BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00029613
         (745 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517017.1| conserved hypothetical protein [Ricinus comm...   121   3e-25
ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Popu...   120   5e-25
gb|EPS65975.1| hypothetical protein M569_08800, partial [Genlise...   119   8e-25
gb|EOY05903.1| CRM family member 3A isoform 4 [Theobroma cacao]       118   2e-24
gb|EOY05902.1| CRM family member 3A isoform 3 [Theobroma cacao]       118   2e-24
gb|EOY05901.1| CRM family member 3A isoform 2 [Theobroma cacao]       118   2e-24
gb|EOY05900.1| CRM family member 3A isoform 1 [Theobroma cacao]       118   2e-24
ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron sp...   118   2e-24
gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]       117   3e-24
ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana] gi|2...   117   3e-24
ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron sp...   117   4e-24
gb|ESW16066.1| hypothetical protein PHAVU_007G126200g [Phaseolus...   117   4e-24
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...   117   5e-24
ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citr...   117   5e-24
ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron sp...   116   7e-24
ref|XP_006406097.1| hypothetical protein EUTSA_v100202861mg, par...   115   2e-23
ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group] g...   114   3e-23
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]   114   4e-23
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...   113   6e-23
ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron sp...   113   8e-23

>ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
           gi|223543652|gb|EEF45180.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 773

 Score =  121 bits (303), Expect = 3e-25
 Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L    K  ++V   G        IH  W+ SE+VRVK+       +R +
Sbjct: 105 LPESELRRLRNLTYQIKSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRM 164

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y    ++ +    +R    +    T+  I    
Sbjct: 165 HEILERKTGGLVIWRSGTSVSLYRGVSYEDPSVQLNKQILKRNELSNNSLSTATGIIRSP 224

Query: 456 MARMITNEVSFPSQGIGHFPYTALLVGE------------YQNKTEKILDGLGPRYTAWS 599
                +++++ P     H    +   GE            Y+++ +K+L+GLGPRYT W+
Sbjct: 225 SKSAASSDLNMP-----HLNSDSTAEGEEKKEIEMETEVKYEDEVDKLLEGLGPRYTDWA 279

Query: 600 RPGPLPVDADLLPLILADYQPPYRLLPYGI 689
              PLPVDAD+LP I+  YQPP+R+LPYG+
Sbjct: 280 GLDPLPVDADMLPGIIPGYQPPFRILPYGV 309


>ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Populus trichocarpa]
           gi|222864769|gb|EEF01900.1| hypothetical protein
           POPTR_0010s08770g [Populus trichocarpa]
          Length = 894

 Score =  120 bits (301), Expect = 5e-25
 Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L  GTK   +V   G        IH  W+ SE+ RVK+       ++ +
Sbjct: 212 LPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRM 271

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+  A V LYRG++Y    L+      ++          +  IT  +
Sbjct: 272 HEILENKTGGLVIWRSGATVSLYRGVSYEDPALKWKKRIFKKKETSSNSLPAATSITIGS 331

Query: 456 MARMIT-NEVSFPSQGIGHFPYTALLVG-------------EYQNKTEKILDGLGPRYTA 593
            ++    NE+  P       P T + V              +Y+++ +K+LDGLGPRYT 
Sbjct: 332 QSKNSPDNEIHAPR------PKTEINVEAANQKETKTQTDVKYEDEVDKLLDGLGPRYTD 385

Query: 594 WSRPGPLPVDADLLPLILADYQPPYRLLPYGI 689
           W    PLPVDAD+LP ++  YQPP+R+LPYG+
Sbjct: 386 WPGLDPLPVDADMLPGVIPGYQPPFRILPYGV 417


>gb|EPS65975.1| hypothetical protein M569_08800, partial [Genlisea aurea]
          Length = 761

 Score =  119 bits (299), Expect = 8e-25
 Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 7/208 (3%)
 Frame = +3

Query: 87  ENYLPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKL 266
           E+ LP     R+  L   TK   ++   G      + IH  W+ +EVVR+K+       +
Sbjct: 223 ESTLPESEVTRLRNLALRTKNKTRIKGAGVTQEIVEAIHEKWKTAEVVRLKIEGPSALNM 282

Query: 267 RPLLSVLEEKSGGIVVWKMSAFVGLYRGLNYN--ARQLR---ASNHTTRRVSCQDTCRVT 431
           + +  +LE K+GG+VVW+  + V LYRG+ +   +R+L      N+   R S +   R+T
Sbjct: 283 KRMHEILERKTGGLVVWRSGSSVALYRGVKFEDTSRKLNKRITGNNGAPRESYRSLERIT 342

