BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00029483
         (475 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857560.1| hypothetical protein AMTR_s00061p00061380 [A...    93   3e-17
ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Sela...    92   9e-17
ref|XP_006847845.1| hypothetical protein AMTR_s00029p00062590 [A...    91   1e-16
ref|XP_003525660.2| PREDICTED: pentatricopeptide repeat-containi...    91   2e-16
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...    89   8e-16
emb|CBI36131.3| unnamed protein product [Vitis vinifera]               89   8e-16
ref|XP_006480654.1| PREDICTED: pentatricopeptide repeat-containi...    88   1e-15
ref|XP_004982692.1| PREDICTED: pentatricopeptide repeat-containi...    88   1e-15
gb|EMT28073.1| hypothetical protein F775_18884 [Aegilops tauschii]     87   3e-15
ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containi...    86   4e-15
ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containi...    86   4e-15
gb|AFW79264.1| putative pentatricopeptide repeat family protein ...    86   4e-15
ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago t...    86   4e-15
ref|XP_004516865.1| PREDICTED: pentatricopeptide repeat-containi...    86   5e-15
gb|EMS58485.1| hypothetical protein TRIUR3_26170 [Triticum urartu]     86   5e-15
ref|XP_006655610.1| PREDICTED: pentatricopeptide repeat-containi...    86   7e-15
ref|XP_006644243.1| PREDICTED: putative pentatricopeptide repeat...    86   7e-15
ref|XP_006644241.1| PREDICTED: putative pentatricopeptide repeat...    86   7e-15
ref|XP_004306236.1| PREDICTED: pentatricopeptide repeat-containi...    86   7e-15
ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containi...    86   7e-15

>ref|XP_006857560.1| hypothetical protein AMTR_s00061p00061380 [Amborella trichopoda]
           gi|548861656|gb|ERN19027.1| hypothetical protein
           AMTR_s00061p00061380 [Amborella trichopoda]
          Length = 546

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 47/127 (37%), Positives = 74/127 (58%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           DP  Y   L  C S++++  G+QIHA++ T G S+N  L+T L+TMY  C  L+ A  LF
Sbjct: 50  DPNTYNSLLRSCSSEKSIHQGKQIHARVITSGASTNTQLETTLVTMYTKCGYLEDAYQLF 109

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           D +     V L T L+ ++    +++EAL++    L   + P+EF + + LKA  GL+  
Sbjct: 110 DRVHQPNLVALST-LVGAFAKFGMFEEALNLYCDALEMSLQPDEFVYPSVLKACSGLDEL 168

Query: 21  KLGIQIH 1
           ++G QIH
Sbjct: 169 RIGTQIH 175


>ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
           gi|300147914|gb|EFJ14576.1| hypothetical protein
           SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 48/127 (37%), Positives = 74/127 (58%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D   Y  AL  C S   L+ G+ IH+++F  GF S L++ T L+TMYA C  L  A+ +F
Sbjct: 343 DGVTYVTALGACASLGALKEGKAIHSRVFECGFQS-LVVHTALLTMYAKCGELDAARAVF 401

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           + ++  +NV+  TA++ +Y  +   QEAL +   M++EG  PNE+TFS  L A       
Sbjct: 402 NRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDL 461

Query: 21  KLGIQIH 1
           + G++IH
Sbjct: 462 EAGMKIH 468



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 44/123 (35%), Positives = 71/123 (57%)
 Frame = -2

Query: 369 YAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALK 190
           ++  L+ C S  +LE G +IH  +     +SN+ +Q  L+TMYA C SL+ AK+ F+A  
Sbjct: 448 FSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEA-S 506

Query: 189 DHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGI 10
             K++    A++ +Y    L +EAL +   M S+G+ P+E T ++SL A     S +LG 
Sbjct: 507 GRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGR 566

