BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00030075
         (476 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003376808.1| retrovirus-related Pol polyprotein from tran...    52   5e-08
ref|XP_003376336.1| retrovirus-related Pol polyprotein from tran...    50   2e-07
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                        61   2e-07
gb|ABA96192.2| retrotransposon protein, putative, Ty1-copia subc...    59   5e-07
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...    55   7e-07
emb|CAI72292.1| putative polyprotein [Phytophthora infestans]          59   9e-07
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157...    58   1e-06
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]    44   2e-06
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]    44   3e-06
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]    44   3e-06
gb|EOY10712.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) ...    56   4e-06
ref|XP_003216126.1| PREDICTED: copia protein-like [Anolis caroli...    49   4e-06
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]    43   8e-06

>ref|XP_003376808.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trichinella spiralis] gi|316974460|gb|EFV57947.1|
           retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Trichinella spiralis]
          Length = 1324

 Score = 51.6 bits (122), Expect(2) = 5e-08
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = -3

Query: 279 DVQLINIEEKMERWHQRFGHLNRDYMRILQN-FISGLSQLQKHQTICEACCKGK*MITL* 103
           D   + + +  + WH+R GHL+R  M++LQ+   +G+      +T C  C KGK      
Sbjct: 411 DQWAMTVHDVPDLWHRRLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGKQCRLPF 470

Query: 102 PKFSKITTKRPLELIHSDIRCYGNEATIGNHKFY 1
           PK +   +K  LEL+HSDI      A++G  +++
Sbjct: 471 PKSATKRSKEVLELVHSDICGPMQVASVGGARYF 504



 Score = 30.8 bits (68), Expect(2) = 5e-08
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -2

Query: 475 HNVVFSPGLSYNLISVSHLQAMRCSVIFDIRNNC 374
           H+V  +P L+ NL+SVS + A + ++IFD  N C
Sbjct: 348 HDVRHAPELALNLLSVSRIAAQKKTLIFD-ENGC 380


>ref|XP_003376336.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trichinella spiralis] gi|316974954|gb|EFV58419.1|
           retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Trichinella spiralis]
          Length = 1003

 Score = 50.1 bits (118), Expect(2) = 2e-07
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = -3

Query: 279 DVQLINIEEKMERWHQRFGHLNRDYMRILQN-FISGLSQLQKHQTICEACCKGK*MITL* 103
           D   + + +  + WH++ GHL+R  M++LQ+   +G+      +T C  C KGK      
Sbjct: 104 DQWAMTVHDVPDLWHRQLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGKQCRLPF 163

Query: 102 PKFSKITTKRPLELIHSDIRCYGNEATIGNHKFY 1
           PK +   +K  LEL+HSDI      A++G  +++
Sbjct: 164 PKSATKRSKEVLELVHSDICGPMQVASVGGARYF 197



 Score = 30.8 bits (68), Expect(2) = 2e-07
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -2

Query: 475 HNVVFSPGLSYNLISVSHLQAMRCSVIFDIRNNC 374
           H+V  +P L+ NL+SVS + A + ++IFD  N C
Sbjct: 41  HDVRHAPELALNLLSVSRIAAQKKTLIFD-ENGC 73


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
 Frame = -3

Query: 267 INIEEKMERWHQRFGHLNRDYMRIL--QNFISGLSQLQKHQTICEACCKGK*MITL*PKF 94
           +NIE+K   WH RFGHL+   ++ L  +N + GL  +      CE C   K + T  PK 
Sbjct: 480 VNIEDKASLWHLRFGHLHHGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTSFPKK 539

Query: 93  SKITTKRPLELIHSDI 46
           ++   K+PLELIH+DI
Sbjct: 540 AQYWAKQPLELIHTDI 555


>gb|ABA96192.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1328

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
 Frame = -3

Query: 255 EKMERWHQRFGHLNRDYMRIL--QNFISGLSQLQKHQTICEACCKGK*MITL*PKFSKIT 82
           E   RWH RFGHLN   +R +  +  + GL +L++   +CE C  GK   T  P+  ++ 
Sbjct: 489 ENAWRWHDRFGHLNFPALRKMAREGMVRGLPELEQTDQLCEGCLAGKQRRTPFPEQGQLR 548

