BLASTX nr result
ID: Ephedra27_contig00029607
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00029607
(379 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 101 1e-19
ref|XP_006857931.1| hypothetical protein AMTR_s00069p00153410 [A... 93 4e-17
ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutr... 91 1e-16
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 91 2e-16
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu... 90 4e-16
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 90 4e-16
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group] 90 4e-16
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 89 6e-16
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe... 89 6e-16
gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indi... 89 6e-16
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma... 89 6e-16
gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japo... 89 8e-16
ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japonica Group] g... 89 8e-16
ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group] g... 89 8e-16
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 88 1e-15
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub... 88 1e-15
ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [S... 87 2e-15
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no... 87 3e-15
ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabi... 87 3e-15
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 87 3e-15
>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1438
Score = 101 bits (251), Expect = 1e-19
Identities = 54/119 (45%), Positives = 71/119 (59%)
Frame = -2
Query: 363 GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVE 184
GI+ +K L +LE K V K + +HL LV DCL TG F L + + + V
Sbjct: 1149 GIDVGQKHFLNKLESATKDVGKTILPQHLLLVADCLSATGEFVSLNAKGIGQQLEHASVI 1208
Query: 183 APFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPS 7
APFMQAC + P LV+AAK G+ DNL GSLD+L WGN P LG+ G F+I+ +K + S
Sbjct: 1209 APFMQACFSTPGPCLVKAAKVGVVDNLQGSLDALTWGNTPSLGSGGQFDIIFSKGPVSS 1267
>ref|XP_006857931.1| hypothetical protein AMTR_s00069p00153410 [Amborella trichopoda]
gi|548862033|gb|ERN19398.1| hypothetical protein
AMTR_s00069p00153410 [Amborella trichopoda]
Length = 418
Score = 92.8 bits (229), Expect = 4e-17
Identities = 44/121 (36%), Positives = 70/121 (57%)
Frame = -2
Query: 378 VSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVT 199
+ ++ GI++A K + + + + K VHR HL + +CL +TG F+ L +KK +
Sbjct: 177 ICNAFGIDSAWKYYFENVHSVLSGMGKKVHREHLLIAANCLSVTGEFHGLTLKGIKKHRS 236
Query: 198 KGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKE 19
+ + PFMQAC +P + ++AAK G +D L G LD+L WG +GT G F+IL N
Sbjct: 237 QMSITTPFMQACFASPSESFLQAAKTGAEDRLHGPLDALAWGKKACIGTHGSFDILFNDN 296
Query: 18 E 16
+
Sbjct: 297 D 297
>ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum]
gi|557088296|gb|ESQ29076.1| hypothetical protein
EUTSA_v10023214mg [Eutrema salsugineum]
Length = 1465
Score = 91.3 bits (225), Expect = 1e-16
Identities = 46/113 (40%), Positives = 65/113 (57%)
Frame = -2
Query: 363 GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVE 184
GI+A + + L LE V K + R HL LV DCL +TG F L + K
Sbjct: 1163 GIDAGRSIFLANLESAVSDTGKTILREHLLLVADCLSVTGEFVALNSKGWGKQRQVESTP 1222
Query: 183 APFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLN 25
APF QAC ++P + ++AAK+G++D L GS+D+L WG P GT FEI+++
Sbjct: 1223 APFTQACFSSPSQCFLKAAKEGVRDELQGSIDALAWGKVPCFGTGDQFEIIIS 1275
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 90.9 bits (224), Expect = 2e-16
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Frame = -2
Query: 375 SHSL----GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKK 208
+HSL GI++ K L LE V K + HL LV++ L TG F L L
Sbjct: 1166 THSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTH 1225
Query: 207 TVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
LV+ PFMQAC ++P +++AAK G++DNL GSLD+L WG P LGT G F+IL
Sbjct: 1226 QREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDIL 1284
>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao]
Length = 1484
Score = 89.7 bits (221), Expect = 4e-16
Identities = 44/116 (37%), Positives = 66/116 (56%)
Frame = -2
Query: 363 GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVE 184
GI+A K L L+ + K + HL +V +CL TG F L + L++ V
Sbjct: 1188 GIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVS 1247
Query: 183 APFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEE 16
+PFMQAC +NP V+AAK G D+L G++D+L WG P +GT G F+I+ + ++
Sbjct: 1248 SPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKD 1303
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 89.7 bits (221), Expect = 4e-16