Query: 432 --SREITARNMARMITNEVSFPSQGIGHFPYTALLVGEYQNKTEKILDGLGPRYTAWSRP 605
             S E++     + + ++ SF          T   V +Y+++ EK+L+ LGPRY  W   
Sbjct: 343 QGSSELSDDG-GKPMEDDASFNGDPDRKIIQTTSYV-KYEDEVEKLLESLGPRYEDWPGD 400

Query: 606 GPLPVDADLLPLILADYQPPYRLLPYGI 689
           GPLPVDADLLP  +  YQPP+RLLPYG+
Sbjct: 401 GPLPVDADLLPGAIPGYQPPFRLLPYGV 428


>gb|EOY05903.1| CRM family member 3A isoform 4 [Theobroma cacao]
          Length = 645

 Score =  118 bits (296), Expect = 2e-24
 Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 6/204 (2%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L   TK  +++   G        IH  W+  E+VR+K+       ++ +
Sbjct: 237 LPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVRLKIEGAPALNMKRM 296

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y    +  S    +R     T  + S     ++
Sbjct: 297 HEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF-TYALPSVSDKTKD 355

Query: 456 MARM------ITNEVSFPSQGIGHFPYTALLVGEYQNKTEKILDGLGPRYTAWSRPGPLP 617
           ++ +      ++ + +  +   G+    +L    Y+++ +K+L+GLGPRYT W    PLP
Sbjct: 356 LSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLGPRYTDWPGCNPLP 415

Query: 618 VDADLLPLILADYQPPYRLLPYGI 689
           VDADLLP I+A YQPP+R+LPYG+
Sbjct: 416 VDADLLPGIVAGYQPPFRVLPYGV 439


>gb|EOY05902.1| CRM family member 3A isoform 3 [Theobroma cacao]
          Length = 856

 Score =  118 bits (296), Expect = 2e-24
 Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 6/204 (2%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L   TK  +++   G        IH  W+  E+VR+K+       ++ +
Sbjct: 237 LPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVRLKIEGAPALNMKRM 296

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y    +  S    +R     T  + S     ++
Sbjct: 297 HEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF-TYALPSVSDKTKD 355

Query: 456 MARM------ITNEVSFPSQGIGHFPYTALLVGEYQNKTEKILDGLGPRYTAWSRPGPLP 617
           ++ +      ++ + +  +   G+    +L    Y+++ +K+L+GLGPRYT W    PLP
Sbjct: 356 LSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLGPRYTDWPGCNPLP 415

Query: 618 VDADLLPLILADYQPPYRLLPYGI 689
           VDADLLP I+A YQPP+R+LPYG+
Sbjct: 416 VDADLLPGIVAGYQPPFRVLPYGV 439


>gb|EOY05901.1| CRM family member 3A isoform 2 [Theobroma cacao]
          Length = 685

 Score =  118 bits (296), Expect = 2e-24
 Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 6/204 (2%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L   TK  +++   G        IH  W+  E+VR+K+       ++ +
Sbjct: 237 LPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVRLKIEGAPALNMKRM 296

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y    +  S    +R     T  + S     ++
Sbjct: 297 HEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF-TYALPSVSDKTKD 355

Query: 456 MARM------ITNEVSFPSQGIGHFPYTALLVGEYQNKTEKILDGLGPRYTAWSRPGPLP 617
           ++ +      ++ + +  +   G+    +L    Y+++ +K+L+GLGPRYT W    PLP
Sbjct: 356 LSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLGPRYTDWPGCNPLP 415

Query: 618 VDADLLPLILADYQPPYRLLPYGI 689
           VDADLLP I+A YQPP+R+LPYG+
Sbjct: 416 VDADLLPGIVAGYQPPFRVLPYGV 439


>gb|EOY05900.1| CRM family member 3A isoform 1 [Theobroma cacao]
          Length = 876

 Score =  118 bits (296), Expect = 2e-24
 Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 6/204 (2%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L   TK  +++   G        IH  W+  E+VR+K+       ++ +
Sbjct: 237 LPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVRLKIEGAPALNMKRM 296

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y    +  S    +R     T  + S     ++
Sbjct: 297 HEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKRIYKRNETF-TYALPSVSDKTKD 355

