BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00030042
         (523 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002519996.1| hypothetical protein EpeqC_p062 (chloroplast...   325   4e-87
ref|YP_002519742.1| hypothetical protein GnpaC_p015 [Gnetum parv...   277   9e-73
ref|YP_002519736.1| hypothetical protein GnpaC_p007 [Gnetum parv...   277   9e-73
dbj|BAH11177.1| hypothetical protein (chloroplast) [Welwitschia ...   187   2e-45
ref|YP_001876619.1| hypothetical chloroplast RF2 [Welwitschia mi...   187   2e-45
ref|YP_003934173.1| hypothetical protein CedeC_p040 [Cedrus deod...   156   2e-36
gb|ACP51933.1| hypothetical chloroplast protein [Cedrus deodara]      156   2e-36
gb|AEX98881.1| hypothetical chloroplast RF2 (chloroplast) [Ginkg...   153   2e-35
gb|AEX98464.1| hypothetical chloroplast RF2 (chloroplast) [Ginkg...   153   2e-35
dbj|BAL72635.1| hypothetical protein (chloroplast) [Ginkgo biloba]    153   2e-35
ref|YP_005352751.1| ycf2 gene product (chloroplast) [Ginkgo bilo...   153   2e-35
gb|ABU85394.1| hypothetical protein RF2 [Ginkgo biloba]               153   2e-35
gb|AEQ37157.1| hypothetical chloroplast RF2 (chloroplast) [Ginkg...   152   4e-35
gb|ACP51437.1| hypothetical chloroplast protein [Abies firma]         152   4e-35
ref|YP_004891468.1| hypothetical protein Pssivw_p073 (chloroplas...   150   2e-34
gb|AET46427.1| hypothetical chloroplast protein, partial (chloro...   148   6e-34
ref|YP_008082869.1| hypothetical protein PACH01_0118 (chloroplas...   147   2e-33
ref|YP_004891689.1| hypothetical protein PimoC_p002 (chloroplast...   147   2e-33
gb|ABU85252.1| hypothetical protein RF2 [Cycas micronesica]           143   3e-32
ref|YP_007474610.1| hypothetical chloroplast RF2 (chloroplast) [...   142   5e-32

>ref|YP_002519996.1| hypothetical protein EpeqC_p062 (chloroplast) [Ephedra equisetina]
            gi|222139940|ref|YP_002520008.1| hypothetical protein
            EpeqC_p074 (chloroplast) [Ephedra equisetina]
            gi|220983597|dbj|BAH11364.1| hypothetical protein
            (chloroplast) [Ephedra equisetina]
            gi|220983609|dbj|BAH11376.1| hypothetical protein
            (chloroplast) [Ephedra equisetina]
          Length = 2125

 Score =  325 bits (833), Expect = 4e-87
 Identities = 163/174 (93%), Positives = 163/174 (93%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFGKTFSQFHRTLTMAEIMSPCIIWIPNIHVLERNTRTSX 180
            LVQSLAADFYIPLIKINLEWFFGKTFSQFHRTLTMAEIMSPCIIWIPNIHVLERNTRTS 
Sbjct: 1383 LVQSLAADFYIPLIKINLEWFFGKTFSQFHRTLTMAEIMSPCIIWIPNIHVLERNTRTSI 1442

Query: 181  XXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHIPRKVDPNLMTPNRLGQFI 360
                      ALLHRLLDHMDSCDENSFTSRRNIVFIASTHIPRKVDPNLMTPNRLGQFI
Sbjct: 1443 IKMDIIIKKKALLHRLLDHMDSCDENSFTSRRNIVFIASTHIPRKVDPNLMTPNRLGQFI 1502

Query: 361  NIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGYKARDLAGLVNET 522
            NIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGYKARDLAGLVNET
Sbjct: 1503 NIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGYKARDLAGLVNET 1556