Query: 9   QIH 1
           +IH
Sbjct: 567 EIH 569



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIF-TRGFSSNLILQTKLITMYANCNSLQTAKNL 205
           D    A +LS C    +L+LGR+IH+++   + F S+L++QT L+ MY  C  L+TA+++
Sbjct: 545 DEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSM 604

Query: 204 FDALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASL 49
           F+ +   ++V   TA+  +Y       + L + L M+  GI PNE TF++ L
Sbjct: 605 FEDM-GQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSIL 655



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRG--FSSNLILQTKLITMYANCNSLQTAKN 208
           D   Y   L  C +  +L   R+IHA I         NL LQ  L+ MY  C S++ A+ 
Sbjct: 143 DKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARK 202

Query: 207 LFDALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLN 28
           +FD +K +++    T+++ SY N+    EAL +   M ++GI P+  TF+++L A   L 
Sbjct: 203 VFDGIK-NRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLV 261

Query: 27  SSK 19
             K
Sbjct: 262 DGK 264



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 40/127 (31%), Positives = 66/127 (51%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D   +  AL  C     L  G+ IHA+I +    S+ +  + LI MYA C  + +A+  F
Sbjct: 246 DSITFTSALLAC---TKLVDGKAIHARIVSSNMESDFV-GSALINMYARCGDVSSARQAF 301

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           + +++ K+V   T+LM +Y+ +  Y+EAL +   M  EG+  +  T+  +L A   L + 
Sbjct: 302 EKIQN-KHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGAL 360

Query: 21  KLGIQIH 1
           K G  IH
Sbjct: 361 KEGKAIH 367



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 34/123 (27%), Positives = 53/123 (43%)
 Frame = -2

Query: 369 YAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALK 190
           Y E L  CG   +L  G+ +H  +   G   N  L   LI MY NC  +  A+  F    
Sbjct: 45  YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104

Query: 189 DHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGI 10
             K V     ++ +Y  + L+  AL +   M  EG  P++ T+   L +   + S +   
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164

Query: 9   QIH 1
           +IH
Sbjct: 165 EIH 167


>ref|XP_006847845.1| hypothetical protein AMTR_s00029p00062590 [Amborella trichopoda]
           gi|548851150|gb|ERN09426.1| hypothetical protein
           AMTR_s00029p00062590 [Amborella trichopoda]
          Length = 625

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 52/126 (41%), Positives = 69/126 (54%)
 Frame = -2

Query: 378 PRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFD 199
           P  YA  L  C   ++L  GR +HA +F  G   N  LQT LI MYA C +L  A+ +FD
Sbjct: 44  PATYASLLQACTKTKSLCTGRVLHALLFFNGHQQNTPLQTNLINMYATCGNLLDAQLVFD 103

Query: 198 ALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSK 19
            L+  KNV    AL++ ++   LY+EAL +   ML  GI P+ FTF   LKA   L   +
Sbjct: 104 RLQS-KNVRSWNALIRGFIKHGLYREALILHSQMLGSGIEPDNFTFPFVLKACADLGDLQ 162

Query: 18  LGIQIH 1
           +G  IH
Sbjct: 163 MGKSIH 168



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 36/119 (30%), Positives = 57/119 (47%)
 Frame = -2

Query: 357 LSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALKDHKN 178
           L  C    +L++G+ IH QI    +  ++ +   L+ M A C  L  A+ +F+ +   KN
Sbjct: 152 LKACADLGDLQMGKSIHHQIERSNYKGDVYVCNALVAMLAKCGDLIEAQRVFNQMTQ-KN 210

Query: 177 VFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGIQIH 1
           V   TA++  Y       EAL +L  M   G+SP   T + +L A   L +   G +IH
Sbjct: 211 VVSWTAMIAGYAQGGRAMEALDLLREMGKAGLSPKPVTLACALPACANLEAIWFGKEIH 269


>ref|XP_003525660.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 737

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 49/119 (41%), Positives = 70/119 (58%)
 Frame = -2