Query: 456 MARM------ITNEVSFPSQGIGHFPYTALLVGEYQNKTEKILDGLGPRYTAWSRPGPLP 617
           ++ +      ++ + +  +   G+    +L    Y+++ +K+L+GLGPRYT W    PLP
Sbjct: 356 LSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLGPRYTDWPGCNPLP 415

Query: 618 VDADLLPLILADYQPPYRLLPYGI 689
           VDADLLP I+A YQPP+R+LPYG+
Sbjct: 416 VDADLLPGIVAGYQPPFRVLPYGV 439


>ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Solanum lycopersicum]
          Length = 883

 Score =  118 bits (296), Expect = 2e-24
 Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 5/203 (2%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R++ L    K   ++   G      + I   W+ SEVVR+K+       ++ +
Sbjct: 252 LPASELRRLTNLALRIKNKSRITGAGVTQQVVETIREKWKTSEVVRLKVEGAPALNMKRM 311

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y       S    +R+  +D  R  +  I    
Sbjct: 312 HEILERKTGGLVIWRSGTSVALYRGVSYET----PSERMKKRIMRRDEIRQKNSPIVDGE 367

Query: 456 MARMITNEV-SFPSQGIGHFPYTALLVGE----YQNKTEKILDGLGPRYTAWSRPGPLPV 620
             +   N+V S     +        +  +    Y+++ +K+LDGLGPRYT W   GPLPV
Sbjct: 368 SNQNSRNDVDSLREDSVDTSEENKSIDRQSEVNYEDEVDKLLDGLGPRYTDWPGSGPLPV 427

Query: 621 DADLLPLILADYQPPYRLLPYGI 689
           DADLLP I+  YQPP+R+LPYG+
Sbjct: 428 DADLLPGIVPGYQPPFRILPYGV 450


>gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
          Length = 1020

 Score =  117 bits (294), Expect = 3e-24
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 11/209 (5%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LPP    R+  +G    K +K+ K G  +     IH  W+ +EVV++         ++  
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYN----ARQLRASNHTTRRVSCQDTCRVTSRE- 440
             VLE K+GG+V+W+  + + LYRG+NY           ++      S  D   V SRE 
Sbjct: 226 HDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREK 285

Query: 441 -ITARNMARMITNEVSFP--SQGIGHFPYTAL-LVGEYQ--NKTEKILDGLGPRYTAWSR 602
              A + A  ITN++  P  +QG+G        L GE Q   + +++L+GLGPR+T W  
Sbjct: 286 QSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWA 345

Query: 603 PGPLPVDADLLPLILADYQPPYRLLPYGI 689
             PLPVD DLLP ++ DY+ P+RLLPYG+
Sbjct: 346 YDPLPVDGDLLPAVVPDYRRPFRLLPYGV 374


>ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
           gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis
           thaliana] gi|37202002|gb|AAQ89616.1| At3g01370
           [Arabidopsis thaliana] gi|332640136|gb|AEE73657.1| CRM
           family member 2 [Arabidopsis thaliana]
          Length = 1011

 Score =  117 bits (294), Expect = 3e-24
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 11/209 (5%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LPP    R+  +G    K +K+ K G  +     IH  W+ +EVV++         ++  
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYN----ARQLRASNHTTRRVSCQDTCRVTSRE- 440
             VLE K+GG+V+W+  + + LYRG+NY           ++      S  D   V SRE 
Sbjct: 226 HDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREK 285

Query: 441 -ITARNMARMITNEVSFP--SQGIGHFPYTAL-LVGEYQ--NKTEKILDGLGPRYTAWSR 602
              A + A  ITN++  P  +QG+G        L GE Q   + +++L+GLGPR+T W  
Sbjct: 286 QSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWA 345

Query: 603 PGPLPVDADLLPLILADYQPPYRLLPYGI 689
             PLPVD DLLP ++ DY+ P+RLLPYG+
Sbjct: 346 YDPLPVDGDLLPAVVPDYRRPFRLLPYGV 374


>ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Solanum tuberosum]
          Length = 883

 Score =  117 bits (293), Expect = 4e-24
 Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 5/203 (2%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R++ L    K   ++   G      + I   W+ SEVVR+K+       ++ +
Sbjct: 252 LPASELRRLTNLALRIKNKSRITGAGVTQQVVETIREKWKTSEVVRLKVEGAPALNMKRM 311

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y       S    +R+  +D  R  +  I    
Sbjct: 312 HEILERKTGGLVIWRSGTSVALYRGVSYET----PSERMKKRIMRRDEIRHKNSPIVDGE 367