>ref|YP_002519742.1| hypothetical protein GnpaC_p015 [Gnetum parvifolium]
            gi|512721616|ref|YP_008082235.1| hypothetical protein
            (chloroplast) [Gnetum montanum]
            gi|512721622|ref|YP_008082241.1| hypothetical protein
            (chloroplast) [Gnetum montanum]
            gi|220983484|dbj|BAH11252.1| hypothetical protein
            (chloroplast) [Gnetum parvifolium]
            gi|490345061|gb|AGL11081.1| hypothetical protein
            (chloroplast) [Gnetum montanum]
            gi|490345067|gb|AGL11087.1| hypothetical protein
            (chloroplast) [Gnetum montanum]
          Length = 2185

 Score =  277 bits (709), Expect = 9e-73
 Identities = 140/175 (80%), Positives = 147/175 (84%), Gaps = 2/175 (1%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG--KTFSQFHRTLTMAEIMSPCIIWIPNIHVLERNTRT 174
            LVQSLAAD Y+PLIKINLEWFF   KTFSQ HRTL MAEIMSPC+IWIP+IH LERN RT
Sbjct: 1438 LVQSLAADSYVPLIKINLEWFFASCKTFSQIHRTLIMAEIMSPCVIWIPSIHELERNNRT 1497

Query: 175  SXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHIPRKVDPNLMTPNRLGQ 354
            S           ALLHRLLDHMDSCDEN F SRRNIVFIASTHIPRKVDPNLMTPNR GQ
Sbjct: 1498 STIKREIFIKKKALLHRLLDHMDSCDENIFISRRNIVFIASTHIPRKVDPNLMTPNRFGQ 1557

Query: 355  FINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGYKARDLAGLVNE 519
            FINIR+LL+ QREKEF ILLRRK F+L KELFYLDDFGSRT+GY ARDLA LVNE
Sbjct: 1558 FINIRVLLIPQREKEFPILLRRKGFYLKKELFYLDDFGSRTVGYTARDLARLVNE 1612


>ref|YP_002519736.1| hypothetical protein GnpaC_p007 [Gnetum parvifolium]
            gi|220983478|dbj|BAH11246.1| hypothetical protein
            (chloroplast) [Gnetum parvifolium]
          Length = 2185

 Score =  277 bits (709), Expect = 9e-73
 Identities = 140/175 (80%), Positives = 147/175 (84%), Gaps = 2/175 (1%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG--KTFSQFHRTLTMAEIMSPCIIWIPNIHVLERNTRT 174
            LVQSLAAD Y+PLIKINLEWFF   KTFSQ HRTL MAEIMSPC+IWIP+IH LERN RT
Sbjct: 1438 LVQSLAADSYVPLIKINLEWFFASCKTFSQIHRTLIMAEIMSPCVIWIPSIHELERNNRT 1497

Query: 175  SXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHIPRKVDPNLMTPNRLGQ 354
            S           ALLHRLLDHMDSCDEN F SRRNIVFIASTHIPRKVDPNLMTPNR GQ
Sbjct: 1498 STIKREIFIKKKALLHRLLDHMDSCDENIFISRRNIVFIASTHIPRKVDPNLMTPNRFGQ 1557

Query: 355  FINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGYKARDLAGLVNE 519
            FINIR+LL+ QREKEF ILLRRK F+L KELFYLDDFGSRT+GY ARDLA LVNE
Sbjct: 1558 FINIRVLLIPQREKEFPILLRRKGFYLKKELFYLDDFGSRTVGYTARDLARLVNE 1612


>dbj|BAH11177.1| hypothetical protein (chloroplast) [Welwitschia mirabilis]
            gi|220983417|dbj|BAH11186.1| hypothetical protein
            (chloroplast) [Welwitschia mirabilis]
          Length = 2266

 Score =  187 bits (474), Expect = 2e-45
 Identities = 111/209 (53%), Positives = 125/209 (59%), Gaps = 36/209 (17%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG--KTFSQFHRTLTMAEIMSPCIIWIPNIHVLERNT-- 168
            LVQSLAAD Y+PLIK+NL+W F   KT  QF + L MAE+MSPCI+WIP+I  + R    
Sbjct: 1480 LVQSLAADSYVPLIKVNLDWLFSSYKTCPQFRQILKMAEVMSPCILWIPSIDQMARTDIY 1539