Query: 357 LSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALKDHKN 178
           LS CG  R+LELG+ I + +  RGF  NL L   L+ MY+ C  + TA+ LFD ++D K+
Sbjct: 267 LSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMED-KD 325

Query: 177 VFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGIQIH 1
           V L   ++  Y +  LY+EAL +   ML E ++PN+ TF A L A   L +  LG  +H
Sbjct: 326 VILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVH 384


>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 44/124 (35%), Positives = 74/124 (59%)
 Frame = -2

Query: 372 NYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDAL 193
           NYA  L  C +++ ++ G+Q+HAQ+   GF  + ++ TKL+ +Y  C+SL +A+ LFD +
Sbjct: 77  NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 192 KDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLG 13
             H N+FL   L++ Y  +  Y+ A+ +   M   G+ P+ FTF   LKA   L++ + G
Sbjct: 137 PKH-NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG 195

Query: 12  IQIH 1
            +IH
Sbjct: 196 REIH 199


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 44/124 (35%), Positives = 74/124 (59%)
 Frame = -2

Query: 372 NYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDAL 193
           NYA  L  C +++ ++ G+Q+HAQ+   GF  + ++ TKL+ +Y  C+SL +A+ LFD +
Sbjct: 77  NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 192 KDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLG 13
             H N+FL   L++ Y  +  Y+ A+ +   M   G+ P+ FTF   LKA   L++ + G
Sbjct: 137 PKH-NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHG 195

Query: 12  IQIH 1
            +IH
Sbjct: 196 REIH 199


>ref|XP_006480654.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like isoform X1 [Citrus sinensis]
           gi|568854063|ref|XP_006480655.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like isoform X2 [Citrus sinensis]
           gi|568854065|ref|XP_006480656.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like isoform X3 [Citrus sinensis]
          Length = 779

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 43/126 (34%), Positives = 72/126 (57%)
 Frame = -2

Query: 378 PRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFD 199
           P  YA  +S C S R+L+LGR++H  I +     +++L   ++ MY  C SL+ A+ +FD
Sbjct: 67  PSTYAGLISACSSLRSLQLGRKVHDHILSSNCQPDVVLHNHILNMYGKCGSLEDARMVFD 126

Query: 198 ALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSK 19
            +   +NV   TA++     +    +A+ + + ML  G+ P++FTF + +KA  GL S  
Sbjct: 127 EM-PQRNVVSWTAMIAGCSQNGQENDAIKLYIQMLRSGVMPDQFTFGSIIKACSGLGSVG 185

Query: 18  LGIQIH 1
           LG Q+H
Sbjct: 186 LGRQLH 191



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 32/123 (26%), Positives = 60/123 (48%)
 Frame = -2

Query: 369 YAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALK 190
           + + +  C    +LE+G Q+H  I   G + ++ +   L+ MY  C SL +A  LF+ + 
Sbjct: 476 FNDVMGACAKMASLEMGTQLHCYITKTGLALDVFVTNGLMDMYIKCGSLGSAWELFNFM- 534

Query: 189 DHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGI 10
           ++ ++   + L+  Y      +EAL +   M S G+ PN  T    L A   +   + G+
Sbjct: 535 ENPDIVSWSCLILGYAQFGCGEEALKLFRRMRSLGVRPNHVTLVGVLTACTHVGLVEEGL 594

Query: 9   QIH 1
           Q++
Sbjct: 595 QLY 597



 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D   +   +  C    ++ LGRQ+HA +      S+LI Q  LI MY   + +  A N+F
Sbjct: 167 DQFTFGSIIKACSGLGSVGLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDQILDAWNVF 226

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEG-ISPNEFTFSASLKAVRGLNS 25
             +   K++    A++ ++       EAL     ML  G   PNEF F +   A   L  
Sbjct: 227 SGIA-RKDITSWGAMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSSLLH 285

Query: 24  SKLGIQIH 1
            + G QIH
Sbjct: 286 YECGRQIH 293


>ref|XP_004982692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Setaria italica]
          Length = 682