Query: 456 MARMITNEV-SFPSQGIGHFPYTALLVGE----YQNKTEKILDGLGPRYTAWSRPGPLPV 620
             +   N+V S     +        +  +    Y+++ +K+LDGLGPRYT W   GPLPV
Sbjct: 368 SNQNPRNDVDSLREDSVDTSEENKNIDRQSEVNYEDEVDKLLDGLGPRYTDWPGSGPLPV 427

Query: 621 DADLLPLILADYQPPYRLLPYGI 689
           DADLLP I+  YQPP+R+LPYG+
Sbjct: 428 DADLLPGIVPGYQPPFRILPYGV 450


>gb|ESW16066.1| hypothetical protein PHAVU_007G126200g [Phaseolus vulgaris]
          Length = 827

 Score =  117 bits (293), Expect = 4e-24
 Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 7/205 (3%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP    +R+ RL    K   ++ + G        IH  W+  E+VR+K   +    +R +
Sbjct: 203 LPESELKRLLRLTFEKKHKTRIGRSGVTQAVVDKIHERWKTVEIVRLKFEGEAALNMRRM 262

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREITARN 455
             +LE K+GG+V+W+    V LYRG++Y    ++ +N   R+         T    + RN
Sbjct: 263 HEILERKTGGLVIWRSGNSVSLYRGVSYEVPSIQQNNQMYRKSENSSKLLPTPSYNSVRN 322

Query: 456 MARMITNEVSFPSQGIGHFPYTA-------LLVGEYQNKTEKILDGLGPRYTAWSRPGPL 614
              + +N  S  S+ + +   T        L    Y+ + +K+LD LGPRYT WS   PL
Sbjct: 323 SPTIASN--SGASEPLANLESTNDQKEGDYLPKVSYELEVDKLLDDLGPRYTDWSGCDPL 380

Query: 615 PVDADLLPLILADYQPPYRLLPYGI 689
           PVDAD+LP  +  YQPP+R+LP+G+
Sbjct: 381 PVDADMLPATVPGYQPPFRVLPFGV 405


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
           gi|557521988|gb|ESR33355.1| hypothetical protein
           CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score =  117 bits (292), Expect = 5e-24
 Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
 Frame = +3

Query: 57  RLVVRTKKDR----ENYLPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSE 224
           R +V+ +  R    E  LP     R+  L   TK   ++   G       +IH  W+ SE
Sbjct: 235 RWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSE 294

Query: 225 VVRVKMPFKKDEKLRPLLSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRR- 401
           +VR+K+       ++ +  +LE K+GG+V+W+    V LYRG++Y    ++ +    +R 
Sbjct: 295 IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRN 354

Query: 402 -VSCQDTCRVTSREITARNMARMITNEVS------------FPSQGIGHFPYTALLVG-- 536
            +      + T ++I       M  N +S            F S    H     L     
Sbjct: 355 ELPASSVSQATDKQI--HKQISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQVNLETASE 412

Query: 537 ----------EYQNKTEKILDGLGPRYTAWSRPGPLPVDADLLPLILADYQPPYRLLPYG 686
                     +Y+++ EK+LDGLGPRYT W    PLPVDAD+LP I+  YQPP+R+LPYG
Sbjct: 413 EQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYG 472

Query: 687 I 689
           +
Sbjct: 473 V 473


>ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
           gi|557521987|gb|ESR33354.1| hypothetical protein
           CICLE_v10004262mg [Citrus clementina]
          Length = 860

 Score =  117 bits (292), Expect = 5e-24
 Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
 Frame = +3

Query: 57  RLVVRTKKDR----ENYLPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSE 224
           R +V+ +  R    E  LP     R+  L   TK   ++   G       +IH  W+ SE
Sbjct: 235 RWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSE 294

Query: 225 VVRVKMPFKKDEKLRPLLSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRR- 401
           +VR+K+       ++ +  +LE K+GG+V+W+    V LYRG++Y    ++ +    +R 
Sbjct: 295 IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRN 354

Query: 402 -VSCQDTCRVTSREITARNMARMITNEVS------------FPSQGIGHFPYTALLVG-- 536
            +      + T ++I       M  N +S            F S    H     L     
Sbjct: 355 ELPASSVSQATDKQI--HKQISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQVNLETASE 412

Query: 537 ----------EYQNKTEKILDGLGPRYTAWSRPGPLPVDADLLPLILADYQPPYRLLPYG 686
                     +Y+++ EK+LDGLGPRYT W    PLPVDAD+LP I+  YQPP+R+LPYG
Sbjct: 413 EQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYG 472