Query: 169  -------------------------------RTSXXXXXXXXXXXALLHRLLDHMD-SCD 252
                                           R S            LL  L++ M+ + D
Sbjct: 1540 TVLKEIDRFSTVLEKKEKHRTSPIDIKQKIDRISALKMDKFSKTGVLLCNLIEFMEKNYD 1599

Query: 253  ENSFTSRRNIVFIASTHIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFF 432
            EN F SRRNIV IASTH PRKVDP L+T NR  QFINIRMLL  QR+KEF ILLR K F 
Sbjct: 1600 ENLFLSRRNIVLIASTHDPRKVDPILLTLNRFSQFINIRMLLTPQRKKEFPILLRSKGFD 1659

Query: 433  LNKELFYLDDFGSRTIGYKARDLAGLVNE 519
            L KELFYLDDFGSRTIGY ARDL  LVNE
Sbjct: 1660 LKKELFYLDDFGSRTIGYTARDLVELVNE 1688


>ref|YP_001876619.1| hypothetical chloroplast RF2 [Welwitschia mirabilis]
            gi|187763154|ref|YP_001876628.1| hypothetical chloroplast
            RF2 [Welwitschia mirabilis] gi|163311674|gb|ABY26832.1|
            hypothetical chloroplast RF2 [Welwitschia mirabilis]
            gi|163311684|gb|ABY26842.1| hypothetical chloroplast RF2
            [Welwitschia mirabilis]
          Length = 2266

 Score =  187 bits (474), Expect = 2e-45
 Identities = 111/209 (53%), Positives = 125/209 (59%), Gaps = 36/209 (17%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG--KTFSQFHRTLTMAEIMSPCIIWIPNIHVLERNT-- 168
            LVQSLAAD Y+PLIK+NL+W F   KT  QF + L MAE+MSPCI+WIP+I  + R    
Sbjct: 1480 LVQSLAADSYVPLIKVNLDWLFSSYKTCPQFRQILKMAEVMSPCILWIPSIDQMARTDIY 1539

Query: 169  -------------------------------RTSXXXXXXXXXXXALLHRLLDHMD-SCD 252
                                           R S            LL  L++ M+ + D
Sbjct: 1540 TVLKEIDRFSTVLEKKEKHRTSPIDIKQKIDRISALKMDKFSKTGVLLCNLIEFMEKNYD 1599

Query: 253  ENSFTSRRNIVFIASTHIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFF 432
            EN F SRRNIV IASTH PRKVDP L+T NR  QFINIRMLL  QR+KEF ILLR K F 
Sbjct: 1600 ENLFLSRRNIVLIASTHDPRKVDPILLTLNRFSQFINIRMLLTPQRKKEFPILLRSKGFD 1659

Query: 433  LNKELFYLDDFGSRTIGYKARDLAGLVNE 519
            L KELFYLDDFGSRTIGY ARDL  LVNE
Sbjct: 1660 LKKELFYLDDFGSRTIGYMARDLVELVNE 1688


>ref|YP_003934173.1| hypothetical protein CedeC_p040 [Cedrus deodara]
            gi|307683248|dbj|BAJ19556.1| hypothetical protein
            (chloroplast) [Cedrus deodara]
          Length = 2113

 Score =  156 bits (395), Expect = 2e-36
 Identities = 95/194 (48%), Positives = 119/194 (61%), Gaps = 21/194 (10%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWF-FGKTFS--------------------QFHRTLTMAEIM 117
            LV+SLAAD Y+PLI+I+L  F +G+  +                    QF+ T  +A+ M
Sbjct: 1446 LVKSLAADSYVPLIRISLNKFLYGEYLNYSDTGNINSDFENLVQEKMHQFNLTFELAKRM 1505

