BLASTX nr result
ID: Ephedra27_contig00029213
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00029213
(394 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 89 6e-16
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 81 1e-13
gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe... 74 2e-11
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 71 1e-10
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 69 6e-10
emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera] 67 2e-09
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 67 2e-09
ref|XP_004516517.1| PREDICTED: uncharacterized mitochondrial pro... 66 5e-09
emb|CAN75282.1| hypothetical protein VITISV_007973 [Vitis vinifera] 66 5e-09
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 65 7e-09
gb|EOY30029.1| Uncharacterized protein TCM_037378 [Theobroma cacao] 64 2e-08
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 64 2e-08
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 63 5e-08
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 63 5e-08
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 63 5e-08
emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera] 63 5e-08
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 62 6e-08
emb|CAN73519.1| hypothetical protein VITISV_010313 [Vitis vinifera] 61 1e-07
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 61 2e-07
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 61 2e-07
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 89.0 bits (219), Expect = 6e-16
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VR+VP L KNLISL LE G + + G + +GALV++KG+ +N LYY GSTV G
Sbjct: 284 VRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGT 343
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQT-----LAKVVNGIKSQYCKDLI 66
+ + + K+ + TK WH+RL AG K+LQ L K K ++C+ +
Sbjct: 344 VAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKACKLEFCEHCV 397
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/95 (44%), Positives = 61/95 (64%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VRHVP +TKNLISLS+L+ G+ + G + V G+ +++KG+ LY+L GSTVTG+
Sbjct: 338 VRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGS 397
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
+ +E + MTK WHIRL G + +Q L+K
Sbjct: 398 AHVA-SSEFHQKDMTKLWHIRLGHMGERGMQILSK 431
>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
erythrorhizon]
Length = 244
Score = 73.9 bits (180), Expect = 2e-11
Identities = 40/94 (42%), Positives = 56/94 (59%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VRH+ L KNLISL +LE +G KIVLE G + V+ +LV++KG+ LY LVG+ VTG+
Sbjct: 34 VRHIQDLHKNLISLRLLEKNGCKIVLEDGVLKVVRRSLVVMKGVSHGNLYPLVGTMVTGD 93
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLA 111
+ + + T WH+RL K L L+
Sbjct: 94 LAVGVVGHKDQTECTMIWHMRLGHMSEKGLSLLS 127
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 71.2 bits (173), Expect = 1e-10
Identities = 41/104 (39%), Positives = 57/104 (54%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VR++P L +NLISL +L+ GY E + V G+L ++KG +N LY L+G TVTG
Sbjct: 320 VRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGK 379
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLAKVVNGIKSQY 81
ST +++ TK WH RL + LQ L K G+ Y
Sbjct: 380 VST---VLKEDVGTTKLWHQRLGHISHRGLQELEK--QGVLGNY 418
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 68.9 bits (167), Expect = 6e-10
Identities = 42/98 (42%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTV--- 222
VRH P L +NLISL +L+ GY GG+ V G +++KG+ EN LY L GS+V
Sbjct: 352 VRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQ 411
Query: 221 TGNCSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
G + SEE TK WH+RL K LQ L+K
Sbjct: 412 EGVSAVSEEDR------TKLWHLRLGHMSIKGLQELSK 443
>emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera]
Length = 220
Score = 67.4 bits (163), Expect = 2e-09
Identities = 42/95 (44%), Positives = 54/95 (56%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VRHVP L KNLISL L+ +G E G + + GALV++KG + N LY L GSTV G
Sbjct: 128 VRHVPKLKKNLISLGTLDSNGCTYKAEGGVLRISKGALVVMKGKKINGLYTLKGSTVIGV 187
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
S T ++ T+ +HIRL K L L+K
Sbjct: 188 VVVS--TSKSIIETTRLFHIRLGHMSEKGLTILSK 220
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 67.4 bits (163), Expect = 2e-09
Identities = 40/104 (38%), Positives = 57/104 (54%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VR++P L KNLISL +L+ Y LE + V G+L+++KG + LY L+G TVT
Sbjct: 50 VRYIPELKKNLISLGMLDESRYTFKLEPNSLRVARGSLIVMKGTIKIGLYTLIGQTVTSK 109
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLAKVVNGIKSQY 81
ST + +++ TK WH RL + LQ L K G+ Y
Sbjct: 110 VSTMLK---EDMGTTKLWHQRLGHISHRGLQELEK--QGVLGNY 148
>ref|XP_004516517.1| PREDICTED: uncharacterized mitochondrial protein AtMg00300-like
[Cicer arietinum]
Length = 152
Score = 65.9 bits (159), Expect = 5e-09
Identities = 35/93 (37%), Positives = 53/93 (56%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VRHVP L +NLISL +LE G EKG + ++ G+LV++ G R++ +Y L G VTG
Sbjct: 7 VRHVPELERNLISLGMLEEAGCSYKAEKGTLKIIKGSLVIMNGTRDHDIYLLNGPIVTGM 66
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTL 114
+ + + ++ WH RL + K +Q L
Sbjct: 67 TAMTIQASSQ----ANMWHQRLGNVSLKGMQVL 95
>emb|CAN75282.1| hypothetical protein VITISV_007973 [Vitis vinifera]
