BLASTX nr result
ID: Ephedra27_contig00029581
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00029581
(786 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002519951.1| RNA polymerase beta subunit-1 (chloroplast) ... 288 2e-75
ref|YP_008082191.1| RNA polymerase beta subunit-1 (chloroplast) ... 227 3e-57
ref|YP_002519786.1| RNA polymerase beta subunit-1 [Gnetum parvif... 226 7e-57
dbj|BAH11232.1| RNA polymerase beta subunit-1 (chloroplast) [Wel... 223 4e-56
ref|YP_001876573.1| RNA polymerase beta [Welwitschia mirabilis] ... 223 4e-56
dbj|BAN16891.1| RNA polymerase beta subunit-1 (chloroplast) [Gne... 223 6e-56
gb|EPS74480.1| hypothetical protein M569_00269, partial [Genlise... 179 3e-46
gb|AHJ61377.1| RNA polymerase beta [Cucumis hystrix] 189 1e-45
ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea ca... 189 1e-45
emb|CCQ71611.1| RNA polymerase beta' subunit (chloroplast) [Salv... 188 2e-45
gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis] 188 2e-45
gb|AFV61805.1| RNA polymerase beta' subunit (chloroplast) [Origa... 187 3e-45
ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [... 187 3e-45
gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus] 187 3e-45
ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifoli... 187 3e-45
gb|ADD31184.1| RNA polymerase beta' subunit protein [Staphylea c... 187 3e-45
emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus] 187 3e-45
ref|YP_004841774.1| RNA polymerase beta [Cucumis melo subsp. mel... 187 4e-45
ref|YP_247590.2| RNA polymerase beta' subunit [Cucumis sativus] 187 4e-45
sp|Q4VZP2.3|RPOC1_CUCSA RecName: Full=DNA-directed RNA polymeras... 187 4e-45
>ref|YP_002519951.1| RNA polymerase beta subunit-1 (chloroplast) [Ephedra equisetina]
gi|220983552|dbj|BAH11319.1| RNA polymerase beta
subunit-1 (chloroplast) [Ephedra equisetina]
Length = 695
Score = 288 bits (736), Expect = 2e-75
Identities = 141/165 (85%), Positives = 143/165 (86%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER
Sbjct: 1 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 60
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGPVKNGVCAC DRKKKKTSICEHCGVEL+DSRVRRYRMGYIQLVC
Sbjct: 61 IFGPVKNGVCACEKKPGEEKKGFPFGDRKKKKTSICEHCGVELIDSRVRRYRMGYIQLVC 120
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV*LDPKFRLYRP 608
PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYC + P L RP
Sbjct: 121 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCKI--YPNIFLARP 163
>ref|YP_008082191.1| RNA polymerase beta subunit-1 (chloroplast) [Gnetum montanum]
gi|490345016|gb|AGL11036.1| RNA polymerase beta
subunit-1 (chloroplast) [Gnetum montanum]
Length = 155
Score = 227 bits (579), Expect = 3e-57
Identities = 107/155 (69%), Positives = 123/155 (79%), Gaps = 1/155 (0%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTS-ICEHCGVELVDSRVRRYRMGYIQLV 470
IFGPVK+ CAC DRKK S +CEHCGVE +DSR+RRYRMGYI+L
Sbjct: 61 IFGPVKSKKCACENKFGEDKKGFAFVDRKKTNDSGLCEHCGVEFMDSRIRRYRMGYIKLA 120
Query: 471 CPVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV 575
PVTHIWY KR+PSYIA LIGK+NSEIKDLVYCNV
Sbjct: 121 SPVTHIWYIKRVPSYIATLIGKQNSEIKDLVYCNV 155
>ref|YP_002519786.1| RNA polymerase beta subunit-1 [Gnetum parvifolium]
gi|212288288|sp|A6BM51.1|RPOC1_GNEPA RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|149941458|dbj|BAF64896.1| RNA polymerase beta'
subunit [Gnetum parvifolium]
gi|220983529|dbj|BAH11297.1| RNA polymerase beta
subunit-1 (chloroplast) [Gnetum parvifolium]
Length = 747
Score = 226 bits (576), Expect = 7e-57
Identities = 106/155 (68%), Positives = 123/155 (79%), Gaps = 1/155 (0%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTS-ICEHCGVELVDSRVRRYRMGYIQLV 470
IFGPVK+ CAC DRKK S +CEHCGVE +DSR+RRYRMGYI+L
Sbjct: 61 IFGPVKSKKCACENKFGEDKKGFAFVDRKKTNDSGLCEHCGVEFMDSRIRRYRMGYIKLA 120
Query: 471 CPVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV 575
PVTHIWY KR+PSYIA LIGK+NSEIKDLVYCN+
Sbjct: 121 SPVTHIWYIKRVPSYIATLIGKQNSEIKDLVYCNL 155