Query: 118  SPCIIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIAS 297
            SPCIIWIPNIH L  N  T            + L  L++H+   DE    S RNI+ IA 
Sbjct: 1506 SPCIIWIPNIHELNVNDLTHSFLGLDLAY--SFLGLLVNHLSRDDEKD--SIRNILVIAP 1561

Query: 298  THIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRT 477
            THIP+KVDP L+ PNRL + INIRML++ QR++EF ILLR K F+L KELF  D+FGSRT
Sbjct: 1562 THIPQKVDPALIAPNRLDRSINIRMLVIPQRQREFPILLRSKGFYLEKELFCPDEFGSRT 1621

Query: 478  IGYKARDLAGLVNE 519
            IG  ARDLA L NE
Sbjct: 1622 IGSNARDLAALANE 1635


>gb|ACP51933.1| hypothetical chloroplast protein [Cedrus deodara]
          Length = 2100

 Score =  156 bits (395), Expect = 2e-36
 Identities = 95/194 (48%), Positives = 119/194 (61%), Gaps = 21/194 (10%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWF-FGKTFS--------------------QFHRTLTMAEIM 117
            LV+SLAAD Y+PLI+I+L  F +G+  +                    QF+ T  +A+ M
Sbjct: 1432 LVKSLAADSYVPLIRISLNKFLYGEYLNYSDTGNINSDFENLVQEKMHQFNLTFELAKRM 1491

Query: 118  SPCIIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIAS 297
            SPCIIWIPNIH L  N  T            + L  L++H+   DE    S RNI+ IA 
Sbjct: 1492 SPCIIWIPNIHELNVNDLTHSFLGLDLAY--SFLGLLVNHLSRDDEKD--SIRNILVIAP 1547

Query: 298  THIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRT 477
            THIP+KVDP L+ PNRL + INIRML++ QR++EF ILLR K F+L KELF  D+FGSRT
Sbjct: 1548 THIPQKVDPALIAPNRLDRSINIRMLVIPQRQREFPILLRSKGFYLEKELFCPDEFGSRT 1607

Query: 478  IGYKARDLAGLVNE 519
            IG  ARDLA L NE
Sbjct: 1608 IGSNARDLAALANE 1621


>gb|AEX98881.1| hypothetical chloroplast RF2 (chloroplast) [Ginkgo biloba]
          Length = 2422

 Score =  153 bits (387), Expect = 2e-35
 Identities = 94/192 (48%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+SLAAD Y+PLI+I+L+                      +   QF+ T  +A+ MSPC
Sbjct: 1709 LVKSLAADSYVPLIRISLKKLLYDKGEYSNFLDIRSMNDVMQKMHQFNLTFELAKRMSPC 1768

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RNI+ IASTHI
Sbjct: 1769 IIWIPNIHELNVNHLTHF-----------FLSLLVNHLSRDDEKYST--RNILVIASTHI 1815

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
             +KVDP  + PNRL + INIRML +SQR+KEFSILLR K F+L KEL   D+FGSRT G+
Sbjct: 1816 TKKVDPASIAPNRLDRSINIRMLPISQRQKEFSILLRSKGFYLEKELSCPDEFGSRTAGF 1875

Query: 487  KARDLAGLVNET 522
             ARDLA L NET
Sbjct: 1876 NARDLAALANET 1887


>gb|AEX98464.1| hypothetical chloroplast RF2 (chloroplast) [Ginkgo biloba]
          Length = 2422

 Score =  153 bits (387), Expect = 2e-35
 Identities = 94/192 (48%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+SLAAD Y+PLI+I+L+                      +   QF+ T  +A+ MSPC
Sbjct: 1709 LVKSLAADSYVPLIRISLKKLLYDKGEYSNFLDIRSMNDVMQKMHQFNLTFELAKRMSPC 1768

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RNI+ IASTHI
Sbjct: 1769 IIWIPNIHELNVNHLTHF-----------FLSLLVNHLSRDDEKYST--RNILVIASTHI 1815