Identities = 49/115 (42%), Positives = 69/115 (60%)
Frame = -2
Query: 375 SHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTK 196
S + GI+A K LQRLE + V K V H+ LV +CL +TG F L K+
Sbjct: 1158 SLAYGIDAGWKFFLQRLESAISDVGKSVLPEHMLLVANCLSVTGEFVGLNAKGWKRQRED 1217
Query: 195 GLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
V +PF+QAC ++P ++AAK G++D+L GSLD+L WG P +GT G F+I+
Sbjct: 1218 ASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGSLDALAWGKVPSVGT-GQFDIV 1271
>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 89.7 bits (221), Expect = 4e-16
Identities = 43/113 (38%), Positives = 68/113 (60%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L + + +HR+HL +V DCL ++G F+ L + LK+ T
Sbjct: 1107 SYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLS 1166
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + AAK+ DNL G+LD++ WG P G+SG F+IL
Sbjct: 1167 ISSPFSEACFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKIL 1219
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 89.0 bits (219), Expect = 6e-16
Identities = 43/119 (36%), Positives = 70/119 (58%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L + + + R+HL +V DCL ++G F+ L + LK T
Sbjct: 1192 SYGIDSAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLS 1251
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEM 13
+ +PF +AC + P + AAK+ DNL G+LD++ WG P +GTSG F+IL + + +
Sbjct: 1252 ISSPFSEACFSRPAHSFINAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSL 1310
>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 89.0 bits (219), Expect = 6e-16
Identities = 47/115 (40%), Positives = 65/115 (56%)
Frame = -2
Query: 363 GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVE 184
GI+A K L LE + K + +HL LV DCL TG F L + + V
Sbjct: 1070 GIDAGWKYFLNNLETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGHTSVS 1129
Query: 183 APFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKE 19
+PF+QAC ++P ++AAK G+ D L GS+++L WGN PP GT F+IL +KE
Sbjct: 1130 SPFVQACFSSPGACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKE 1184
>gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
Length = 1384
Score = 89.0 bits (219), Expect = 6e-16
Identities = 43/113 (38%), Positives = 67/113 (59%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L + + VHR+HL +V DCL ++G F+ L + LK+
Sbjct: 1084 SYGIDSAWKYFVESLRSTTDAIGRNVHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLS 1143
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + AAK+ DNL G+LD++ WG P GTSG F++L
Sbjct: 1144 ISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVL 1196
>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 89.0 bits (219), Expect = 6e-16
Identities = 42/113 (37%), Positives = 61/113 (53%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
+ GI+ A + L + K + HL +CL +TG F L L + +
Sbjct: 840 AFGIDTAWMCFVNSLNSAISETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRKEAT 899
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF+QAC +NP ++AAK G DNL GS+DSL WG PP+GT G F+I+
Sbjct: 900 INSPFVQACFSNPSDCFIKAAKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDII 952
>gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
Length = 1384
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/113 (37%), Positives = 67/113 (59%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L + + +HR+HL +V DCL ++G F+ L + LK+
Sbjct: 1084 SYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLS 1143
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + AAK+ DNL G+LD++ WG P GTSG F++L
Sbjct: 1144 ISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVL 1196
>ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japonica Group]
gi|113632122|dbj|BAF25803.1| Os09g0555200, partial
[Oryza sativa Japonica Group]
Length = 318
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/113 (37%), Positives = 67/113 (59%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L + + +HR+HL +V DCL ++G F+ L + LK+
Sbjct: 18 SYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQRAWLS 77
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + AAK+ DNL G+LD++ WG P GTSG F++L
Sbjct: 78 ISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVL 130
>ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group]
gi|113565180|dbj|BAF15523.1| Os04g0572600 [Oryza sativa
Japonica Group]
Length = 449
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/113 (37%), Positives = 68/113 (60%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ + + + +HR+HL +V DCL ++G F+ L + LK+ T
Sbjct: 149 SYGIDSAWKFFVESVRSTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLS 208