>dbj|BAH11232.1| RNA polymerase beta subunit-1 (chloroplast) [Welwitschia mirabilis]
Length = 698
Score = 223 bits (569), Expect = 4e-56
Identities = 106/155 (68%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MIDSKKKHQKL+ITLVSPEQIRAW E LPNG++VG+V NP T+D T KP+R+GL+CER
Sbjct: 1 MIDSKKKHQKLKITLVSPEQIRAWSETILPNGKRVGEVTNPDTLDPTTKKPQRDGLYCER 60
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTS-ICEHCGVELVDSRVRRYRMGYIQLV 470
IFGPVK+GVCAC DRKKKK S C++C VELVDSR+RRYRMGYI+L
Sbjct: 61 IFGPVKSGVCACEKKPGQKKKGFAFVDRKKKKDSNFCKYCEVELVDSRIRRYRMGYIKLA 120
Query: 471 CPVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV 575
CPV HIWY KR+PSYI LIGKK SE+ DLVYCN+
Sbjct: 121 CPVAHIWYIKRVPSYIPTLIGKKKSEVIDLVYCNL 155
>ref|YP_001876573.1| RNA polymerase beta [Welwitschia mirabilis]
gi|212288311|sp|B2Y1V6.1|RPOC1_WELMI RecName:
Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|169218336|gb|ABY26786.1| RNA polymerase beta
[Welwitschia mirabilis]
Length = 696
Score = 223 bits (569), Expect = 4e-56
Identities = 106/155 (68%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MIDSKKKHQKL+ITLVSPEQIRAW E LPNG++VG+V NP T+D T KP+R+GL+CER
Sbjct: 1 MIDSKKKHQKLKITLVSPEQIRAWSETILPNGKRVGEVTNPDTLDPTTKKPQRDGLYCER 60
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTS-ICEHCGVELVDSRVRRYRMGYIQLV 470
IFGPVK+GVCAC DRKKKK S C++C VELVDSR+RRYRMGYI+L
Sbjct: 61 IFGPVKSGVCACEKKPGQKKKGFAFVDRKKKKDSNFCKYCEVELVDSRIRRYRMGYIKLA 120
Query: 471 CPVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV 575
CPV HIWY KR+PSYI LIGKK SE+ DLVYCN+
Sbjct: 121 CPVAHIWYIKRVPSYIPTLIGKKKSEVIDLVYCNL 155
>dbj|BAN16891.1| RNA polymerase beta subunit-1 (chloroplast) [Gnetum ula]
Length = 692
Score = 223 bits (568), Expect = 6e-56
Identities = 105/155 (67%), Positives = 122/155 (78%), Gaps = 1/155 (0%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MIDS+K+HQKL+ITLVSPEQIR W E LPNG+++G+V NP+TIDL TNKP+RNG FCER
Sbjct: 1 MIDSQKEHQKLKITLVSPEQIRVWSETILPNGKRIGEVTNPKTIDLATNKPERNGSFCER 60
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTS-ICEHCGVELVDSRVRRYRMGYIQLV 470
IFGPVK+ CAC DRKK S +CEHC VE +DSR+RRYRMGYI+L
Sbjct: 61 IFGPVKSKKCACENKFGEDKKGFAFVDRKKTNDSGLCEHCEVEFMDSRIRRYRMGYIKLA 120
Query: 471 CPVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV 575
PVTHIWY KR+PSYIA LIGK+NSEIKDLVYCN+
Sbjct: 121 SPVTHIWYIKRVPSYIATLIGKQNSEIKDLVYCNL 155
>gb|EPS74480.1| hypothetical protein M569_00269, partial [Genlisea aurea]
Length = 1213
Score = 179 bits (454), Expect(2) = 3e-46
Identities = 87/153 (56%), Positives = 107/153 (69%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSPEQIRAW K LPNG+ VG+V P T TNKP+ +GLFCER
Sbjct: 1070 MID-RYKHQQLRIGLVSPEQIRAWATKILPNGKIVGEVTKPYTFHYKTNKPEMDGLFCER 1128
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC +K + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 1129 IFGPIKSGICACGNYRVIRD--------EKDGPNFCEQCGVEFVDSRIRRYQMGYIKLAC 1180
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCN 572
PVTH+WY K +PSYIA L+ K E++ LVYC+
Sbjct: 1181 PVTHVWYLKCLPSYIANLLDKPLKELEGLVYCD 1213
Score = 33.5 bits (75), Expect(2) = 3e-46
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +2
Query: 2 YRVLIRELRSLALELNHTI 58
+R+L+RELRSLALELNH +
Sbjct: 1038 FRLLVRELRSLALELNHCL 1056
>gb|AHJ61377.1| RNA polymerase beta [Cucumis hystrix]
Length = 681
Score = 189 bits (479), Expect = 1e-45
Identities = 90/154 (58%), Positives = 111/154 (72%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW KTLPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC KK+ + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICACGNYRVIGD--------KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV 575
PVTH+WY KR+PSYIA L+ K E++ LVYC+V
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 145
>ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea canadensis]
gi|374094587|gb|AEY84643.1| RNA polymerase beta
(chloroplast) [Elodea canadensis]
Length = 688
Score = 189 bits (479), Expect = 1e-45