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
             +KVDP  + PNRL + INIRML +SQR+KEFSILLR K F+L KEL   D+FGSRT G+
Sbjct: 1816 TKKVDPASIAPNRLDRSINIRMLPISQRQKEFSILLRSKGFYLEKELSCPDEFGSRTAGF 1875

Query: 487  KARDLAGLVNET 522
             ARDLA L NET
Sbjct: 1876 NARDLAALANET 1887


>dbj|BAL72635.1| hypothetical protein (chloroplast) [Ginkgo biloba]
          Length = 2179

 Score =  153 bits (387), Expect = 2e-35
 Identities = 94/192 (48%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+SLAAD Y+PLI+I+L+                      +   QF+ T  +A+ MSPC
Sbjct: 1466 LVKSLAADSYVPLIRISLKKLLYDKGEYSNFLDIRSMNDVMQKMHQFNLTFELAKRMSPC 1525

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RNI+ IASTHI
Sbjct: 1526 IIWIPNIHELNVNHLTHF-----------FLSLLVNHLSRDDEKYST--RNILVIASTHI 1572

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
             +KVDP  + PNRL + INIRML +SQR+KEFSILLR K F+L KEL   D+FGSRT G+
Sbjct: 1573 TKKVDPASIAPNRLDRSINIRMLPISQRQKEFSILLRSKGFYLEKELSCPDEFGSRTAGF 1632

Query: 487  KARDLAGLVNET 522
             ARDLA L NET
Sbjct: 1633 NARDLAALANET 1644


>ref|YP_005352751.1| ycf2 gene product (chloroplast) [Ginkgo biloba]
            gi|372862974|gb|AEX99049.1| hypothetical chloroplast RF2
            (chloroplast) [Ginkgo biloba]
          Length = 2422

 Score =  153 bits (387), Expect = 2e-35
 Identities = 94/192 (48%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+SLAAD Y+PLI+I+L+                      +   QF+ T  +A+ MSPC
Sbjct: 1709 LVKSLAADSYVPLIRISLKKLLYDKGEYSNFLDIRSMNDVMQKMHQFNLTFELAKRMSPC 1768

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RNI+ IASTHI
Sbjct: 1769 IIWIPNIHELNVNHLTHF-----------FLSLLVNHLSRDDEKYST--RNILVIASTHI 1815

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
             +KVDP  + PNRL + INIRML +SQR+KEFSILLR K F+L KEL   D+FGSRT G+
Sbjct: 1816 TKKVDPASIAPNRLDRSINIRMLPISQRQKEFSILLRSKGFYLEKELSCPDEFGSRTAGF 1875

Query: 487  KARDLAGLVNET 522
             ARDLA L NET
Sbjct: 1876 NARDLAALANET 1887


>gb|ABU85394.1| hypothetical protein RF2 [Ginkgo biloba]
          Length = 2422

 Score =  153 bits (387), Expect = 2e-35
 Identities = 94/192 (48%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+SLAAD Y+PLI+I+L+                      +   QF+ T  +A+ MSPC
Sbjct: 1709 LVKSLAADSYVPLIRISLKKLLYDKGEYSNFLDIRSMNDVMQKMHQFNLTFELAKRMSPC 1768

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RNI+ IASTHI
Sbjct: 1769 IIWIPNIHELNVNHLTHF-----------FLSLLVNHLSRDDEKYST--RNILVIASTHI 1815

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
             +KVDP  + PNRL + INIRML +SQR+KEFSILLR K F+L KEL   D+FGSRT G+
Sbjct: 1816 TKKVDPASIAPNRLDRSINIRMLPISQRQKEFSILLRSKGFYLEKELSCPDEFGSRTAGF 1875

Query: 487  KARDLAGLVNET 522
             ARDLA L NET
Sbjct: 1876 NARDLAALANET 1887


>gb|AEQ37157.1| hypothetical chloroplast RF2 (chloroplast) [Ginkgo biloba]
          Length = 2422