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 45/123 (36%), Positives = 71/123 (57%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D  +Y   L  C S +++ LG Q+HAQ   R    N+ + + L+ MY  C+    A+  F
Sbjct: 208 DHVSYVAVLGHCASMKDMVLGGQVHAQALKRRLELNVFVGSALVDMYGKCDCAHDAQCAF 267

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           D L + KNV   TA+M +Y  ++LY++AL + L M  EG+ PNEFT++ +L +  GL + 
Sbjct: 268 DVLPE-KNVVSWTAVMTAYTQNELYEDALQLFLDMEVEGVKPNEFTYAVALNSCAGLAAL 326

Query: 21  KLG 13
           + G
Sbjct: 327 RNG 329


>gb|EMT28073.1| hypothetical protein F775_18884 [Aegilops tauschii]
          Length = 646

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 46/123 (37%), Positives = 70/123 (56%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D  +Y   L  C S + L LGRQ+H+Q   R    N+ + + L+ MY  C     A + F
Sbjct: 172 DHVSYVAVLGHCASTKELLLGRQVHSQALKRRLELNVYVGSALVDMYGKCECACDAHSAF 231

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           + L + KNV   TA+M +Y  ++L++EAL + L +  EGI PNEFT++ +L +  GL + 
Sbjct: 232 EVLPE-KNVVSWTAVMTAYTQNELFEEALQLFLDLEMEGIRPNEFTYAVALNSCAGLAAL 290

Query: 21  KLG 13
           K G
Sbjct: 291 KNG 293


>ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 43/123 (34%), Positives = 72/123 (58%)
 Frame = -2

Query: 369 YAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALK 190
           Y   ++ C S R+LE GR+IH  + T  +  ++ILQ  +++MY  C SL+ A+N+FD++ 
Sbjct: 101 YTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSM- 159

Query: 189 DHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGI 10
             KNV   T+++  Y        A+++ + ML  G  P+ FTF + +K+  GL+  KL  
Sbjct: 160 PLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLAR 219

Query: 9   QIH 1
           Q+H
Sbjct: 220 QLH 222



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
 Frame = -2

Query: 462 STLIRSQKQQNNA-DIQDL--LXXXXXXXTDPRNYAEALSLCGSQRNLELGRQIHAQIFT 292
           +TL+ +  QQN A ++  L  L        D       L   G   + E+G QIH  I  
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532

Query: 291 RGFSSNLILQTKLITMYANCNSLQTAKNLFDALKDHKNVFLCTALMQSYLNSKLYQEALS 112
            G + ++ +   LI MY  C SL+ A+ +FD++  + ++   ++L+  Y  +   +EA  
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSI-GNPDIISWSSLIVGYAQAGCGKEAFE 591

Query: 111 VLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGIQIH 1
           +   M   G+ PNE TF   L A   +   + G++++
Sbjct: 592 LFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY 628



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D   +   +  C    + +L RQ+HA +    F ++LI Q  LI+MY   + +  A N+F
Sbjct: 198 DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGI-SPNEFTFSASLKAVRGLNS 25
             +   K++    +++  +       EAL     MLS+ +  PNEF F ++  A   L  
Sbjct: 258 SRI-IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 24  SKLGIQIH 1
              G QIH
Sbjct: 317 PDCGRQIH 324


>ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 43/123 (34%), Positives = 72/123 (58%)
 Frame = -2

Query: 369 YAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALK 190
           Y   ++ C S R+LE GR+IH  + T  +  ++ILQ  +++MY  C SL+ A+N+FD++ 
Sbjct: 101 YTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSM- 159

Query: 189 DHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGI 10
             KNV   T+++  Y        A+++ + ML  G  P+ FTF + +K+  GL+  KL  
Sbjct: 160 PLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLAR 219