Identities = 91/165 (55%), Positives = 113/165 (68%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI VSPEQI +W K LPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGPVSPEQISSWANKILPNGEVVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC +K+ T CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICACGNYRVIGA--------EKEDTKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV*LDPKFRLYRP 608
PVTH+WY KR+PSYIA L+ K E++ LVYC++ P F RP
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDIGTYPDFSFARP 156
>emb|CCQ71611.1| RNA polymerase beta' subunit (chloroplast) [Salvia miltiorrhiza]
Length = 682
Score = 188 bits (478), Expect = 2e-45
Identities = 92/165 (55%), Positives = 114/165 (69%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW K LPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC + +K+ + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICAC--------GNYRVIEDEKENPNFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV*LDPKFRLYRP 608
PVTH+WY KR+PSYIA L+ K E++ LVYC DP F RP
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYC----DPNFSFARP 152
>gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis]
Length = 683
Score = 188 bits (477), Expect = 2e-45
Identities = 92/160 (57%), Positives = 112/160 (70%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QIRAW K LPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPQQIRAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
I GP+K+G+CAC +KK CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 ISGPIKSGICACGNSRVIGA--------EKKDPKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV*LDPKF 593
PVTH+WY KR+PSYIA L+ K E++ LVYC+V LD F
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFSF 151
>gb|AFV61805.1| RNA polymerase beta' subunit (chloroplast) [Origanum vulgare subsp.
vulgare]
Length = 691
Score = 187 bits (476), Expect = 3e-45
Identities = 92/165 (55%), Positives = 115/165 (69%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW K LPNGE VG+V P T TNKP+++GLFCER
Sbjct: 8 MID-RYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 66
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC + +K+ + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 67 IFGPIKSGICAC--------GNYRVIEDEKENLNFCEQCGVEFVDSRIRRYQMGYIKLAC 118
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV*LDPKFRLYRP 608
PVTH+WY KR+PSYIA L+ K E++ LVYC+V P F RP
Sbjct: 119 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV--YPNFSFARP 161
>ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [Salvia miltiorrhiza]
gi|401879733|gb|AFQ30920.1| RNA polymerase beta' subunit
(chloroplast) [Salvia miltiorrhiza]
Length = 691
Score = 187 bits (476), Expect = 3e-45
Identities = 92/165 (55%), Positives = 115/165 (69%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW K LPNGE VG+V P T TNKP+++GLFCER
Sbjct: 8 MID-RYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 66
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC + +K+ + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 67 IFGPIKSGICAC--------GNYRVIEDEKENPNFCEQCGVEFVDSRIRRYQMGYIKLAC 118
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV*LDPKFRLYRP 608
PVTH+WY KR+PSYIA L+ K E++ LVYC+V P F RP
Sbjct: 119 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV--YPNFSFARP 161
>gb|AAZ94642.1| RNA polymerase beta I subunit [Cucumis sativus]
Length = 687
Score = 187 bits (476), Expect = 3e-45
Identities = 87/156 (55%), Positives = 110/156 (70%)
Frame = +3
Query: 105 KLLMIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLF 284
K+ + + KHQ+LRI LVSP+QI AW KTLPNGE VG+V P T TNKP+++GLF
Sbjct: 4 KIFSMIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLF 63
Query: 285 CERIFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQ 464
CERIFGP+K+G+CAC KK+ + CE CGVE VDSR+RRY+MGYI+
Sbjct: 64 CERIFGPIKSGICACGNYRVIGD--------KKEDSKFCEQCGVEFVDSRIRRYQMGYIK 115
Query: 465 LVCPVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCN 572
L CPVTH+WY KR+PSYIA L+ K E++ LVYC+
Sbjct: 116 LACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 151
>ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
gi|345433552|dbj|BAK69374.1| RNA polymerase beta'