 Score =  152 bits (384), Expect = 4e-35
 Identities = 94/192 (48%), Positives = 115/192 (59%), Gaps = 18/192 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+SLAAD Y+PLI+I+L+                      +   QF+ T  +A+ MSPC
Sbjct: 1709 LVKSLAADSYVPLIRISLKKLLYDKGEYSNFLDIRSMNDVMQKMHQFNLTFELAKRMSPC 1768

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RNI+ IASTHI
Sbjct: 1769 IIWIPNIHELNVNHLTHF-----------FLSLLVNHLSRDDEKYST--RNILVIASTHI 1815

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
             +KVDP  + PNRL + INIRML +SQR+KEFSILLR K F+L KEL   D+FGSRT G+
Sbjct: 1816 TKKVDPASIAPNRLDRSINIRMLPISQRQKEFSILLRSKGFYLVKELSCPDEFGSRTAGF 1875

Query: 487  KARDLAGLVNET 522
             ARDLA L NET
Sbjct: 1876 NARDLAALANET 1887


>gb|ACP51437.1| hypothetical chloroplast protein [Abies firma]
          Length = 2077

 Score =  152 bits (384), Expect = 4e-35
 Identities = 93/194 (47%), Positives = 117/194 (60%), Gaps = 21/194 (10%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINL-EWFFGKTFS--------------------QFHRTLTMAEIM 117
            L +SLAAD Y+PLIKI+L +  +G+  +                    QF+ TL +A+ M
Sbjct: 1398 LAKSLAADSYVPLIKISLNKLLYGEYLNYPGTGSIMTDFENKVKEKMQQFNLTLELAKRM 1457

Query: 118  SPCIIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIAS 297
            SPCIIWIPNIH L  N                 L  L++H+   DE    S RNI+FIAS
Sbjct: 1458 SPCIIWIPNIHQLHFNDLNQSFFGLNLTDF--FLGLLVNHLSRDDEKD--SIRNILFIAS 1513

Query: 298  THIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRT 477
            THIP+KVDP L+ PNRL + INIRML++ QR++EF ILLR K F+  K+L   D+FGSRT
Sbjct: 1514 THIPKKVDPALIAPNRLDRSINIRMLVIPQRQREFPILLRSKGFYSEKQLSCPDEFGSRT 1573

Query: 478  IGYKARDLAGLVNE 519
            IG  ARDLA L NE
Sbjct: 1574 IGSNARDLAALANE 1587


>ref|YP_004891468.1| hypothetical protein Pssivw_p073 (chloroplast) [Pseudotsuga sinensis
            var. wilsoniana] gi|347977686|dbj|BAK86641.1|
            hypothetical protein [Pseudotsuga sinensis var.
            wilsoniana]
          Length = 2087

 Score =  150 bits (378), Expect = 2e-34
 Identities = 93/194 (47%), Positives = 116/194 (59%), Gaps = 21/194 (10%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINL---------------------EWFFGKTFSQFHRTLTMAEIM 117
            LV+S+AAD Y+PLIKI+L                     E    +   QFH T  +A+ M
Sbjct: 1419 LVKSIAADSYVPLIKISLDKLVYGPYLNYPDTGSINIDFENLVTEKMQQFHLTFELAKRM 1478

Query: 118  SPCIIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIAS 297
            SPCIIWIPNIH L  N  T            + L  L+ H+ S D++S    RNI+ IA 
Sbjct: 1479 SPCIIWIPNIHELNVNDLT--LSLLGFDLTDSFLGLLVHHL-SRDKDSL---RNILVIAP 1532

Query: 298  THIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRT 477
            THIP+KVDP L+ PNRL + INIRML++ QR++EF ILLR K F+  KEL   ++F SRT
Sbjct: 1533 THIPQKVDPALIAPNRLDRSINIRMLVIPQRQREFPILLRSKGFYSEKELSCSNEFASRT 1592

