-21
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 631 VLFDPDWNPAN 641
>gb|EOX98236.1| RAD54 isoform 2 [Theobroma cacao]
Length = 676
Score = 103 bits (257), Expect(2) = 1e-21
Identities = 47/60 (78%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V +FNDP+++EF FLLSSKAGGCGLNLI
Sbjct: 580 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPTKDEFVFLLSSKAGGCGLNLI 639
Score = 25.4 bits (54), Expect(2) = 1e-21
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 225 VKFDPDWNTANSMI 184
V FDPDWN AN +
Sbjct: 645 VLFDPDWNPANDKL 658
>gb|EOX98238.1| RAD54 isoform 4, partial [Theobroma cacao]
Length = 661
Score = 103 bits (257), Expect(2) = 1e-21
Identities = 47/60 (78%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V +FNDP+++EF FLLSSKAGGCGLNLI
Sbjct: 565 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPTKDEFVFLLSSKAGGCGLNLI 624
Score = 25.4 bits (54), Expect(2) = 1e-21
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 225 VKFDPDWNTANSMI 184
V FDPDWN AN +
Sbjct: 630 VLFDPDWNPANDKL 643
>gb|EOX98235.1| DNA repair and recombination protein RAD54-like isoform 1
[Theobroma cacao]
Length = 968
Score = 103 bits (257), Expect(2) = 1e-21
Identities = 47/60 (78%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V +FNDP+++EF FLLSSKAGGCGLNLI
Sbjct: 580 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPTKDEFVFLLSSKAGGCGLNLI 639
Score = 25.0 bits (53), Expect(2) = 1e-21
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 645 VLFDPDWNPAN 655
>gb|EOX98237.1| RAD54 isoform 3 [Theobroma cacao]
Length = 801
Score = 103 bits (257), Expect(2) = 1e-21
Identities = 47/60 (78%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V +FNDP+++EF FLLSSKAGGCGLNLI
Sbjct: 580 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPTKDEFVFLLSSKAGGCGLNLI 639
Score = 25.0 bits (53), Expect(2) = 1e-21
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 645 VLFDPDWNPAN 655
>gb|EOX98239.1| RAD54 isoform 5 [Theobroma cacao]
Length = 668
Score = 103 bits (257), Expect(2) = 1e-21
Identities = 47/60 (78%), Positives = 56/60 (93%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SI+KR+K V +FNDP+++EF FLLSSKAGGCGLNLI
Sbjct: 580 QTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPTKDEFVFLLSSKAGGCGLNLI 639
Score = 25.0 bits (53), Expect(2) = 1e-21
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 645 VLFDPDWNPAN 655
>sp|A4PBL4.1|RAD54_ORYSJ RecName: Full=DNA repair and recombination protein RAD54;
Short=OsRad54 gi|144369229|dbj|BAF56217.1| OsRad54
[Oryza sativa Japonica Group]
Length = 980
Score = 103 bits (256), Expect(2) = 2e-21
Identities = 46/60 (76%), Positives = 55/60 (91%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP++RLDG +SINKR+K V +FNDPS++EF FLLSSKAGGCGLNL+
Sbjct: 617 QTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLV 676
Score = 24.6 bits (52), Expect(2) = 2e-21
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
+ FDPDWN AN
Sbjct: 682 ILFDPDWNPAN 692
>gb|EEE57852.1| hypothetical protein OsJ_08484 [Oryza sativa Japonica Group]
Length = 952
Score = 103 bits (256), Expect(2) = 2e-21
Identities = 46/60 (76%), Positives = 55/60 (91%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP++RLDG +SINKR+K V +FNDPS++EF FLLSSKAGGCGLNL+
Sbjct: 617 QTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLV 676
Score = 24.6 bits (52), Expect(2) = 2e-21
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
+ FDPDWN AN
Sbjct: 682 ILFDPDWNPAN 692
>gb|EEC74047.1| hypothetical protein OsI_09041 [Oryza sativa Indica Group]
Length = 952
Score = 103 bits (256), Expect(2) = 2e-21
Identities = 46/60 (76%), Positives = 55/60 (91%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP++RLDG +SINKR+K V +FNDPS++EF FLLSSKAGGCGLNL+
Sbjct: 617 QTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLV 676
Score = 24.6 bits (52), Expect(2) = 2e-21
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
+ FDPDWN AN
Sbjct: 682 ILFDPDWNPAN 692
>emb|CBI32424.3| unnamed protein product [Vitis vinifera]
Length = 1112
Score = 102 bits (254), Expect(2) = 3e-21
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -2
Query: 392 QTLDLFAQLCRKRNYPFLRLDGTSSINKRRKFVQKFNDPSQNEFAFLLSSKAGGCGLNLI 213
QTLDLFAQLCR+R YP+LRLDGT+SINKR+K V +F+DP ++EF FLLSSKAGGCGLNLI
Sbjct: 742 QTLDLFAQLCRERRYPYLRLDGTTSINKRQKLVNRFSDPLKDEFVFLLSSKAGGCGLNLI 801
Score = 25.0 bits (53), Expect(2) = 3e-21
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 225 VKFDPDWNTAN 193
V FDPDWN AN
Sbjct: 807 VLFDPDWNPAN 817