Query: 687 I 689
           +
Sbjct: 473 V 473


>ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Citrus sinensis]
          Length = 933

 Score =  116 bits (291), Expect = 7e-24
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 24/222 (10%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L   TK   ++   G       +IH  W+ SE+VR+K+       ++ +
Sbjct: 251 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 310

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRR--VSCQDTCRVTSREI-- 443
             +LE K+GG+V+W+    V LYRG++Y    ++ +    +R  +      + T ++I  
Sbjct: 311 HEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHK 370

Query: 444 ----TARNMARMITNEVSFPSQGIGHFPYTALLVG----------------EYQNKTEKI 563
               +  +++         PS    +    A  V                 +Y+++ EK+
Sbjct: 371 QISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLETASEEQETDFVREVKYEDEVEKL 430

Query: 564 LDGLGPRYTAWSRPGPLPVDADLLPLILADYQPPYRLLPYGI 689
           LDGLGPRYT W    PLPVDAD+LP I+  YQPP+R+LPYG+
Sbjct: 431 LDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGV 472


>ref|XP_006406097.1| hypothetical protein EUTSA_v100202861mg, partial [Eutrema
           salsugineum] gi|557107243|gb|ESQ47550.1| hypothetical
           protein EUTSA_v100202861mg, partial [Eutrema
           salsugineum]
          Length = 597

 Score =  115 bits (287), Expect = 2e-23
 Identities = 62/201 (30%), Positives = 105/201 (52%)
 Frame = +3

Query: 87  ENYLPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKL 266
           E  LP     R+  L   T   +K+   G N +    I   W+ SE+VR+K+       +
Sbjct: 13  EMTLPEPELRRLRNLTFRTTSKMKIRGAGVNQVAVDSIKEKWKSSEIVRLKIEGASALNM 72

Query: 267 RPLLSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREIT 446
           R +  +LE K+GG+V+W+    + LYRG++Y     + +N      S       T+  + 
Sbjct: 73  RKMHEILERKTGGLVIWRSGTSISLYRGVSYELPAGKWNNQKREETSPSSLPETTT--MV 130

Query: 447 ARNMARMITNEVSFPSQGIGHFPYTALLVGEYQNKTEKILDGLGPRYTAWSRPGPLPVDA 626
           A N  ++  +++   +        T+    EY+++ +++LDGLGPR+  W+   PLP+DA
Sbjct: 131 ANNDEQVHLSQLDQETTSGEKKDQTSQPEVEYEDEIDELLDGLGPRFMDWTGDNPLPIDA 190

Query: 627 DLLPLILADYQPPYRLLPYGI 689
           DLLP  +  Y+PP+R+LPYG+
Sbjct: 191 DLLPDAIPGYEPPFRVLPYGV 211


>ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
           gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa
           Japonica Group] gi|50726191|dbj|BAD33710.1| putative
           CRS1 [Oryza sativa Japonica Group]
           gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa
           Japonica Group] gi|125591023|gb|EAZ31373.1| hypothetical
           protein OsJ_15500 [Oryza sativa Japonica Group]
          Length = 947

 Score =  114 bits (285), Expect = 3e-23
 Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 5/204 (2%)
 Frame = +3

Query: 87  ENYLPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKL 266
           E  +P     R+  +    K+ ++V   G   L  + IH  W+  EVV+++        +
Sbjct: 338 ERTIPEHELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNM 397

Query: 267 RPLLSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRASNHTTRRVSCQDTCRVTSREIT 446
           +    +LEE++GGIV+W+    V LYRG+NYN R +++   TT          V   +  
Sbjct: 398 KRTHDILEERTGGIVIWRSGRSVVLYRGMNYNLRCVQSYTQTT---------EVNFDKRV 448

Query: 447 ARNMARMITNEVSFPSQGIGHFPYTALLVGEYQNKTE-----KILDGLGPRYTAWSRPGP 611
           + N    I  E  F   G      +A +V   +  TE       LD LGPRY  WS  GP
Sbjct: 449 SSNSVEPIHVEHKFQKSGADGLNRSAYIVNSSEKPTETFDIDSFLDQLGPRYKDWSGRGP 508

Query: 612 LPVDADLLPLILADYQPPYRLLPY 683
           +PVDADLLP ++  Y+ P+RLLPY
Sbjct: 509 IPVDADLLPGVVPGYKTPFRLLPY 532


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score =  114 bits (284), Expect = 4e-23
 Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 18/239 (7%)
 Frame = +3