Query: 478  IGYKARDLAGLVNE 519
            IGY ARDLA LVNE
Sbjct: 1593 IGYDARDLAALVNE 1606


>gb|AET46427.1| hypothetical chloroplast protein, partial (chloroplast) [Pseudotsuga
            menziesii var. menziesii]
          Length = 2015

 Score =  148 bits (374), Expect = 6e-34
 Identities = 92/194 (47%), Positives = 116/194 (59%), Gaps = 21/194 (10%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINL---------------------EWFFGKTFSQFHRTLTMAEIM 117
            LV+S+AAD Y+PLIKI+L                     E    +   QFH T  +A+ M
Sbjct: 1347 LVKSIAADSYVPLIKISLDKLVYGPYLNYPDTGSINIDFENLVTEKMQQFHLTFELAKRM 1406

Query: 118  SPCIIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIAS 297
            SPCIIWIPNIH L  N  T            + L  L+ H+ S D++S    RNI+ IA 
Sbjct: 1407 SPCIIWIPNIHELNVNDLT--LSLLGFDLTDSFLGLLVHHL-SRDKDSL---RNILVIAP 1460

Query: 298  THIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRT 477
            THIP+KVDP L+ PNRL + INIRML++ QR++EF ILLR K F+  K+L   ++F SRT
Sbjct: 1461 THIPQKVDPALIAPNRLDRSINIRMLVIPQRQREFPILLRSKGFYSEKKLSCSNEFASRT 1520

Query: 478  IGYKARDLAGLVNE 519
            IGY ARDLA LVNE
Sbjct: 1521 IGYDARDLAALVNE 1534


>ref|YP_008082869.1| hypothetical protein PACH01_0118 (chloroplast) [Picea abies]
            gi|502524903|emb|CCW23154.1| hypothetical protein
            PACH01_0118 (chloroplast) [Picea abies]
          Length = 2126

 Score =  147 bits (370), Expect = 2e-33
 Identities = 92/194 (47%), Positives = 114/194 (58%), Gaps = 21/194 (10%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWF-FGKTFS--------------------QFHRTLTMAEIM 117
            LV+S+AAD Y+PLIKI+L  F +GK  +                    QFH TL +A+ M
Sbjct: 1430 LVKSIAADSYVPLIKISLNKFLYGKYLNYPDSRIIQTEFFNLAIDKMRQFHLTLELAKRM 1489

Query: 118  SPCIIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIAS 297
            SPCIIWIPNIH L  N  T            + L  L+ H+    +    S RNI+ IA 
Sbjct: 1490 SPCIIWIPNIHELNVNDLTHAFLDFDLSD--SFLGLLVSHLSRDYDRD--SIRNILVIAP 1545

Query: 298  THIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRT 477
            THIP+KVDP L+ PNRL + INIRML++ QR++EF ILL  K F+  KEL   D+FGSRT
Sbjct: 1546 THIPQKVDPALIAPNRLDRSINIRMLVIPQRQREFPILLCSKGFYSEKELSCSDEFGSRT 1605

Query: 478  IGYKARDLAGLVNE 519
            I   ARDLA L NE
Sbjct: 1606 ISSDARDLAALANE 1619


>ref|YP_004891689.1| hypothetical protein PimoC_p002 (chloroplast) [Picea morrisonicola]
            gi|347977470|dbj|BAK86427.1| hypothetical protein
            (chloroplast) [Picea morrisonicola]
          Length = 2126

 Score =  147 bits (370), Expect = 2e-33
 Identities = 92/194 (47%), Positives = 114/194 (58%), Gaps = 21/194 (10%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWF-FGKTFS--------------------QFHRTLTMAEIM 117
            LV+S+AAD Y+PLIKI+L  F +GK  +                    QFH TL +A+ M
Sbjct: 1430 LVKSIAADSYVPLIKISLNKFLYGKYLNYPDSRIIQTEFFNLAIDKMRQFHLTLELAKRM 1489