Query: 81  TKRPLELIHSDIRCYGNEATIGNHKFY 1
            +R LEL+H D+      AT G  K++
Sbjct: 549 AERALELVHGDLCGPITPATPGGKKYF 575


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score = 55.1 bits (131), Expect(2) = 7e-07
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
 Frame = -3

Query: 258 EEKMERWHQRFGHLNRDYMRILQNF--ISGLSQLQKHQTICEACCKGK*MITL*PKFSKI 85
           EE+ + WH+RFGH+N D +  +Q    +  L + +  + IC AC  GK      PK S+ 
Sbjct: 451 EEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQS 510

Query: 84  TTKRPLELIHSDI 46
            T + LELIHSD+
Sbjct: 511 NTNKTLELIHSDV 523



 Score = 23.5 bits (49), Expect(2) = 7e-07
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 472 NVVFSPGLSYNLISVSHLQAMRCSVIFDIRNNC 374
           +V++ P L+ NL+SVS + +    VIF+  N C
Sbjct: 381 DVLYVPELARNLLSVSQMISNGYRVIFE-DNKC 412


>emb|CAI72292.1| putative polyprotein [Phytophthora infestans]
          Length = 1353

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = -3

Query: 276 VQLINIEEKMERWHQRFGHLNRDYMRILQNFISGLSQLQK-HQTICEACCKGK*MITL*P 100
           VQ    + + E WH R GHLN+D +   Q    G+  ++  ++T+C  C KGK  +T  P
Sbjct: 369 VQYAGPDSEWELWHARMGHLNKDALTKTQRSTIGIPHVKNGNETLCGGCMKGKQTVTTFP 428

Query: 99  KFSKITTKRPLELIHSDI 46
             S   T R LEL+H+D+
Sbjct: 429 SRSLTRTTRVLELVHTDV 446


>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
           copia-type polyprotein [Glycine max]
          Length = 1042

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
 Frame = -3

Query: 264 NIEEKMERWHQRFGHLNRDYMRIL--QNFISGLSQLQKHQTICEACCKGK*MITL*PKFS 91
           +I+++   WH RFGHLN   ++ L  +  + G+ Q+     +CEAC  GK      PK +
Sbjct: 151 SIKDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEA 210

Query: 90  KITTKRPLELIHSDIRCYGNEATIGNHKFY 1
               K PL+L+++D+    N  + GN+K++
Sbjct: 211 NSRAKEPLQLVYTDVCGPINPPSCGNNKYF 240


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score = 44.3 bits (103), Expect(2) = 2e-06
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
 Frame = -3

Query: 330 HVEQEPNRVYVFKPSYYDVQLINIEEKMER--WHQRFGHLNRDYMRIL--QNFISGLSQL 163
           +V    N+++  + S  +   + ++E  E   WH R+GHLN   +++L  +  + GL ++
Sbjct: 408 NVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKI 467

Query: 162 QKHQTICEACCKGK*MITL*PKFSKITTKRPLELIHSDIRCYGNEATIGNHKFY 1
                +CE C  GK      PK         LE+IH+D+      A+ G  +++
Sbjct: 468 DS-VNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYF 520



 Score = 32.7 bits (73), Expect(2) = 2e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 475 HNVVFSPGLSYNLISVSHLQAMRCSVIFDIRNNCNYCTIKNQATD*IM 332
           +NV F P L+ NL+SV  L     S++FD       C IK++ +D I+
Sbjct: 363 YNVYFIPSLTQNLLSVGQLMVSGYSILFDGAT----CVIKDKKSDQII 406


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score = 43.9 bits (102), Expect(2) = 3e-06
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
 Frame = -3

Query: 327 VEQEPNRVYVFKPSYYDVQLINIEEKMER--WHQRFGHLNRDYMRIL--QNFISGLSQLQ 160
           V    N+++  + S  +   + ++E  E   WH R+GHLN   +++L  +  + GL ++ 
Sbjct: 394 VRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKID 453

Query: 159 KHQTICEACCKGK*MITL*PKFSKITTKRPLELIHSDIRCYGNEATIGNHKFY 1
               +CE C  GK      PK         LE+IH+D+      A+ G  +++
Sbjct: 454 S-VNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYF 505



 Score = 32.7 bits (73), Expect(2) = 3e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 475 HNVVFSPGLSYNLISVSHLQAMRCSVIFDIRNNCNYCTIKNQATD*IM 332
           +NV F P L+ NL+SV  L     S++FD       C IK++ +D I+
Sbjct: 348 YNVYFIPSLTQNLLSVGQLMVSGYSILFDGAT----CVIKDKKSDQII 391