Query: 9   QIH 1
           Q+H
Sbjct: 220 QLH 222



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
 Frame = -2

Query: 462 STLIRSQKQQNNA-DIQDL--LXXXXXXXTDPRNYAEALSLCGSQRNLELGRQIHAQIFT 292
           +TL+ +  QQN A ++  L  L        D       L   G   + E+G QIH  I  
Sbjct: 473 NTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK 532

Query: 291 RGFSSNLILQTKLITMYANCNSLQTAKNLFDALKDHKNVFLCTALMQSYLNSKLYQEALS 112
            G + ++ +   LI MY  C SL+ A+ +FD++  + ++   ++L+  Y  +   +EA  
Sbjct: 533 SGLNLDISVSNALINMYTKCGSLECARKMFDSI-GNPDIISWSSLIVGYAQAGCGKEAFE 591

Query: 111 VLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGIQIH 1
           +   M   G+ PNE TF   L A   +   + G++++
Sbjct: 592 LFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY 628



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D   +   +  C    + +L RQ+HA +    F ++LI Q  LI+MY   + +  A N+F
Sbjct: 198 DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGI-SPNEFTFSASLKAVRGLNS 25
             +   K++    +++  +       EAL     MLS+ +  PNEF F ++  A   L  
Sbjct: 258 SRI-IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 24  SKLGIQIH 1
              G QIH
Sbjct: 317 PDCGRQIH 324


>gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 42/120 (35%), Positives = 69/120 (57%)
 Frame = -2

Query: 372 NYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDAL 193
           +Y   L  C S ++  LG Q+HAQ   +    N+ + + L+ MY  C+ +  A   F+ L
Sbjct: 211 SYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVL 270

Query: 192 KDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLG 13
            + KNV   TA+M +Y  ++LY++AL + L M  EG+ PNEFT++ +L +  GL + + G
Sbjct: 271 PE-KNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTG 329


>ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355496269|gb|AES77472.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 700

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 44/127 (34%), Positives = 75/127 (59%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D   Y   + LCG  R+L LG Q+HAQ+   G + ++ + + L+ M+  C  + +A+ +F
Sbjct: 226 DSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVF 285

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           D L+ ++NV + T+LM +YL +  ++E L++L  M  EG   NEFTF+  L A  G+ + 
Sbjct: 286 DGLQ-NRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAAL 344

Query: 21  KLGIQIH 1
           + G  +H
Sbjct: 345 RHGDLLH 351



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
 Frame = -2

Query: 357 LSLCGSQRNLELGRQIHAQIFTRGFSS--------NLILQTKLITMYANCNSLQTAKNLF 202
           L L  + +NL  G+ IH Q+  R  SS        N+I    LI +Y  C+ L+ A+ LF
Sbjct: 19  LKLSANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLF 78

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           D +   ++V     LM  YL+S  + E + +  +M+S    PNE+ F+  L A       
Sbjct: 79  DEMS-LRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRV 137

Query: 21  KLGIQIH 1
             G+Q H
Sbjct: 138 FEGMQCH 144


>ref|XP_004516865.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cicer arietinum]
          Length = 988

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 44/121 (36%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
 Frame = -2

Query: 357 LSLCGSQRNLELGRQIHAQIFTRG-FSSNLILQTKLITMYANCNSLQTAKNLFDALKDHK 181
           L  CG  R++E+GR++H  + T   F +++IL T+++TMY+NC+S   ++ +FD  +  K
Sbjct: 112 LQACGRHRDIEVGRKVHEFVSTSSRFQNDVILITRIVTMYSNCSSPNDSRFVFDVSR-KK 170

Query: 180 NVFLCTALMQSYLNSKLYQEALSVLLHMLS-EGISPNEFTFSASLKAVRGLNSSKLGIQI 4
           N+FL  AL+ SY  + L+ EA+ + + ++S    +P+ FT    +KA  GL+ ++LG  I
Sbjct: 171 NLFLWNALLSSYSRNALFHEAVCLFVELISATEFAPDNFTLPCVIKACAGLSDARLGETI 230