Length = 226
Score = 65.9 bits (159), Expect = 5e-09
Identities = 37/93 (39%), Positives = 53/93 (56%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VR++P L +NLISL +L+ GY E + V G+L+++KG +N LY L+G TVT
Sbjct: 137 VRYIPKLKRNLISLGMLDKPGYTFKSEPNSLRVDRGSLIVMKGTVKNGLYTLIGQTVTSK 196
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTL 114
ST + +++ TK WH RL LQ L
Sbjct: 197 VSTMLK---EDVGTTKLWHQRLGHISHMGLQQL 226
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 65.5 bits (158), Expect = 7e-09
Identities = 36/93 (38%), Positives = 52/93 (55%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VR++P ++KNLISL LE G +KG + + L ++ G +E+ LY+L G+T+ G
Sbjct: 371 VRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFLQGTTLAGE 430
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTL 114
+ + KE T WH RL GAK LQ L
Sbjct: 431 ANVID----KEKDETSLWHSRLGHIGAKGLQVL 459
>gb|EOY30029.1| Uncharacterized protein TCM_037378 [Theobroma cacao]
Length = 346
Score = 64.3 bits (155), Expect = 2e-08
Identities = 36/95 (37%), Positives = 54/95 (56%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
V+HVP + NLISLS+L+ GYK + G + + GAL +IKG + LY LVG+TV
Sbjct: 34 VKHVPDMKNNLISLSLLDKKGYKYSGQDGVLNISKGALTIIKGKLSDDLYCLVGNTVIET 93
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
S ++ +T WH+RL + ++ L+K
Sbjct: 94 VSVVSSNHPED-DVTHLWHMRLGHMSERWIRKLSK 127
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 63.9 bits (154), Expect = 2e-08
Identities = 38/104 (36%), Positives = 56/104 (53%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VR++P L +NLISL +L+ GY + + V G+L ++KG +N LY L+G T+TG
Sbjct: 384 VRYIPELKRNLISLGMLDKLGYTFKSKPNSLRVARGSLTVMKGTIKNGLYTLIGQTMTGK 443
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLAKVVNGIKSQY 81
S +++ +TK WH RL K LQ K G+ Y
Sbjct: 444 VSI---VLKEDMGITKLWHQRLGHINHKRLQEPQK--QGVLGNY 482
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKG-IRENMLYYLVGSTVTG 216
VR++P +++NLISLS L+ +GYK G + V G+LV +KG + LY L G T+TG
Sbjct: 350 VRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTG 409
Query: 215 NCSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
+ S + E T WH+RL + L K
Sbjct: 410 SDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMK 445
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKG-IRENMLYYLVGSTVTG 216
VR++P +++NLISLS L+ +GYK G + V G+LV +KG + LY L G T+TG
Sbjct: 350 VRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTG 409
Query: 215 NCSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
+ S + E T WH+RL + L K
Sbjct: 410 SDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMK 445
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKG-IRENMLYYLVGSTVTG 216
VR++P +++NLISLS L+ +GYK G + V G+LV +KG + LY L G T+TG
Sbjct: 350 VRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTG 409
Query: 215 NCSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
+ S + E T WH+RL + L K
Sbjct: 410 SDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMK 445
>emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera]
Length = 318
Score = 62.8 bits (151), Expect = 5e-08
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
+RHVP L K LISL L+ +G G + +L GALV++KG + N LY L G T+ G
Sbjct: 86 LRHVPKLKKKLISLGTLDSNGCTYKAGGGVLRILKGALVVMKGNKINGLYTLQGGTIIGA 145
Query: 212 CSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK--VVNGIKS---QYCKDLIRVSSC 51
S ++ T+ WH+RL K L L+K +++G K+ +C+ + C
Sbjct: 146 VVVS--ISESIIETTRLWHMRLGHMSDKGLTILSKRGLLDGQKTGELDFCEHCVFGKQC 202
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 62.4 bits (150), Expect = 6e-08
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
VR+VP+++KNLIS+ LE G + G + V+ G + L+KG + LY L G VTGN
Sbjct: 364 VRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQGVVVTGN 423
Query: 212 CS--TSEETEAKELKMTKWWHIRLADAGAKALQTL-------AKVVNGIKSQYCKDLI 66
+ TS + E +K WH RL + + L A+ +NG+ ++C+D +
Sbjct: 424 ANAVTSSKDE------SKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGL--EFCEDCV 473
>emb|CAN73519.1| hypothetical protein VITISV_010313 [Vitis vinifera]
Length = 322
Score = 61.2 bits (147), Expect = 1e-07
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKGIRENMLYYLVGSTVTGN 213
V +V NLISL VL+ G I +E G + +L GA++++KG+R+N LY L G TV G
Sbjct: 97 VMYVLDFKGNLISLGVLDSMGCTIKIENGTLKILKGAMIVMKGLRKNGLYTLQGETVDG- 155
Query: 212 CSTSEETEAKELKMTKWWHIRLAD-AGAKALQTLAK 108
TS ++ K W +RL+D K LQ L+K
Sbjct: 156 --TSIVAAKDRNEIAKLWCMRLSDHVSEKGLQILSK 189
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 60.8 bits (146), Expect = 2e-07
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIKG-IRENMLYYLVGSTVTG 216
VRH+P+L +NLISLS L+ GY+ G + V G+LV++K I+ LY+L G+T+ G
Sbjct: 301 VRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVG 360
Query: 215 NCSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
N + ++ L + WH+RL L L+K
Sbjct: 361 NVAAVTDS----LSNSDLWHMRLGHMSEIGLAELSK 392
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 60.8 bits (146), Expect = 2e-07
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = -3
Query: 392 VRHVPTLTKNLISLSVLEMDGYKIVLEKGGVMVLNGALVLIK-GIRENMLYYLVGSTVTG 216
VRH+P L ++LISL L+ GYK G + V G+LV++K I+ LY+L G+T+ G
Sbjct: 359 VRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILG 418
Query: 215 NCSTSEETEAKELKMTKWWHIRLADAGAKALQTLAK 108
N +T ++ + T WH+RL L L+K
Sbjct: 419 NVATVSDSLSNS-DATNLWHMRLGHMSEIGLAELSK 453