>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
          Length = 1183

 Score = 43.9 bits (102), Expect(2) = 3e-06
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
 Frame = -3

Query: 327 VEQEPNRVYVFKPSYYDVQLINIEEKMER--WHQRFGHLNRDYMRIL--QNFISGLSQLQ 160
           V    N+++  + S  +   + ++E  E   WH R+GHLN   +++L  +  + GL ++ 
Sbjct: 343 VRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKID 402

Query: 159 KHQTICEACCKGK*MITL*PKFSKITTKRPLELIHSDIRCYGNEATIGNHKFY 1
               +CE C  GK      PK         LE+IH+D+      A+ G  +++
Sbjct: 403 S-VNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYF 454



 Score = 32.7 bits (73), Expect(2) = 3e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 475 HNVVFSPGLSYNLISVSHLQAMRCSVIFDIRNNCNYCTIKNQATD*IM 332
           +NV F P L+ NL+SV  L     S++FD       C IK++ +D I+
Sbjct: 297 YNVYFIPSLTQNLLSVGQLMVSGYSILFDGAT----CVIKDKKSDQII 340


>gb|EOY10712.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma
           cacao]
          Length = 800

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = -3

Query: 246 ERWHQRFGHLNRDYMR--ILQNFISGLSQLQKHQTICEACCKGK*MITL*PKFSKITTKR 73
           E WH+R+GH+N  Y++  +L N ++GL  + K   +C  C  GK      PK    T  +
Sbjct: 187 ELWHRRYGHVNHSYLKQMVLHNLVNGLPNVSKPDKLCSTCQFGKQNRIAFPKTRSWTATQ 246

Query: 72  PLELIHSDIR 43
            L+L+H+D+R
Sbjct: 247 KLQLVHTDLR 256


>ref|XP_003216126.1| PREDICTED: copia protein-like [Anolis carolinensis]
          Length = 1366

 Score = 48.9 bits (115), Expect(2) = 4e-06
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
 Frame = -3

Query: 300 VFKPSYYDVQLINIEEK--MERWHQRFGHLNRDYMRILQNFISGLSQLQKHQTICEACCK 127
           +F+P +  + L   E++     WH+RFGH N  Y+   +     +      + ICE C K
Sbjct: 442 MFEPKFSGLALPECEKRNCARLWHERFGHANEKYVWNAKEVCRDMEVNSCCKEICETCIK 501

Query: 126 GK*MITL*PKFSKITTKRPLELIHSDIRCYGNEATIGNHKFY 1
            K      PK  +   +RPL++I SD+ C     ++G   ++
Sbjct: 502 AKACAPNVPKDKEFEAQRPLQVISSDV-CGPMSTSLGGSLYF 542



 Score = 26.9 bits (58), Expect(2) = 4e-06
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 472 NVVFSPGLSYNLISVSHLQAMRCSVIFD 389
           NV +S  +  NLISV+ L    C ++F+
Sbjct: 389 NVYYSKDIGTNLISVAKLMRHGCKIVFE 416


>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
          Length = 1109

 Score = 43.1 bits (100), Expect(2) = 8e-06
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
 Frame = -3

Query: 327 VEQEPNRVYVFKPSYYDVQLINIEEKMER--WHQRFGHLNRDYMRIL--QNFISGLSQLQ 160
           V    N+++  + S  +   + ++E  E   WH R+GHLN   +++L  +  + GL ++ 
Sbjct: 395 VRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKID 454

Query: 159 KHQTICEACCKGK*MITL*PKFSKITTKRPLELIHSDIRCYGNEATIGNHKFY 1
               +CE C  GK      PK         LE+IH+D+      A+ G  +++
Sbjct: 455 S-VNVCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQIASFGGSRYF 506



 Score = 32.0 bits (71), Expect(2) = 8e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 475 HNVVFSPGLSYNLISVSHLQAMRCSVIFDIRNNCNYCTIKNQATD*IM 332
           +NV F P L+ NL+SV  L     S++FD     + C IK++  D I+
Sbjct: 349 YNVYFIPSLTQNLLSVGQLMVSGYSILFD----GSTCVIKDKKFDQII 392