Query: 3   H 1
           H
Sbjct: 231 H 231



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 30/119 (25%), Positives = 61/119 (51%)
 Frame = -2

Query: 357 LSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALKDHKN 178
           LS C   ++L  G++IH  +   G   +  +   L+++Y  C  +  AK  FD +++ K+
Sbjct: 522 LSACARLKSLSCGKEIHGFMLRNGLQLDEFIGISLVSLYVQCGKMLPAKLFFDNMEE-KS 580

Query: 177 VFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGIQIH 1
           +     ++  +  ++L  +AL +   MLS  I P+E     +L A   +++ +LG ++H
Sbjct: 581 LVCWNTMINGFSQNELPCDALDMFRQMLSSKIWPDEIAIMGALGACSQVSALRLGKELH 639


>gb|EMS58485.1| hypothetical protein TRIUR3_26170 [Triticum urartu]
          Length = 564

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 44/117 (37%), Positives = 68/117 (58%)
 Frame = -2

Query: 363 EALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALKDH 184
           E L  C S + L LGRQ+HAQ   R    ++ + + L+ MY  C     A + F+ L + 
Sbjct: 97  EILGHCASTKELLLGRQVHAQALKRRLELSVYVGSALVDMYGKCECAYDASSAFEVLPE- 155

Query: 183 KNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLG 13
           KNV   TA+M +Y  ++L++EAL + L +  EG+ PNEFT++ +L +  GL + K G
Sbjct: 156 KNVVSWTAVMTAYTQNELFEEALQLFLDLKMEGVQPNEFTYAVALNSCAGLAALKNG 212


>ref|XP_006655610.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Oryza brachyantha]
          Length = 687

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 45/123 (36%), Positives = 69/123 (56%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D  +Y   L  C S + L LG Q+H Q   R    NL + + L+ MY  C+    A  +F
Sbjct: 213 DHVSYVTVLGHCASTKELVLGSQLHTQALKRRLELNLYVGSALVDMYGKCDCPHDANCVF 272

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           + L + KN+   TA+M +Y  ++L+++AL + L M  EG+ PNEFT++ +L +  GL S 
Sbjct: 273 EVLPE-KNIVSWTAVMTAYTQNELFEDALHLFLDMEMEGVRPNEFTYAVALNSCAGLASL 331

Query: 21  KLG 13
           K G
Sbjct: 332 KNG 334


>ref|XP_006644243.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like isoform X3 [Oryza brachyantha]
          Length = 514

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 47/123 (38%), Positives = 71/123 (57%)
 Frame = -2

Query: 369 YAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALK 190
           YA  LSL GS  ++++G+QIHAQ+   G +S  IL   LI MY+ C  +  AK+ F + K
Sbjct: 44  YATMLSLAGSLPHVQIGKQIHAQLLLLGLASQDILGNALIDMYSKCGMIDAAKSNF-SKK 102

Query: 189 DHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGI 10
             K+    TA++  Y+ + L++EAL +   M   G+ P+  TFS+ +KA   L    LG 
Sbjct: 103 SEKSAISWTAMITGYVQNGLHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLTMMGLGR 162

Query: 9   QIH 1
           Q+H
Sbjct: 163 QLH 165


>ref|XP_006644241.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like isoform X1 [Oryza brachyantha]
           gi|573913107|ref|XP_006644242.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At2g01510-like isoform X2 [Oryza brachyantha]
          Length = 543

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 47/123 (38%), Positives = 71/123 (57%)
 Frame = -2

Query: 369 YAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALK 190
           YA  LSL GS  ++++G+QIHAQ+   G +S  IL   LI MY+ C  +  AK+ F + K
Sbjct: 73  YATMLSLAGSLPHVQIGKQIHAQLLLLGLASQDILGNALIDMYSKCGMIDAAKSNF-SKK 131

Query: 189 DHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGI 10
             K+    TA++  Y+ + L++EAL +   M   G+ P+  TFS+ +KA   L    LG 
Sbjct: 132 SEKSAISWTAMITGYVQNGLHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLTMMGLGR 191