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + AAK+ DNL G+LD++ WG P G+SG F+IL
Sbjct: 209 ISSPFSEACFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKIL 261
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 88.2 bits (217), Expect = 1e-15
Identities = 43/113 (38%), Positives = 66/113 (58%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L + + + R+HL +V DCL ++G F+ L + LK+ T
Sbjct: 1086 SYGIDSAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLS 1145
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + AAKK D L G+LD++ WG P GTSG F+IL
Sbjct: 1146 ISSPFSEACFSRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKIL 1198
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 87.8 bits (216), Expect = 1e-15
Identities = 42/111 (37%), Positives = 67/111 (60%)
Frame = -2
Query: 363 GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVE 184
GI++A K ++ L + + +HR HL +V D L ++G F+ L + LK+ T+
Sbjct: 1175 GIDSAWKYFVESLRSKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTS 1234
Query: 183 APFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+PF +AC + P ++AAK+ DNL G++D+L WG PP GTSG F+I+
Sbjct: 1235 SPFSEACFSRPADTFIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIM 1285
>ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
gi|241938145|gb|EES11290.1| hypothetical protein
SORBIDRAFT_06g025933 [Sorghum bicolor]
Length = 1203
Score = 87.0 bits (214), Expect = 2e-15
Identities = 41/113 (36%), Positives = 69/113 (61%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L+ + + + R HL ++ D + +TG F+ + + LK+ T+
Sbjct: 910 SYGIDSAWKYFVESLKSATTDIGRNIRREHLLVIADSMSVTGQFHAISSHGLKQQRTRLS 969
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + ++AAK+ DNL GSLD++ WG P GTSG FEI+
Sbjct: 970 ISSPFSEACFSRPAQSFIDAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIM 1022
>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
Length = 1410
Score = 86.7 bits (213), Expect = 3e-15
Identities = 47/113 (41%), Positives = 62/113 (54%)
Frame = -2
Query: 363 GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVE 184
GI++ K L LE V V K + HL LV + L +TG F L L + V
Sbjct: 1106 GIDSGWKFFLNNLESAVSDVGKTILPEHLLLVANTLSVTGNFVGLTPKGLARQREHASVA 1165
Query: 183 APFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLN 25
PF QAC +NP ++AAK + D L G+LD+L WGN PPLGT G FE++ +
Sbjct: 1166 TPFSQACFSNPAACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFELVFS 1218
>ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabidopsis thaliana]
gi|334183598|ref|NP_001185298.1| DNA-directed RNA
polymerase IV subunit 1 [Arabidopsis thaliana]
gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName:
Full=DNA-directed RNA polymerase IV subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1;
Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE 4;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
1a gi|8493592|gb|AAF75815.1|AC011000_18 Contains
similarity to DNA-directed RNA Polymerase alpha-subunit
from Methanococcus jannaschii gi|3915860 and contains
Ribosomal protein L36 PF|00444 and RNA-Polymerase
alpha-subunit PF|00623 domains. EST gb|AA597311 comes
from this gene [Arabidopsis thaliana]
gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA
largest subunit, putative; 12353-6556 [Arabidopsis
thaliana] gi|59939208|gb|AAX12372.1| DNA-directed RNA
polymerase beta subunit [Arabidopsis thaliana]
gi|68300852|gb|AAY89363.1| RNA polymerase IV largest
subunit [Arabidopsis thaliana]
gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A
[Arabidopsis thaliana] gi|332195921|gb|AEE34042.1|
nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 86.7 bits (213), Expect = 3e-15
Identities = 44/113 (38%), Positives = 64/113 (56%)
Frame = -2
Query: 363 GIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVE 184
GI+A + + + LE V K + R HL LV D L +TG F L K
Sbjct: 1155 GIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTP 1214
Query: 183 APFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLN 25
APF QAC ++P + ++AAK+G++D+L GS+D+L WG P GT FEI+++
Sbjct: 1215 APFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIIS 1267
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 86.7 bits (213), Expect = 3e-15
Identities = 43/113 (38%), Positives = 67/113 (59%)
Frame = -2
Query: 369 SLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGL 190
S GI++A K ++ L+ + + R HL ++ D L +TG F+ L + LK+ T+
Sbjct: 1150 SYGIDSAWKYFVESLKSATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLS 1209
Query: 189 VEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEIL 31
+ +PF +AC + P + + AAK+ DNL GSLD++ WG P GTSG FEI+
Sbjct: 1210 ISSPFSEACFSRPAQSFINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIM 1262