Query: 118  SPCIIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIAS 297
            SPCIIWIPNIH L  N  T            + L  L+ H+    +    S RNI+ IA 
Sbjct: 1490 SPCIIWIPNIHELNVNDLTHAFLDFDLSD--SFLGLLVSHLSRDYDRD--SIRNILVIAP 1545

Query: 298  THIPRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRT 477
            THIP+KVDP L+ PNRL + INIRML++ QR++EF ILL  K F+  KEL   D+FGSRT
Sbjct: 1546 THIPQKVDPALIAPNRLDRSINIRMLVIPQRQREFPILLCSKGFYSEKELSCSDEFGSRT 1605

Query: 478  IGYKARDLAGLVNE 519
            I   ARDLA L NE
Sbjct: 1606 ISSDARDLAALANE 1619


>gb|ABU85252.1| hypothetical protein RF2 [Cycas micronesica]
          Length = 2430

 Score =  143 bits (360), Expect = 3e-32
 Identities = 88/191 (46%), Positives = 110/191 (57%), Gaps = 18/191 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+ LAAD Y+PL++I+L  F                    +   QF+ T  +A+ MSPC
Sbjct: 1702 LVKGLAADSYVPLVRISLNKFLYDKGEYSNFLDIRSMNNVVQKMHQFNLTFELAKRMSPC 1761

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RN++ IASTHI
Sbjct: 1762 IIWIPNIHELNVNYLTHF-----------FLGLLVNHLSRDDEKDST--RNLLVIASTHI 1808

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
            P+KVDP  + PNRL + IN+RML + QR+KEF+ILLR K F   KEL    +FGSRTIG 
Sbjct: 1809 PKKVDPAPIAPNRLDRSINVRMLPIPQRQKEFTILLRSKGFDSEKELSCPKEFGSRTIGS 1868

Query: 487  KARDLAGLVNE 519
             ARDLA L NE
Sbjct: 1869 NARDLAALANE 1879


>ref|YP_007474610.1| hypothetical chloroplast RF2 (chloroplast) [Cycas revoluta]
            gi|452849004|ref|YP_007474683.1| hypothetical chloroplast
            RF2 (chloroplast) [Cycas revoluta]
            gi|372863087|gb|AEX99160.1| hypothetical chloroplast RF2
            (chloroplast) [Cycas revoluta]
            gi|372863159|gb|AEX99232.1| hypothetical chloroplast RF2
            (chloroplast) [Cycas revoluta]
          Length = 2434

 Score =  142 bits (358), Expect = 5e-32
 Identities = 88/191 (46%), Positives = 109/191 (57%), Gaps = 18/191 (9%)
 Frame = +1

Query: 1    LVQSLAADFYIPLIKINLEWFFG------------------KTFSQFHRTLTMAEIMSPC 126
            LV+ LAAD Y+PL++I+L  F                    +   QF+ T  +A+ MSPC
Sbjct: 1702 LVKGLAADSYVPLVRISLNKFLYDKGEYSNFLDIRSMNNVVQKMHQFNLTFELAKRMSPC 1761

Query: 127  IIWIPNIHVLERNTRTSXXXXXXXXXXXALLHRLLDHMDSCDENSFTSRRNIVFIASTHI 306
            IIWIPNIH L  N  T              L  L++H+   DE   T  RN++ IASTHI
Sbjct: 1762 IIWIPNIHELNVNYLTHF-----------FLGLLVNHLSRDDEKDST--RNLLVIASTHI 1808

Query: 307  PRKVDPNLMTPNRLGQFINIRMLLVSQREKEFSILLRRKRFFLNKELFYLDDFGSRTIGY 486
            P+KVDP  + PNRL + IN+RML + QR+KEF ILLR K F   KEL    +FGSRTIG 
Sbjct: 1809 PKKVDPAPIAPNRLDRSINVRMLPIPQRQKEFPILLRSKGFDSEKELSCPKEFGSRTIGS 1868

Query: 487  KARDLAGLVNE 519
             ARDLA L NE
Sbjct: 1869 NARDLAALANE 1879