Query: 9   QIH 1
           Q+H
Sbjct: 192 QLH 194


>ref|XP_004306236.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 757

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 46/154 (29%), Positives = 77/154 (50%)
 Frame = -2

Query: 462 STLIRSQKQQNNADIQDLLXXXXXXXTDPRNYAEALSLCGSQRNLELGRQIHAQIFTRGF 283
           ++L R +  +      D L         P  YA  +S C   R++E GR+IH  I     
Sbjct: 37  TSLCRQKHYREALQAFDFLDKNTSFKVFPSTYANLVSACSFLRSIEHGRKIHDHILGSNC 96

Query: 282 SSNLILQTKLITMYANCNSLQTAKNLFDALKDHKNVFLCTALMQSYLNSKLYQEALSVLL 103
             +++LQ  ++ MY  C S   A+ +FD + + +NV   T+L+  Y  ++   +A+ +  
Sbjct: 97  EQDIVLQNHILNMYGKCGSFWDARKVFDEMPE-RNVVSWTSLIAGYSQNRQEDKAVELYF 155

Query: 102 HMLSEGISPNEFTFSASLKAVRGLNSSKLGIQIH 1
            ML  G  P++FTF + +KA  GL +  LG Q+H
Sbjct: 156 QMLRSGCKPDQFTFGSVVKACSGLGNVWLGRQVH 189



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 37/122 (30%), Positives = 60/122 (49%)
 Frame = -2

Query: 366 AEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLFDALKD 187
           +  +  C    +LE+G QIH      G    + +   LI MY  C SL++A+ LF +L D
Sbjct: 475 SNVIGACADIASLEVGNQIHCFTVKSGLVFGVTVSNGLIDMYTKCGSLESAQKLF-SLMD 533

Query: 186 HKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSSKLGIQ 7
           + +V   ++L+  Y  S   +EAL +   M + G+ PNE T    L A   +   + G Q
Sbjct: 534 NPDVVSWSSLIMGYAQSGCGEEALELFKTMKALGVKPNEVTLVGVLTACSHIGLVEKGRQ 593

Query: 6   IH 1
           ++
Sbjct: 594 VY 595


>ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like isoform X1 [Glycine max]
           gi|571479063|ref|XP_006587752.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g39680-like isoform X2 [Glycine max]
          Length = 694

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 44/127 (34%), Positives = 74/127 (58%)
 Frame = -2

Query: 381 DPRNYAEALSLCGSQRNLELGRQIHAQIFTRGFSSNLILQTKLITMYANCNSLQTAKNLF 202
           D   Y   + LC   R+L+LG ++HA++   G   +  + + LI MY  C  +  A+N+F
Sbjct: 220 DHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVF 279

Query: 201 DALKDHKNVFLCTALMQSYLNSKLYQEALSVLLHMLSEGISPNEFTFSASLKAVRGLNSS 22
           D L+ ++NV + TALM +YL +  ++E+L++   M  EG  PNE+TF+  L A  G+ + 
Sbjct: 280 DGLQ-NRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAAL 338

Query: 21  KLGIQIH 1
           + G  +H
Sbjct: 339 RHGDLLH 345



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
 Frame = -2

Query: 357 LSLCGSQRNLELGRQIHAQIFTRGFSSN---LILQTKLITMYANCNSLQTAKNLFDALKD 187
           L LC   + L  G+ +HAQ   R  +SN   +     L+ +Y  C  L  A+NLFDA+  
Sbjct: 19  LKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAM-P 77

Query: 186 HKNVFLCTALMQSYLNSKLYQEALSVLLHMLS-EGISPNEFTFSASLKAVRGLNSSKLGI 10
            +NV     LM  YL+   + E L +  +M+S +   PNE+ F+ +L A       K G+
Sbjct: 78  LRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGM 137

Query: 9   QIH 1
           Q H
Sbjct: 138 QCH 140