Query: 27  PYQFP--DGSSPRLVVRTKKDRENYLPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMI 200
           P++ P  +  S R+  RT    E  LP     R+  L   TK   K+   G       MI
Sbjct: 196 PWERPKVEEGSVRIKSRTSL-AELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMI 254

Query: 201 HAGWQYSEVVRVKMPFKKDEKLRPLLSVLEEKSGGIVVWKMSAFVGLYRGLNYNARQLRA 380
              W+ SE+V++K        +R +  +LE K+GG+V+W+    V LYRG++Y       
Sbjct: 255 REKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPV--- 311

Query: 381 SNHTTRRVSCQDTCRVTSREITARNMARMITNEVSFPSQGIG-----HFPYTALLVGE-- 539
                +RV  ++    +S      N   + +N+ S  +  +G     H     L + +  
Sbjct: 312 --QLNKRVYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLXITDGE 369

Query: 540 ---------YQNKTEKILDGLGPRYTAWSRPGPLPVDADLLPLILADYQPPYRLLPYGI 689
                    Y+++ +K+LDGLGPRYT W    PLP+DADLLP  +  YQPP+R+LPYG+
Sbjct: 370 NKDTESEVKYEDEIDKLLDGLGPRYTDWPXCDPLPIDADLLPGKIHGYQPPFRILPYGV 428


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic [Vitis vinifera]
           gi|297737163|emb|CBI26364.3| unnamed protein product
           [Vitis vinifera]
          Length = 902

 Score =  113 bits (283), Expect = 6e-23
 Identities = 79/235 (33%), Positives = 115/235 (48%), Gaps = 14/235 (5%)
 Frame = +3

Query: 27  PYQFP--DGSSPRLVVRTKKDRENYLPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMI 200
           P++ P  +  S R+  RT    E  LP     R+  L   TK   K+   G       MI
Sbjct: 196 PWERPKVEEGSVRIKSRTSL-AELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMI 254

Query: 201 HAGWQYSEVVRVKMPFKKDEKLRPLLSVLEEKSGGIVVWKMSAFVGLYRGLNYNAR-QLR 377
              W+ SE+V++K        +R +  +LE K+GG+V+W+    V LYRG++Y    QL 
Sbjct: 255 REKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLN 314

Query: 378 ASNHTTRRVSCQDTCRVT------SREITARNMARMITNEVSFPSQGI-----GHFPYTA 524
              +     S      +T      S   T+ N   + +N+    SQ       G    T 
Sbjct: 315 KRVYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDGENKDTE 374

Query: 525 LLVGEYQNKTEKILDGLGPRYTAWSRPGPLPVDADLLPLILADYQPPYRLLPYGI 689
             V +Y+++ +K+LDGLGPRYT W    PLP+DADLLP  +  YQPP+R+LPYG+
Sbjct: 375 SEV-KYEDEIDKLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGV 428


>ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cucumis sativus]
           gi|449504099|ref|XP_004162252.1| PREDICTED:
           chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cucumis sativus]
          Length = 874

 Score =  113 bits (282), Expect = 8e-23
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 7/205 (3%)
 Frame = +3

Query: 96  LPPKIFERVSRLGRGTKKVIKVPKCGFNDLFFKMIHAGWQYSEVVRVKMPFKKDEKLRPL 275
           LP     R+  L    +  +K+   G       +IH  W+ SE+VR+K+       ++ +
Sbjct: 237 LPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRM 296

Query: 276 LSVLEEKSGGIVVWKMSAFVGLYRGLNYNA-------RQLRASNHTTRRVSCQDTCRVTS 434
             +LE K+GG+V+W+    + LYRG++Y         +++   N  T       +    S
Sbjct: 297 HEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNEITALPKTGASTIAPS 356

Query: 435 REITARNMARMITNEVSFPSQGIGHFPYTALLVGEYQNKTEKILDGLGPRYTAWSRPGPL 614
              + RN+  +         +G         +   Y+++  K+LDGLGPRYT W    PL
Sbjct: 357 ESSSHRNVYALQQKRAETSIEGEHCSEQLTKVQVNYEDEVNKLLDGLGPRYTDWPGLDPL 416

Query: 615 PVDADLLPLILADYQPPYRLLPYGI 689
           PVDAD+LP ++ DY+PP+R+LPYG+
Sbjct: 417 PVDADMLPGVVPDYEPPFRILPYGV 441