subunit [Pyrus pyrifolia]
Length = 681
Score = 187 bits (476), Expect = 3e-45
Identities = 90/154 (58%), Positives = 110/154 (71%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP QI AW +KTLPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPHQISAWAKKTLPNGEVVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC +KK CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICACGNYRVIGD--------EKKDPRFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCNV 575
PVTH+WY KR+PSYIA L+ K E++ LVYC+V
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 145
>gb|ADD31184.1| RNA polymerase beta' subunit protein [Staphylea colchica]
Length = 682
Score = 187 bits (476), Expect = 3e-45
Identities = 89/153 (58%), Positives = 109/153 (71%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW K LPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPQQITAWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC +KK CEHCGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICACGNYRVIG--------NEKKDPKFCEHCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCN 572
PVTH+WY KR+PSYIA L+ K E++ LVYC+
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 144
>emb|CAJ00749.1| RNA polymerase beta chain [Cucumis sativus]
Length = 687
Score = 187 bits (476), Expect = 3e-45
Identities = 87/156 (55%), Positives = 110/156 (70%)
Frame = +3
Query: 105 KLLMIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLF 284
K+ + + KHQ+LRI LVSP+QI AW KTLPNGE VG+V P T TNKP+++GLF
Sbjct: 4 KIFSMIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLF 63
Query: 285 CERIFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQ 464
CERIFGP+K+G+CAC KK+ + CE CGVE VDSR+RRY+MGYI+
Sbjct: 64 CERIFGPIKSGICACGNYRVIGD--------KKEDSKFCEQCGVEFVDSRIRRYQMGYIK 115
Query: 465 LVCPVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCN 572
L CPVTH+WY KR+PSYIA L+ K E++ LVYC+
Sbjct: 116 LACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 151
>ref|YP_004841774.1| RNA polymerase beta [Cucumis melo subsp. melo]
gi|344030482|gb|AEM76883.1| RNA polymerase beta [Cucumis
melo subsp. melo]
Length = 680
Score = 187 bits (475), Expect = 4e-45
Identities = 89/153 (58%), Positives = 110/153 (71%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW KTLPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC KK+ + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICACGNYRVIGD--------KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCN 572
PVTH+WY KR+PSYIA L+ K E++ LVYC+
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 144
>ref|YP_247590.2| RNA polymerase beta' subunit [Cucumis sativus]
Length = 680
Score = 187 bits (475), Expect = 4e-45
Identities = 89/153 (58%), Positives = 110/153 (71%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW KTLPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC KK+ + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICACGNYRVIGD--------KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCN 572
PVTH+WY KR+PSYIA L+ K E++ LVYC+
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 144
>sp|Q4VZP2.3|RPOC1_CUCSA RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta'; Short=RNA polymerase subunit beta'
gi|115432795|gb|ABI97408.1| RNA polymerase beta' subunit
[Cucumis sativus] gi|115498294|gb|ABI98736.1| RNA
polymerase beta [Cucumis sativus]
Length = 680
Score = 187 bits (475), Expect = 4e-45
Identities = 89/153 (58%), Positives = 110/153 (71%)
Frame = +3
Query: 114 MIDSKKKHQKLRITLVSPEQIRAWCEKTLPNGEKVGQVLNPRTIDLVTNKPKRNGLFCER 293
MID + KHQ+LRI LVSP+QI AW KTLPNGE VG+V P T TNKP+++GLFCER
Sbjct: 1 MID-RYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCER 59
Query: 294 IFGPVKNGVCACXXXXXXXXXXXXXXDRKKKKTSICEHCGVELVDSRVRRYRMGYIQLVC 473
IFGP+K+G+CAC KK+ + CE CGVE VDSR+RRY+MGYI+L C
Sbjct: 60 IFGPIKSGICACGNYRVIGD--------KKEDSKFCEQCGVEFVDSRIRRYQMGYIKLAC 111
Query: 474 PVTHIWYFKRIPSYIAMLIGKKNSEIKDLVYCN 572
PVTH+WY KR+PSYIA L+ K E++ LVYC+
Sbjct: 112 PVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 144